Cow genome map
| Conread name: | rtra01_i24r1.y1 |
| Conread position: | 1-136 |
| Cow position: | chr9:22320058-22319917 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-139 |
| Cow position: | chr9:3311266-3311411 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-155 |
| Cow position: | chr9:26569914-26570069 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-204 |
| Cow position: | chr9:5534285-5534089 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 147 |
| Conread position: | 1-218 |
| Cow position: | chr9:28680847-28681057 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-219 |
| Cow position: | chr9:34240452-34240241 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 1-219 |
| Cow position: | chr9:50840080-50840291 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-219 |
| Cow position: | chr9:56301793-56301582 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr9:202643-202419 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr9:1099241-1099459 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr9:3998114-3997893 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 28, 152 |
| Conread position: | 1-226 |
| Cow position: | chr9:4940852-4940633 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 56, 148 |
| Conread position: | 1-226 |
| Cow position: | chr9:10643991-10643773 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 145 |
| Conread position: | 1-226 |
| Cow position: | chr9:10856667-10856885 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr9:15053235-15053015 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 56, 149 |
| Conread position: | 1-226 |
| Cow position: | chr9:20941104-20941339 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 1-226 |
| Cow position: | chr9:48795645-48795427 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 65, 147 |
| Conread position: | 1-226 |
| Cow position: | chr9:50003106-50003313 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-287 |
| Cow position: | chr9:1000112-1000414 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-301 |
| Cow position: | chr9:35543881-35543565 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-341 |
| Cow position: | chr9:1850968-1850612 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 1-345 |
| Cow position: | chr9:3061238-3061598 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-361 |
| Cow position: | chr9:3806244-3806619 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 1-361 |
| Cow position: | chr9:6708272-6707895 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 158 |
| Conread position: | 1-361 |
| Cow position: | chr9:22655460-22655834 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 210 |
| Conread position: | 1-361 |
| Cow position: | chr9:59196502-59196880 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 188 |
| Conread position: | 1-362 |
| Cow position: | chr9:1063052-1062671 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 160 |
| Conread position: | 1-362 |
| Cow position: | chr9:52408674-52408301 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 49, 232 |
| Conread position: | 1-363 |
| Cow position: | chr9:1998648-1998270 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 188 |
| Conread position: | 1-363 |
| Cow position: | chr9:2681222-2681578 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 1-363 |
| Cow position: | chr9:2873121-2873499 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-363 |
| Cow position: | chr9:5430114-5430492 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr9:5452993-5452615 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr9:6549824-6550202 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr9:7104584-7104206 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-363 |
| Cow position: | chr9:13312212-13312588 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr9:17017396-17017779 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 161 |
| Conread position: | 1-363 |
| Cow position: | chr9:17303325-17302948 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr9:26277301-26277667 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 149 |
| Conread position: | 1-363 |
| Cow position: | chr9:27782243-27781887 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-363 |
| Cow position: | chr9:27897660-27898031 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 1-363 |
| Cow position: | chr9:31113801-31114172 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 154 |
| Conread position: | 1-363 |
| Cow position: | chr9:31417857-31417491 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr9:41507199-41506821 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr9:43493591-43493969 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr9:43495781-43496159 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr9:45876167-45876543 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 207 |
| Conread position: | 1-363 |
| Cow position: | chr9:46626960-46627336 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr9:54459854-54459477 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 147 |
| Conread position: | 1-363 |
| Cow position: | chr9:56176417-56176795 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 156 |
| Conread position: | 3-226 |
| Cow position: | chr9:14002689-14002905 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 3-337 |
| Cow position: | chr9:14766712-14767044 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 54, 131 |
| Conread position: | 3-360 |
| Cow position: | chr9:1991886-1991530 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 147 |
| Conread position: | 5-363 |
| Cow position: | chr9:44203418-44203055 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 152 |
| Conread position: | 8-226 |
| Cow position: | chr9:8283554-8283343 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 48, 138 |
| Conread position: | 20-226 |
| Cow position: | chr9:1741200-1741001 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 37, 128 |
| Conread position: | 22-363 |
| Cow position: | chr9:39812983-39813340 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 135 |
| Conread position: | 51-363 |
| Cow position: | chr9:52401662-52401984 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 124, 91 |
Show alignments to all cow chromosomes.