Cow genome map

Conread name: rtra03_h21r1.y1

Conread position: 1-499
Cow position: chr15:1328154-1328651 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 15

Conread position: 6-493
Cow position: chr15:18660632-18661122 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 6-596
Cow position: chr15:9522888-9522287 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 207

Conread position: 6-604
Cow position: chr15:5243714-5243127 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 9-596
Cow position: chr15:59954-60538 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 58

Conread position: 9-596
Cow position: chr15:12418392-12417800 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 204

Conread position: 9-604
Cow position: chr15:28487809-28487209 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 138

Conread position: 11-321
Cow position: chr15:3542772-3543069 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 8

Conread position: 11-407
Cow position: chr15:52208861-52209252 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 157

Conread position: 11-527
Cow position: chr15:334747-335252 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 65

Conread position: 11-586
Cow position: chr15:9736397-9735824 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 8

Conread position: 11-596
Cow position: chr15:17035307-17034715 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 6

Conread position: 11-603
Cow position: chr15:31270551-31269954 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 201

Conread position: 12-612
Cow position: chr15:24287181-24286594 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 52

Conread position: 13-312
Cow position: chr15:27748332-27748622 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-328
Cow position: chr15:4727529-4727841 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 206

Conread position: 13-329
Cow position: chr15:7577462-7577772 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 202

Conread position: 13-331
Cow position: chr15:25331749-25332058 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-331
Cow position: chr15:32065931-32065626 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 56

Conread position: 13-343
Cow position: chr15:2590076-2589757 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-343
Cow position: chr15:2592437-2592118 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-375
Cow position: chr15:3891889-3892243 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 258
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 28, 120

Conread position: 13-378
Cow position: chr15:25204683-25204327 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-378
Cow position: chr15:31363786-31364148 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 158

Conread position: 13-402
Cow position: chr15:6153608-6153224 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 154

Conread position: 13-410
Cow position: chr15:3792573-3792179 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-410
Cow position: chr15:10825795-10826191 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-435
Cow position: chr15:6487781-6488203 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-450
Cow position: chr15:6381732-6381286 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 151

Conread position: 13-451
Cow position: chr15:23709190-23708749 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-457
Cow position: chr15:14579823-14579383 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-478
Cow position: chr15:1775474-1775932 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 144

Conread position: 13-499
Cow position: chr15:7236631-7237110 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 15

Conread position: 13-525
Cow position: chr15:7840658-7841174 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 104

Conread position: 13-540
Cow position: chr15:21452265-21452779 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 43

Conread position: 13-572
Cow position: chr15:5019714-5020258 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-573
Cow position: chr15:6164768-6164206 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 17

Conread position: 13-575
Cow position: chr15:15344781-15344214 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 13-585
Cow position: chr15:6551294-6550715 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-585
Cow position: chr15:8753199-8753761 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 110

Conread position: 13-586
Cow position: chr15:35750973-35750396 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-587
Cow position: chr15:480906-481485 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-587
Cow position: chr15:2633379-2632807 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 20

Conread position: 13-587
Cow position: chr15:4081328-4081902 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 72

Conread position: 13-587
Cow position: chr15:25070172-25069593 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-595
Cow position: chr15:19735477-19734888 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr15:313478-312889 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 19

Conread position: 13-596
Cow position: chr15:2899932-2899346 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 154

Conread position: 13-596
Cow position: chr15:4924487-4925069 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 43

Conread position: 13-596
Cow position: chr15:7270663-7271250 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr15:7318890-7319478 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-596
Cow position: chr15:21663420-21662829 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr15:21825187-21825777 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 199

Conread position: 13-596
Cow position: chr15:22540495-22539927 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr15:36330136-36329548 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 62

Conread position: 13-596
Cow position: chr15:38982983-38983573 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 43

Conread position: 13-596
Cow position: chr15:42939233-42939823 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 161

Conread position: 13-601
Cow position: chr15:29985-29391 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 154

