Cow genome map

Conread name: rtra03_h21r1.y1

Conread position: 6-604
Cow position: chr19:1293106-1293711 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 7-527
Cow position: chr19:36418755-36419263 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 9

Conread position: 8-479
Cow position: chr19:21338073-21337600 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 159

Conread position: 11-397
Cow position: chr19:159092-158710 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 202

Conread position: 12-492
Cow position: chr19:1586496-1586024 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 331
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 15, 85

Conread position: 12-625
Cow position: chr19:38811161-38811758 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 28

Conread position: 13-303
Cow position: chr19:100935-100654 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 28, 94

Conread position: 13-312
Cow position: chr19:6439957-6440247 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-351
Cow position: chr19:20107506-20107832 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 28

Conread position: 13-375
Cow position: chr19:1585232-1585587 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 51

Conread position: 13-378
Cow position: chr19:16317846-16317486 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-410
Cow position: chr19:15445100-15444707 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-410
Cow position: chr19:52148785-52148394 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-463
Cow position: chr19:890433-889980 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-469
Cow position: chr19:12651499-12651957 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-516
Cow position: chr19:12553470-12552962 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-526
Cow position: chr19:1578871-1579391 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 90

Conread position: 13-572
Cow position: chr19:8207241-8206671 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 243

Conread position: 13-575
Cow position: chr19:33640837-33641399 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 44

Conread position: 13-585
Cow position: chr19:19388597-19389174 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr19:175228-175821 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 158

Conread position: 13-596
Cow position: chr19:207266-207853 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 40

Conread position: 13-596
Cow position: chr19:436573-435985 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr19:2270534-2269948 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr19:4388345-4388936 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 157

Conread position: 13-596
Cow position: chr19:12775888-12776462 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 207

Conread position: 13-596
Cow position: chr19:28795553-28794972 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 13-596
Cow position: chr19:30517566-30518159 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr19:33944330-33944919 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr19:39182775-39182187 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr19:40849722-40849136 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 116

Conread position: 13-601
Cow position: chr19:7344798-7345392 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 155

Conread position: 13-601
Cow position: chr19:20611097-20611692 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr19:22512008-22512603 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 14

Conread position: 13-604
Cow position: chr19:16479102-16478506 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chr19:33876180-33876777 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chr19:40016815-40016227 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 20

Conread position: 13-612
Cow position: chr19:165364-164766 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 16

Conread position: 13-624
Cow position: chr19:7490863-7491475 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 14-364
Cow position: chr19:26805220-26804870 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 242
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 12, 95

Conread position: 14-510
Cow position: chr19:35612067-35611561 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 204

Conread position: 14-595
Cow position: chr19:1151438-1152012 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 196

Conread position: 14-596
Cow position: chr19:5732268-5732848 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 109

Conread position: 14-601
Cow position: chr19:43148346-43148939 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 14-612
Cow position: chr19:47189686-47189076 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 198

Conread position: 14-625
Cow position: chr19:17882710-17883346 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 126

Conread position: 15-625
Cow position: chr19:3176236-3176842 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 49

Conread position: 16-312
Cow position: chr19:39340425-39340139 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 81, 47

Conread position: 16-586
Cow position: chr19:39944127-39943558 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 52

Conread position: 16-625
Cow position: chr19:9705419-9704805 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 45

Conread position: 19-581
Cow position: chr19:38559520-38558951 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 194

Conread position: 20-587
Cow position: chr19:28801790-28801233 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 196

Conread position: 22-625
Cow position: chr19:42581515-42580933 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 54

Conread position: 23-311
Cow position: chr19:33905835-33906108 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 193
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 113, 91

Conread position: 24-331
Cow position: chr19:799016-799318 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 25-572
Cow position: chr19:34654326-34653779 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 49

Conread position: 26-610
Cow position: chr19:731210-730624 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 58

Conread position: 27-477
Cow position: chr19:266715-267172 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 189

