Cow genome map

Conread name: rtra03_h21r1.y1

Conread position: 4-625
Cow position:
Alignm length: 639
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 208

Conread position: 6-398
Cow position:
Alignm length: 402
Alignm identity: 278
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 165

Conread position: 6-596
Cow position:
Alignm length: 609
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 9-587
Cow position:
Alignm length: 602
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 7

Conread position: 11-410
Cow position:
Alignm length: 408
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 6

Conread position: 11-417
Cow position:
Alignm length: 414
Alignm identity: 249
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 33, 207

Conread position: 11-570
Cow position:
Alignm length: 576
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 8

Conread position: 11-574
Cow position:
Alignm length: 581
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 160

Conread position: 11-604
Cow position:
Alignm length: 617
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 11-613
Cow position:
Alignm length: 620
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 30

Conread position: 13-303
Cow position:
Alignm length: 296
Alignm identity: 217
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 28, 158

Conread position: 13-312
Cow position:
Alignm length: 303
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-330
Cow position:
Alignm length: 320
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 181

Conread position: 13-408
Cow position:
Alignm length: 403
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 124

Conread position: 13-408
Cow position:
Alignm length: 403
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 124

Conread position: 13-410
Cow position:
Alignm length: 405
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 161

Conread position: 13-457
Cow position:
Alignm length: 467
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 13-493
Cow position:
Alignm length: 497
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-499
Cow position:
Alignm length: 503
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-520
Cow position:
Alignm length: 517
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 83

Conread position: 13-537
Cow position:
Alignm length: 541
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-541
Cow position:
Alignm length: 541
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 91

Conread position: 13-584
Cow position:
Alignm length: 590
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-587
Cow position:
Alignm length: 592
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-587
Cow position:
Alignm length: 592
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-588
Cow position:
Alignm length: 593
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 200

Conread position: 13-595
Cow position:
Alignm length: 601
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-595
Cow position:
Alignm length: 602
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-596
Cow position:
Alignm length: 604
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 616
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 168

Conread position: 13-596
Cow position:
Alignm length: 602
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 606
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 620
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 608
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 610
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-604
Cow position:
Alignm length: 612
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position:
Alignm length: 610
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 156

Conread position: 13-605
Cow position:
Alignm length: 611
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-612
Cow position:
Alignm length: 628
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 128

Conread position: 13-612
Cow position:
Alignm length: 619
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 42

Conread position: 13-625
Cow position:
Alignm length: 642
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 198

Conread position: 13-625
Cow position:
Alignm length: 640
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 25

Conread position: 14-366
Cow position:
Alignm length: 357
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 27

Conread position: 14-435
Cow position:
Alignm length: 426
Alignm identity: 276
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 32, 76

Conread position: 14-476
Cow position:
Alignm length: 476
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 117

Conread position: 14-596
Cow position:
Alignm length: 602
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 14-602
Cow position:
Alignm length: 606
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 18

Conread position: 14-604
Cow position:
Alignm length: 609
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 77

Conread position: 14-613
Cow position:
Alignm length: 619
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 50

Conread position: 14-615
Cow position:
Alignm length: 619
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 199

Conread position: 14-615
Cow position:
Alignm length: 620
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 15-596
Cow position:
Alignm length: 603
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 154

Conread position: 15-608
Cow position:
Alignm length: 610
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 196

Conread position: 15-613
Cow position:
Alignm length: 627
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 113

Conread position: 15-623
Cow position:
Alignm length: 643
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 110

Conread position: 16-303
Cow position:
Alignm length: 292
Alignm identity: 203
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 26, 198

Conread position: 16-303
Cow position:
Alignm length: 294
Alignm identity: 209
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 85

Conread position: 16-534
Cow position:
Alignm length: 533
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 153

Conread position: 16-624
Cow position:
Alignm length: 628
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 93

Conread position: 19-372
Cow position:
Alignm length: 360
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 146

Conread position: 19-588
Cow position:
Alignm length: 587
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 130

Conread position: 19-609
Cow position:
Alignm length: 616
Alignm identity: 388
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 25, 139

Conread position: 23-604
Cow position:
Alignm length: 600
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 18

Conread position: 24-587
Cow position:
Alignm length: 578
Alignm identity: 370
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 67, 80

Conread position: 24-596
Cow position:
Alignm length: 594
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 145

Conread position: 26-613
Cow position:
Alignm length: 606
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 122

Conread position: 26-615
Cow position:
Alignm length: 613
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 174

Conread position: 26-621
Cow position:
Alignm length: 608
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 75

Conread position: 30-596
Cow position:
Alignm length: 586
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 139

Conread position: 30-613
Cow position:
Alignm length: 600
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 34

Conread position: 34-576
Cow position:
Alignm length: 553
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 58

Conread position: 48-609
Cow position:
Alignm length: 585
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 120

Conread position: 50-587
Cow position:
Alignm length: 561
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 85

Conread position: 51-517
Cow position:
Alignm length: 480
Alignm identity: 308
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 42, 58

Conread position: 51-574
Cow position:
Alignm length: 541
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 117

Conread position: 51-625
Cow position:
Alignm length: 596
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 81

Conread position: 57-612
Cow position:
Alignm length: 575
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 9

Conread position: 60-609
Cow position:
Alignm length: 561
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 150

Conread position: 65-378
Cow position:
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 103