Conread position: 13-601
Cow position: chr15:2663710-2664305 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr15:2795517-2796110 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr15:6463413-6463984 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 18

Conread position: 13-601
Cow position: chr15:13430146-13430738 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-601
Cow position: chr15:16800596-16801191 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr15:18265439-18264845 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr15:21636596-21637189 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 144

Conread position: 13-601
Cow position: chr15:24090150-24090745 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr15:31586076-31585481 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 107

Conread position: 13-601
Cow position: chr15:32702415-32701816 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr15:42944285-42943689 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 13-603
Cow position: chr15:2645028-2644427 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-603
Cow position: chr15:4814884-4815474 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 40

Conread position: 13-604
Cow position: chr15:3153241-3152650 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 72

Conread position: 13-604
Cow position: chr15:4653793-4654388 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chr15:5641263-5640671 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 70

Conread position: 13-604
Cow position: chr15:8101780-8102369 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chr15:36941064-36940462 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 186

Conread position: 13-604
Cow position: chr15:44072770-44073367 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chr15:51220063-51220662 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-605
Cow position: chr15:4629922-4629325 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 25

Conread position: 13-605
Cow position: chr15:37394033-37394648 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 89

Conread position: 13-612
Cow position: chr15:5982967-5983557 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 78

Conread position: 13-613
Cow position: chr15:43776-44400 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 253

Conread position: 13-613
Cow position: chr15:17287326-17287922 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 111

Conread position: 13-613
Cow position: chr15:32718280-32717683 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 21

Conread position: 13-613
Cow position: chr15:44298534-44297936 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 55

Conread position: 13-625
Cow position: chr15:4917513-4918125 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 139

Conread position: 14-323
Cow position: chr15:40820061-40819760 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 32, 204

Conread position: 14-331
Cow position: chr15:20457375-20457680 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 236
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 27, 54

Conread position: 14-364
Cow position: chr15:8060280-8060633 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 237
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 126

Conread position: 14-415
Cow position: chr15:1849866-1849473 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 270
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 77, 101

Conread position: 14-489
Cow position: chr15:13389046-13388565 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 52

Conread position: 14-590
Cow position: chr15:7552944-7553513 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 53

Conread position: 14-596
Cow position: chr15:13682661-13683253 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 72

Conread position: 14-607
Cow position: chr15:8029693-8029091 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 207

Conread position: 14-612
Cow position: chr15:11291427-11290846 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 82

Conread position: 14-612
Cow position: chr15:36670492-36671103 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 197

Conread position: 14-613
Cow position: chr15:12365729-12366324 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 168

Conread position: 14-613
Cow position: chr15:14573978-14573382 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 114

Conread position: 14-613
Cow position: chr15:23773640-23774232 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 71

Conread position: 14-613
Cow position: chr15:25553473-25554071 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 30

Conread position: 14-625
Cow position: chr15:21830260-21830878 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 15-575
Cow position: chr15:49448818-49448268 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 373
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 54, 23

Conread position: 15-612
Cow position: chr15:34517462-34518060 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 198

Conread position: 16-570
Cow position: chr15:17215926-17215379 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 123

Conread position: 16-581
Cow position: chr15:21966362-21966929 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 92

Conread position: 17-587
Cow position: chr15:21806178-21806750 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 28

Conread position: 17-613
Cow position: chr15:7940757-7941347 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 152

Conread position: 19-400
Cow position: chr15:39418685-39419054 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 262
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 78, 192

Conread position: 19-493
Cow position: chr15:4768509-4768986 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 150

Conread position: 19-596
Cow position: chr15:3721802-3721222 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 5

Conread position: 22-410
Cow position: chr15:6493266-6493639 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 268
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 28, 16

Conread position: 22-517
Cow position: chr15:17398048-17398525 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 97

Conread position: 22-613
Cow position: chr15:23275242-23274659 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 23

Conread position: 24-587
Cow position: chr15:3008500-3007937 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 145

Conread position: 24-596
Cow position: chr15:3258174-3257595 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 143

