Cow genome map

Conread name: rtra03_h21r1.y1

Conread position: 1-409
Cow position:
Alignm length: 416
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 15

Conread position: 4-604
Cow position:
Alignm length: 621
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 166

Conread position: 6-596
Cow position:
Alignm length: 605
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 6-596
Cow position:
Alignm length: 611
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 164

Conread position: 6-617
Cow position:
Alignm length: 626
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 13

Conread position: 6-625
Cow position:
Alignm length: 645
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 90

Conread position: 9-562
Cow position:
Alignm length: 572
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 205

Conread position: 10-251
Cow position:
Alignm length: 245
Alignm identity: 182
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 31, 159

Conread position: 11-312
Cow position:
Alignm length: 304
Alignm identity: 216
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 30, 157

Conread position: 11-502
Cow position:
Alignm length: 515
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 23

Conread position: 11-604
Cow position:
Alignm length: 617
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 127

Conread position: 11-625
Cow position:
Alignm length: 629
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 23

Conread position: 11-625
Cow position:
Alignm length: 647
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 6

Conread position: 13-293
Cow position:
Alignm length: 283
Alignm identity: 190
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 51

Conread position: 13-310
Cow position:
Alignm length: 301
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 154

Conread position: 13-312
Cow position:
Alignm length: 307
Alignm identity: 223
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 28, 78

Conread position: 13-378
Cow position:
Alignm length: 375
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-390
Cow position:
Alignm length: 385
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-410
Cow position:
Alignm length: 404
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-445
Cow position:
Alignm length: 449
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 91

Conread position: 13-475
Cow position:
Alignm length: 483
Alignm identity: 328
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 28, 51

Conread position: 13-517
Cow position:
Alignm length: 519
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 28

Conread position: 13-520
Cow position:
Alignm length: 528
Alignm identity: 350
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 28, 51

Conread position: 13-523
Cow position:
Alignm length: 523
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 13-555
Cow position:
Alignm length: 558
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 52

Conread position: 13-575
Cow position:
Alignm length: 580
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 35

Conread position: 13-582
Cow position:
Alignm length: 577
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 177

Conread position: 13-587
Cow position:
Alignm length: 594
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 71

Conread position: 13-595
Cow position:
Alignm length: 612
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 47

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 13-596
Cow position:
Alignm length: 612
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 67

Conread position: 13-596
Cow position:
Alignm length: 607
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 612
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 147

Conread position: 13-596
Cow position:
Alignm length: 600
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 47

Conread position: 13-596
Cow position:
Alignm length: 608
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 205

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 606
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 157

Conread position: 13-601
Cow position:
Alignm length: 608
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 80

Conread position: 13-601
Cow position:
Alignm length: 605
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-601
Cow position:
Alignm length: 608
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 15

Conread position: 13-604
Cow position:
Alignm length: 611
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 124

Conread position: 13-604
Cow position:
Alignm length: 608
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position:
Alignm length: 612
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 202

Conread position: 13-604
Cow position:
Alignm length: 611
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-611
Cow position:
Alignm length: 616
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 19

Conread position: 13-615
Cow position:
Alignm length: 616
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 135

Conread position: 13-625
Cow position:
Alignm length: 632
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-625
Cow position:
Alignm length: 633
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 14-301
Cow position:
Alignm length: 290
Alignm identity: 199
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 151

Conread position: 14-410
Cow position:
Alignm length: 416
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 198

Conread position: 14-453
Cow position:
Alignm length: 455
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 14-454
Cow position:
Alignm length: 451
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 10

Conread position: 14-516
Cow position:
Alignm length: 529
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 147

Conread position: 14-570
Cow position:
Alignm length: 572
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 37

Conread position: 14-580
Cow position:
Alignm length: 597
Alignm identity: 393
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 83, 49

Conread position: 14-612
Cow position:
Alignm length: 618
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 70

Conread position: 14-612
Cow position:
Alignm length: 617
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 200

Conread position: 14-613
Cow position:
Alignm length: 612
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 155

Conread position: 14-625
Cow position:
Alignm length: 623
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 115

Conread position: 14-625
Cow position:
Alignm length: 627
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 186

Conread position: 15-371
Cow position:
Alignm length: 366
Alignm identity: 254
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 27, 49

Conread position: 15-410
Cow position:
Alignm length: 402
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 150

Conread position: 15-616
Cow position:
Alignm length: 617
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 49

Conread position: 16-369
Cow position:
Alignm length: 359
Alignm identity: 244
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 25, 195

Conread position: 17-500
Cow position:
Alignm length: 495
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 103

Conread position: 18-613
Cow position:
Alignm length: 604
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 194

Conread position: 19-311
Cow position:
Alignm length: 298
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 203

Conread position: 19-613
Cow position:
Alignm length: 612
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 155

Conread position: 22-499
Cow position:
Alignm length: 492
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 63

Conread position: 22-546
Cow position:
Alignm length: 533
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 9

Conread position: 22-576
Cow position:
Alignm length: 572
Alignm identity: 368
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 37, 20

Conread position: 22-596
Cow position:
Alignm length: 598
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 147

Conread position: 22-625
Cow position:
Alignm length: 621
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 19

Conread position: 25-574
Cow position:
Alignm length: 566
Alignm identity: 361
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 74, 17