Conread position: 68-586
Cow position:
Alignm length: 539
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 104

Conread position: 74-572
Cow position:
Alignm length: 519
Alignm identity: 337
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 84

Conread position: 84-362
Cow position:
Alignm length: 285
Alignm identity: 212
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 9, 127

Conread position: 97-572
Cow position:
Alignm length: 481
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 113

Conread position: 103-462
Cow position:
Alignm length: 373
Alignm identity: 263
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 221, 107

Conread position: 103-587
Cow position:
Alignm length: 500
Alignm identity: 327
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 202, 99

Conread position: 103-612
Cow position:
Alignm length: 531
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 107

Conread position: 103-613
Cow position:
Alignm length: 529
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 107

Conread position: 104-596
Cow position:
Alignm length: 509
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 63

Conread position: 104-604
Cow position:
Alignm length: 519
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 10

Conread position: 104-610
Cow position:
Alignm length: 538
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 106

Conread position: 120-615
Cow position:
Alignm length: 512
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 47

Conread position: 128-526
Cow position:
Alignm length: 415
Alignm identity: 295
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 32, 83

Conread position: 132-613
Cow position:
Alignm length: 495
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 40

Conread position: 140-519
Cow position:
Alignm length: 388
Alignm identity: 250
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 193, 70

Conread position: 142-485
Cow position:
Alignm length: 370
Alignm identity: 262
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 91, 75

Conread position: 147-601
Cow position:
Alignm length: 472
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 20

Conread position: 148-453
Cow position:
Alignm length: 319
Alignm identity: 219
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 19

Conread position: 152-323
Cow position:
Alignm length: 172
Alignm identity: 126
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 152-601
Cow position:
Alignm length: 467
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 15

Conread position: 172-604
Cow position:
Alignm length: 448
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 38

Conread position: 173-587
Cow position:
Alignm length: 429
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 37

Conread position: 179-596
Cow position:
Alignm length: 434
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 32

Conread position: 196-455
Cow position:
Alignm length: 274
Alignm identity: 198
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 21, 13

Conread position: 218-612
Cow position:
Alignm length: 406
Alignm identity: 282
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 175, 33

Conread position: 218-625
Cow position:
Alignm length: 424
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 25

Conread position: 219-469
Cow position:
Alignm length: 263
Alignm identity: 187
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 101, 34

Conread position: 219-555
Cow position:
Alignm length: 347
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 36

Conread position: 219-558
Cow position:
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 34

Conread position: 219-576
Cow position:
Alignm length: 372
Alignm identity: 236
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 98, 7

Conread position: 219-576
Cow position:
Alignm length: 366
Alignm identity: 236
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 182, 25

Conread position: 219-587
Cow position:
Alignm length: 383
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 37

Conread position: 219-595
Cow position:
Alignm length: 393
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 34

Conread position: 219-596
Cow position:
Alignm length: 391
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 34

Conread position: 219-605
Cow position:
Alignm length: 401
Alignm identity: 279
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 49, 29

Conread position: 220-604
Cow position:
Alignm length: 397
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 33

Conread position: 222-575
Cow position:
Alignm length: 368
Alignm identity: 257
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 110, 26

Conread position: 222-605
Cow position:
Alignm length: 401
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 33

Conread position: 237-479
Cow position:
Alignm length: 258
Alignm identity: 179
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 18

Conread position: 243-559
Cow position:
Alignm length: 324
Alignm identity: 219
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 107, 70

Conread position: 252-612
Cow position:
Alignm length: 374
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 252-625
Cow position:
Alignm length: 390
Alignm identity: 261
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 65, 256

Conread position: 253-572
Cow position:
Alignm length: 333
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 253-587
Cow position:
Alignm length: 349
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 253-612
Cow position:
Alignm length: 382
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 254-522
Cow position:
Alignm length: 281
Alignm identity: 159
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 254-562
Cow position:
Alignm length: 322
Alignm identity: 212
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 96, 81

Conread position: 259-585
Cow position:
Alignm length: 344
Alignm identity: 240
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 25, 37

Conread position: 259-587
Cow position:
Alignm length: 340
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 264-505
Cow position:
Alignm length: 249
Alignm identity: 168
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 66, 194

Conread position: 268-610
Cow position:
Alignm length: 370
Alignm identity: 249
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 62, 118

Conread position: 268-610
Cow position:
Alignm length: 370
Alignm identity: 249
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 62, 118

Conread position: 281-575
Cow position:
Alignm length: 308
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 282-541
Cow position:
Alignm length: 279
Alignm identity: 189
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 284-570
Cow position:
Alignm length: 298
Alignm identity: 196
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 199

Conread position: 289-586
Cow position:
Alignm length: 312
Alignm identity: 219
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 40, 0

Conread position: 294-617
Cow position:
Alignm length: 338
Alignm identity: 218
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 160

Conread position: 302-612
Cow position:
Alignm length: 334
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 284

Conread position: 302-613
Cow position:
Alignm length: 321
Alignm identity: 220
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 27, 129

Conread position: 326-615
Cow position:
Alignm length: 307
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 237

Conread position: 327-481
Cow position:
Alignm length: 165
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 334-625
Cow position:
Alignm length: 304
Alignm identity: 218
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 19, 293

Conread position: 436-625
Cow position:
Alignm length: 193
Alignm identity: 150
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 61, 182

Show alignments to all cow chromosomes.