Conread position: 24-611
Cow position: chr15:18020035-18019458 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 143

Conread position: 24-613
Cow position: chr15:7058060-7058651 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 161

Conread position: 26-574
Cow position: chr15:17295343-17295887 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 23

Conread position: 30-624
Cow position: chr15:13679721-13680316 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 15

Conread position: 33-376
Cow position: chr15:21840470-21840801 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 179

Conread position: 33-573
Cow position: chr15:50955987-50956515 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 354
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 111

Conread position: 33-596
Cow position: chr15:7587437-7586869 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 8

Conread position: 38-410
Cow position: chr15:10735906-10736273 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 255
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 59, 10

Conread position: 40-613
Cow position: chr15:6649051-6648481 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 89

Conread position: 42-575
Cow position: chr15:18579082-18579615 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 126

Conread position: 43-546
Cow position: chr15:2617710-2617210 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 57

Conread position: 48-587
Cow position: chr15:68186-67659 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 76

Conread position: 48-613
Cow position: chr15:1600946-1601499 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 141

Conread position: 50-604
Cow position: chr15:6119748-6120297 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 117

Conread position: 51-303
Cow position: chr15:16514423-16514660 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 41, 117

Conread position: 51-615
Cow position: chr15:4952671-4953258 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 41

Conread position: 60-604
Cow position: chr15:4641573-4642120 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 36

Conread position: 63-601
Cow position: chr15:17074982-17074446 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 19

Conread position: 69-613
Cow position: chr15:4688411-4688963 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 99

Conread position: 71-611
Cow position: chr15:41359389-41359928 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 93

Conread position: 71-624
Cow position: chr15:2670916-2670351 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 65

Conread position: 71-625
Cow position: chr15:51911150-51910596 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 140

Conread position: 75-579
Cow position: chr15:3754350-3754865 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 341
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 19, 178

Conread position: 77-596
Cow position: chr15:30044784-30045309 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 134

Conread position: 84-601
Cow position: chr15:12858538-12859058 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 67

Conread position: 90-601
Cow position: chr15:6762695-6762179 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 77

Conread position: 96-576
Cow position: chr15:47340918-47341379 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 328
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 207, 25

Conread position: 102-587
Cow position: chr15:42532463-42532951 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 65

Conread position: 104-378
Cow position: chr15:50309085-50308818 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 202
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 70, 63

Conread position: 104-518
Cow position: chr15:20405201-20404788 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 63

Conread position: 104-571
Cow position: chr15:22154055-22154534 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 64

Conread position: 106-581
Cow position: chr15:27760131-27759655 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 323
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 110

Conread position: 106-601
Cow position: chr15:4140492-4139991 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 61

Conread position: 108-482
Cow position: chr15:3564327-3563969 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 267
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 205, 40

Conread position: 109-311
Cow position: chr15:4199411-4199604 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 65, 58

Conread position: 115-562
Cow position: chr15:21155888-21156341 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 95

Conread position: 116-604
Cow position: chr15:2022019-2021527 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 98

Conread position: 118-625
Cow position: chr15:10477687-10477188 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 14

Conread position: 125-625
Cow position: chr15:23173630-23173131 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 91

Conread position: 136-609
Cow position: chr15:11627855-11628326 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 72

Conread position: 137-596
Cow position: chr15:32858314-32858777 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 30

Conread position: 139-601
Cow position: chr15:26591896-26591429 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 139-604
Cow position: chr15:17266958-17267434 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 76

Conread position: 141-410
Cow position: chr15:37406871-37406616 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 186, 57

Conread position: 144-625
Cow position: chr15:7963579-7963097 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 11

Conread position: 150-372
Cow position: chr15:50948572-50948359 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 181, 60

Conread position: 151-498
Cow position: chr15:25165824-25165475 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 252
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 23, 16

Conread position: 154-615
Cow position: chr15:4673805-4674264 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 45