Conread position: 26-612
Cow position:
Alignm length: 605
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 22

Conread position: 30-469
Cow position:
Alignm length: 452
Alignm identity: 304
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 14, 72

Conread position: 30-616
Cow position:
Alignm length: 600
Alignm identity: 391
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 135

Conread position: 31-410
Cow position:
Alignm length: 385
Alignm identity: 251
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 61, 17

Conread position: 34-625
Cow position:
Alignm length: 624
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 191

Conread position: 40-397
Cow position:
Alignm length: 364
Alignm identity: 253
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 128

Conread position: 40-581
Cow position:
Alignm length: 557
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 128

Conread position: 43-613
Cow position:
Alignm length: 589
Alignm identity: 383
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 48, 171

Conread position: 47-612
Cow position:
Alignm length: 584
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 76

Conread position: 48-423
Cow position:
Alignm length: 385
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 120

Conread position: 50-615
Cow position:
Alignm length: 587
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 162

Conread position: 51-595
Cow position:
Alignm length: 562
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 117

Conread position: 52-601
Cow position:
Alignm length: 568
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 116

Conread position: 56-587
Cow position:
Alignm length: 545
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 100

Conread position: 57-596
Cow position:
Alignm length: 554
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 111

Conread position: 59-625
Cow position:
Alignm length: 586
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 131

Conread position: 67-292
Cow position:
Alignm length: 228
Alignm identity: 157
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 144

Conread position: 67-574
Cow position:
Alignm length: 524
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 52

Conread position: 67-574
Cow position:
Alignm length: 524
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 52

Conread position: 67-581
Cow position:
Alignm length: 538
Alignm identity: 342
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 30, 62

Conread position: 67-625
Cow position:
Alignm length: 575
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 145

Conread position: 84-596
Cow position:
Alignm length: 531
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 84

Conread position: 84-601
Cow position:
Alignm length: 535
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 36

Conread position: 84-625
Cow position:
Alignm length: 558
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 80

Conread position: 89-585
Cow position:
Alignm length: 508
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 121

Conread position: 90-368
Cow position:
Alignm length: 283
Alignm identity: 188
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 239, 19

Conread position: 90-518
Cow position:
Alignm length: 436
Alignm identity: 275
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 58

Conread position: 90-581
Cow position:
Alignm length: 508
Alignm identity: 331
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 234, 69

Conread position: 90-601
Cow position:
Alignm length: 529
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 77

Conread position: 95-625
Cow position:
Alignm length: 543
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 33

Conread position: 103-612
Cow position:
Alignm length: 534
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 83

Conread position: 104-601
Cow position:
Alignm length: 516
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 63

Conread position: 106-574
Cow position:
Alignm length: 484
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 56

Conread position: 137-625
Cow position:
Alignm length: 501
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 73

Conread position: 140-408
Cow position:
Alignm length: 272
Alignm identity: 192
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 214, 70

Conread position: 141-562
Cow position:
Alignm length: 438
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 32

Conread position: 152-518
Cow position:
Alignm length: 387
Alignm identity: 269
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 15, 58

Conread position: 154-601
Cow position:
Alignm length: 465
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 13

Conread position: 156-611
Cow position:
Alignm length: 468
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 54

Conread position: 219-583
Cow position:
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 219-587
Cow position:
Alignm length: 383
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 34

Conread position: 219-612
Cow position:
Alignm length: 402
Alignm identity: 278
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 112, 27

Conread position: 221-509
Cow position:
Alignm length: 302
Alignm identity: 213
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 99, 32

Conread position: 223-539
Cow position:
Alignm length: 333
Alignm identity: 222
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 49, 24

Conread position: 252-527
Cow position:
Alignm length: 294
Alignm identity: 206
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 70, 0

Conread position: 253-586
Cow position:
Alignm length: 364
Alignm identity: 246
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 78, 0

Conread position: 254-555
Cow position:
Alignm length: 313
Alignm identity: 200
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 150, 100

Conread position: 254-576
Cow position:
Alignm length: 335
Alignm identity: 232
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 108, 59

Conread position: 259-604
Cow position:
Alignm length: 362
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 260-513
Cow position:
Alignm length: 268
Alignm identity: 189
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 76, 133

Conread position: 261-611
Cow position:
Alignm length: 369
Alignm identity: 250
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 72, 116

Conread position: 262-472
Cow position:
Alignm length: 223
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 262-601
Cow position:
Alignm length: 356
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 268-613
Cow position:
Alignm length: 366
Alignm identity: 250
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 65, 53

Conread position: 280-583
Cow position:
Alignm length: 312
Alignm identity: 208
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 53, 149

Conread position: 281-610
Cow position:
Alignm length: 342
Alignm identity: 221
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 33, 139

Conread position: 307-625
Cow position:
Alignm length: 331
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 24

Conread position: 318-557
Cow position:
Alignm length: 252
Alignm identity: 188
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 12, 0

Conread position: 329-615
Cow position:
Alignm length: 299
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 166

Conread position: 338-625
Cow position:
Alignm length: 300
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 251

Conread position: 340-625
Cow position:
Alignm length: 299
Alignm identity: 218
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 13, 207

Conread position: 349-613
Cow position:
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 207

Show alignments to all cow chromosomes.