Conread position: 31-523
Cow position: chr19:23604632-23604152 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 338
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 10, 36

Conread position: 34-596
Cow position: chr19:344167-344736 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 8

Conread position: 34-625
Cow position: chr19:2261650-2261065 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 178

Conread position: 40-613
Cow position: chr19:35621312-35621898 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 177

Conread position: 48-575
Cow position: chr19:5024537-5024027 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 358
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 40, 15

Conread position: 48-604
Cow position: chr19:776315-776874 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 119

Conread position: 51-576
Cow position: chr19:4840639-4840125 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 342
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 18, 97

Conread position: 54-388
Cow position: chr19:16109433-16109758 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 225
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 76

Conread position: 56-581
Cow position: chr19:29364205-29364712 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 9

Conread position: 60-587
Cow position: chr19:24733948-24734485 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 109

Conread position: 66-590
Cow position: chr19:29629019-29628509 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 110

Conread position: 67-308
Cow position: chr19:52466138-52466371 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 40

Conread position: 67-309
Cow position: chr19:354355-354124 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 28, 79

Conread position: 92-625
Cow position: chr19:33594639-33594115 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 63

Conread position: 99-457
Cow position: chr19:33649518-33649158 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 212, 111

Conread position: 103-497
Cow position: chr19:1662885-1663277 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 107

Conread position: 104-587
Cow position: chr19:42465847-42466335 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 107

Conread position: 109-499
Cow position: chr19:55980027-55979638 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 16

Conread position: 113-601
Cow position: chr19:5901892-5902385 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 54

Conread position: 115-378
Cow position: chr19:258125-258381 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 11, 64

Conread position: 116-610
Cow position: chr19:37653046-37653540 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 90

Conread position: 119-375
Cow position: chr19:27614572-27614318 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 207, 91

Conread position: 122-507
Cow position: chr19:20662345-20661951 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 284
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 192, 87

Conread position: 126-499
Cow position: chr19:1354404-1354029 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 7

Conread position: 145-601
Cow position: chr19:33119829-33119366 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 22

Conread position: 149-595
Cow position: chr19:10613132-10613580 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 14

Conread position: 152-613
Cow position: chr19:28369440-28369891 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 58

Conread position: 172-624
Cow position: chr19:33624513-33624953 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 38

Conread position: 173-601
Cow position: chr19:29393267-29393700 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 37

Conread position: 179-563
Cow position: chr19:12600141-12600509 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 31

Conread position: 219-625
Cow position: chr19:34985068-34985471 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 34

Conread position: 220-589
Cow position: chr19:196979-197351 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 33

Conread position: 220-613
Cow position: chr19:40247743-40248148 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 281
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 106, 26

Conread position: 221-570
Cow position: chr19:30758429-30758785 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 256
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 93, 22

Conread position: 236-612
Cow position: chr19:48477550-48477938 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 19

Conread position: 253-493
Cow position: chr19:7293246-7292994 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 262-571
Cow position: chr19:30516024-30515701 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 266-539
Cow position: chr19:6173522-6173245 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 194
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 65

Conread position: 276-546
Cow position: chr19:33675201-33674923 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 195

Conread position: 279-574
Cow position: chr19:5384437-5384744 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 207
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 188

Conread position: 280-569
Cow position: chr19:35994720-35995013 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 38, 84

Conread position: 281-541
Cow position: chr19:42296841-42296562 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 54, 0

Conread position: 297-593
Cow position: chr19:14157063-14156752 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 195

Conread position: 319-611
Cow position: chr19:39340005-39339700 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 158

Conread position: 334-557
Cow position: chr19:14527727-14527952 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 165

Conread position: 349-624
Cow position: chr19:35381976-35381691 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 44, 145

Conread position: 349-625
Cow position: chr19:20403377-20403664 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 278

Conread position: 351-615
Cow position: chr19:799474-799750 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 219

Conread position: 352-581
Cow position: chr19:47099960-47100197 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 61, 121

Show alignments to all cow chromosomes.