Conread position: 179-612
Cow position: chr15:2952660-2952219 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 31

Conread position: 219-491
Cow position: chr15:21645579-21645300 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 101, 34

Conread position: 219-534
Cow position: chr15:46231021-46231346 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 98, 35

Conread position: 219-587
Cow position: chr15:15864775-15865135 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 257
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 110, 24

Conread position: 219-601
Cow position: chr15:2898466-2898080 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 219-612
Cow position: chr15:4860421-4860025 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 46

Conread position: 219-622
Cow position: chr15:33700028-33700444 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 27

Conread position: 219-624
Cow position: chr15:21367095-21366680 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 288
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 112, 27

Conread position: 219-625
Cow position: chr15:19724299-19724710 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 37

Conread position: 220-521
Cow position: chr15:30639140-30638843 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 211
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 195, 29

Conread position: 220-612
Cow position: chr15:4380798-4380395 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 33

Conread position: 220-613
Cow position: chr15:24796394-24796790 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 30

Conread position: 221-534
Cow position: chr15:33747138-33747445 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 216
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 180, 34

Conread position: 221-558
Cow position: chr15:20429758-20430101 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 229
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 32, 94

Conread position: 221-613
Cow position: chr15:4077608-4077204 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 34

Conread position: 222-498
Cow position: chr15:53212199-53211924 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 138, 26

Conread position: 222-613
Cow position: chr15:33229526-33229123 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 29

Conread position: 225-625
Cow position: chr15:6281183-6281585 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 30

Conread position: 226-595
Cow position: chr15:6805245-6805623 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 27

Conread position: 252-517
Cow position: chr15:51631697-51631971 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 188
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 95, 113

Conread position: 253-575
Cow position: chr15:17681722-17681397 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 223
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 74, 26

Conread position: 253-596
Cow position: chr15:44666658-44666299 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 253-601
Cow position: chr15:33753727-33753365 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 324

Conread position: 253-613
Cow position: chr15:13286549-13286176 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 216

Conread position: 253-625
Cow position: chr15:4626864-4626479 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 68

Conread position: 254-484
Cow position: chr15:23216182-23215948 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 95, 38

Conread position: 255-573
Cow position: chr15:25122380-25122047 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 220
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 0

Conread position: 255-613
Cow position: chr15:50870016-50870384 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 242
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 94, 58

Conread position: 258-595
Cow position: chr15:11575450-11575101 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 63

Conread position: 261-612
Cow position: chr15:22712296-22712656 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 130

Conread position: 262-596
Cow position: chr15:20413137-20413486 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 328

Conread position: 270-596
Cow position: chr15:6658545-6658201 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 100

Conread position: 280-613
Cow position: chr15:45244174-45244528 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 280-615
Cow position: chr15:33305207-33304856 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 213

Conread position: 298-609
Cow position: chr15:21911710-21911389 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 227
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 37, 92

Conread position: 321-587
Cow position: chr15:24047889-24048169 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 327-611
Cow position: chr15:336321-336610 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 138

Conread position: 327-613
Cow position: chr15:24097236-24097530 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 23, 115

Conread position: 327-625
Cow position: chr15:16514823-16515151 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 229
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 336-625
Cow position: chr15:21840907-21841206 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 290

Conread position: 338-594
Cow position: chr15:30726579-30726320 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 175
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 74, 196

Conread position: 338-613
Cow position: chr15:50345090-50344801 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 341-604
Cow position: chr15:20457970-20458242 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 125

Conread position: 346-539
Cow position: chr15:33455061-33455259 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 152

Conread position: 349-584
Cow position: chr15:1669755-1669998 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 146
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 138

Conread position: 349-611
Cow position: chr15:40344597-40344321 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 208
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 216

Conread position: 355-612
Cow position: chr15:1298994-1298724 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 396-596
Cow position: chr15:18214274-18214480 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 162
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 16, 125

Conread position: 414-612
Cow position: chr15:18067-18264 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 11, 22

Show alignments to all cow chromosomes.