Cow genome map

Conread name: rtra03_h21r1.y1

Conread position: 6-469
Cow position: chr23:15504642-15505107 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 155

Conread position: 6-528
Cow position: chr23:29442446-29441922 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 6-596
Cow position: chr23:1049224-1048627 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 206

Conread position: 6-596
Cow position: chr23:2760552-2761145 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 74

Conread position: 8-303
Cow position: chr23:2410720-2410434 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 34, 161

Conread position: 8-596
Cow position: chr23:21773255-21772663 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 161

Conread position: 9-500
Cow position: chr23:40888094-40888588 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 208

Conread position: 10-469
Cow position: chr23:644074-643622 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 10

Conread position: 12-613
Cow position: chr23:11815192-11814583 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 154

Conread position: 13-312
Cow position: chr23:7492688-7492400 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 201
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 73, 20

Conread position: 13-312
Cow position: chr23:22989220-22988931 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 155

Conread position: 13-320
Cow position: chr23:2579251-2579545 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-323
Cow position: chr23:4637664-4637366 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 80

Conread position: 13-324
Cow position: chr23:31647414-31647120 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 28, 51

Conread position: 13-386
Cow position: chr23:35928578-35928948 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 28

Conread position: 13-410
Cow position: chr23:943637-944030 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-410
Cow position: chr23:36028721-36028329 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 134

Conread position: 13-498
Cow position: chr23:19492216-19492704 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 141

Conread position: 13-503
Cow position: chr23:8705520-8706011 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-583
Cow position: chr23:11713011-11712436 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-587
Cow position: chr23:4265959-4265381 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-587
Cow position: chr23:22169547-22170143 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-587
Cow position: chr23:24119213-24119790 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 92

Conread position: 13-587
Cow position: chr23:41143097-41143676 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr23:1958789-1959373 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 79

Conread position: 13-596
Cow position: chr23:2024425-2023838 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 32

Conread position: 13-596
Cow position: chr23:2368480-2369062 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 156

Conread position: 13-596
Cow position: chr23:4891351-4891942 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-596
Cow position: chr23:5624919-5624326 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 202

Conread position: 13-596
Cow position: chr23:11343159-11343743 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 54

Conread position: 13-596
Cow position: chr23:14960291-14959705 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 134

Conread position: 13-596
Cow position: chr23:15216177-15215591 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 155

Conread position: 13-596
Cow position: chr23:15528241-15528833 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-596
Cow position: chr23:20153563-20152974 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr23:27401797-27402383 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 19

Conread position: 13-596
Cow position: chr23:37199859-37199264 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 13-601
Cow position: chr23:609385-609980 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr23:2321285-2320696 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr23:3285415-3286010 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr23:3417672-3417077 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr23:5396924-5396329 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr23:10937665-10937051 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr23:21008948-21008353 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr23:28084437-28083842 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chr23:3709061-3709658 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 30

Conread position: 13-604
Cow position: chr23:14265009-14265601 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 28

Conread position: 13-625
Cow position: chr23:17877214-17876604 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 70

Conread position: 14-408
Cow position: chr23:31892706-31893084 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 272
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 315, 27

Conread position: 14-475
Cow position: chr23:30238923-30239389 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 198

Conread position: 14-478
Cow position: chr23:5871903-5871439 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 181

Conread position: 14-556
Cow position: chr23:6222511-6223052 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 151

Conread position: 14-613
Cow position: chr23:7359136-7359719 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 50

Conread position: 15-360
Cow position: chr23:1800297-1800631 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 27, 90

Conread position: 15-596
Cow position: chr23:2720114-2720703 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 154

Conread position: 15-604
Cow position: chr23:4516199-4516791 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 153

Conread position: 16-578
Cow position: chr23:8099911-8100490 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 50

Conread position: 16-587
Cow position: chr23:38583604-38584152 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 51

Conread position: 16-596
Cow position: chr23:22144652-22144064 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 153

Conread position: 19-596
Cow position: chr23:2792102-2791516 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 153

Conread position: 22-445
Cow position: chr23:7043147-7042731 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 296
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 5, 43

Conread position: 22-586
Cow position: chr23:15039637-15039084 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 380
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 19, 146

Conread position: 24-297
Cow position: chr23:5410935-5411199 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 191
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 17, 197

Conread position: 24-311
Cow position: chr23:24612902-24613174 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 73, 17

Conread position: 26-347
Cow position: chr23:29448610-29448298 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 15

Conread position: 26-605
Cow position: chr23:16496601-16496020 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 143

Conread position: 29-604
Cow position: chr23:4533031-4532443 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 140

Conread position: 42-569
Cow position: chr23:16367615-16368145 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 349
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 18, 28

Conread position: 45-364
Cow position: chr23:4559286-4559583 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 272, 59

Conread position: 48-422
Cow position: chr23:1552629-1552267 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 257
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 37, 146

Conread position: 65-573
Cow position: chr23:33575155-33574649 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 345
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 32, 143

Conread position: 66-573
Cow position: chr23:24516556-24517055 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 146

Conread position: 73-601
Cow position: chr23:3301576-3302106 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 17

Conread position: 75-604
Cow position: chr23:30634875-30634340 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 136

Conread position: 84-595
Cow position: chr23:17845737-17846243 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 90-457
Cow position: chr23:4807129-4807505 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 270
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 58, 130

Conread position: 90-534
Cow position: chr23:2437444-2437002 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 120

Conread position: 90-601
Cow position: chr23:31703630-31704146 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 77

Conread position: 106-609
Cow position: chr23:25671006-25670521 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 105

Conread position: 108-429
Cow position: chr23:33434455-33434140 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 59

Conread position: 113-604
Cow position: chr23:4436391-4436873 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 54

Conread position: 116-498
Cow position: chr23:670652-671036 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 51

Conread position: 118-601
Cow position: chr23:14216459-14215975 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 49

Conread position: 119-625
Cow position: chr23:20390251-20389747 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 92

Conread position: 120-601
Cow position: chr23:28987115-28987594 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 47

Conread position: 125-586
Cow position: chr23:3878345-3877907 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 42

Conread position: 139-585
Cow position: chr23:29042566-29043016 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 143-527
Cow position: chr23:14790272-14790658 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 24

Conread position: 151-625
Cow position: chr23:11078084-11078555 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 59

Conread position: 159-557
Cow position: chr23:2367912-2368314 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 65

Conread position: 161-410
Cow position: chr23:8290184-8290427 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 156, 47

Conread position: 218-624
Cow position: chr23:9194036-9193624 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 283
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 111, 36

Conread position: 219-596
Cow position: chr23:2737083-2737468 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 37

Conread position: 219-617
Cow position: chr23:31276358-31276764 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 24

Conread position: 253-596
Cow position: chr23:11079271-11079630 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 253-625
Cow position: chr23:1326426-1326041 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 131

Conread position: 263-573
Cow position: chr23:27975030-27974704 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 188

Conread position: 263-601
Cow position: chr23:771594-771240 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 275

Conread position: 264-613
Cow position: chr23:11127912-11128283 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 268-616
Cow position: chr23:14840268-14839908 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 251
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 65, 37

Conread position: 280-612
Cow position: chr23:20171283-20170941 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 247
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 50, 213

Conread position: 284-625
Cow position: chr23:25357264-25357620 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 347

Conread position: 325-573
Cow position: chr23:12080526-12080769 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 29, 76

Conread position: 347-611
Cow position: chr23:16999432-16999701 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 237

Conread position: 348-576
Cow position: chr23:7065773-7065540 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 176
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 0

Show alignments to all cow chromosomes.