Cow genome map

Conread name: rtra03_h21r1.y1

Conread position: 1-297
Cow position: chr25:36814275-36813988 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 40, 17

Conread position: 2-402
Cow position: chr25:12835131-12834751 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 278
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 16

Conread position: 4-570
Cow position: chr25:27534268-27533700 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 371
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 19, 149

Conread position: 6-604
Cow position: chr25:25481164-25480554 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 26

Conread position: 11-424
Cow position: chr25:15366581-15366970 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 278
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 86, 30

Conread position: 13-303
Cow position: chr25:18268507-18268217 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 28, 142

Conread position: 13-312
Cow position: chr25:34344258-34343969 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 31, 148

Conread position: 13-331
Cow position: chr25:18159321-18159028 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 28, 21

Conread position: 13-454
Cow position: chr25:18179474-18179911 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 51

Conread position: 13-487
Cow position: chr25:22150522-22151000 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-489
Cow position: chr25:16923687-16923216 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 13-491
Cow position: chr25:17555022-17554541 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 102

Conread position: 13-515
Cow position: chr25:39387082-39387588 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 156

Conread position: 13-558
Cow position: chr25:33027800-33027265 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 351
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 7

Conread position: 13-574
Cow position: chr25:33688773-33688207 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-585
Cow position: chr25:13959518-13960090 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 14

Conread position: 13-585
Cow position: chr25:35755795-35755220 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 9

Conread position: 13-595
Cow position: chr25:32578211-32577627 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 143

Conread position: 13-596
Cow position: chr25:12939761-12939171 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-596
Cow position: chr25:18887021-18886445 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr25:20633213-20633797 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-596
Cow position: chr25:26281470-26282061 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-596
Cow position: chr25:28862317-28862908 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr25:35568435-35567848 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 79

Conread position: 13-601
Cow position: chr25:19337871-19337284 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr25:27019791-27019198 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-603
Cow position: chr25:35553138-35553710 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 110

Conread position: 13-604
Cow position: chr25:17586571-17585978 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 28

Conread position: 13-604
Cow position: chr25:18190941-18190332 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 168

Conread position: 13-604
Cow position: chr25:29803302-29802701 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-612
Cow position: chr25:18264672-18265248 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 119

Conread position: 13-613
Cow position: chr25:18489499-18490119 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 67

Conread position: 13-625
Cow position: chr25:18128688-18129291 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 55

Conread position: 13-625
Cow position: chr25:18209250-18208622 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 84

Conread position: 13-625
Cow position: chr25:21949244-21949862 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 14-422
Cow position: chr25:12083385-12082985 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 143

Conread position: 14-547
Cow position: chr25:11828084-11827548 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 367
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 27, 213

Conread position: 14-556
Cow position: chr25:25109579-25109015 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 198

Conread position: 14-604
Cow position: chr25:11043070-11043663 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 155

Conread position: 14-613
Cow position: chr25:9394874-9395463 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 170

Conread position: 14-613
Cow position: chr25:35626762-35626178 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 27

Conread position: 14-625
Cow position: chr25:392722-393326 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 180

Conread position: 16-312
Cow position: chr25:14962489-14962208 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 95

Conread position: 22-612
Cow position: chr25:11665129-11665725 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 26

Conread position: 25-499
Cow position: chr25:36511771-36512246 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 20

Conread position: 26-360
Cow position: chr25:33261916-33262231 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 16, 66

Conread position: 29-613
Cow position: chr25:37647902-37648483 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 195

Conread position: 33-477
Cow position: chr25:30810275-30810710 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 31

Conread position: 34-570
Cow position: chr25:26753850-26753312 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 354
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 7, 127

Conread position: 36-570
Cow position: chr25:22431226-22431760 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 360
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 9, 49

Conread position: 48-382
Cow position: chr25:39555139-39554815 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 229
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 81, 45

Conread position: 48-579
Cow position: chr25:23773744-23773233 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 15

Conread position: 48-613
Cow position: chr25:2594263-2594824 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 17

Conread position: 53-473
Cow position: chr25:24449744-24449330 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 47

Conread position: 59-612
Cow position: chr25:41098702-41098137 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 109

Conread position: 60-369
Cow position: chr25:11955266-11955582 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 231
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 31, 152

Conread position: 63-604
Cow position: chr25:41120506-41121048 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 103

Conread position: 67-541
Cow position: chr25:21542824-21543301 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 325
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 17, 82

Conread position: 68-604
Cow position: chr25:26781580-26781042 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 100

Conread position: 81-576
Cow position: chr25:19327150-19327639 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 321
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 16, 131

Conread position: 104-477
Cow position: chr25:35561959-35561586 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 266
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 37, 112

Conread position: 106-612
Cow position: chr25:41136192-41135691 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 106

Conread position: 118-596
Cow position: chr25:34509625-34509143 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 49

Conread position: 122-507
Cow position: chr25:1973123-1972734 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 287
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 42, 34

Conread position: 124-578
Cow position: chr25:3374083-3373622 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 317
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 191, 64

Conread position: 132-477
Cow position: chr25:14824353-14824037 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 241
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 186, 83

Conread position: 148-613
Cow position: chr25:23740659-23740194 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 62

Conread position: 157-601
Cow position: chr25:7223839-7223391 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 10

Conread position: 172-613
Cow position: chr25:33575118-33574680 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 38

Conread position: 179-595
Cow position: chr25:24655552-24655134 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 39

Conread position: 219-515
Cow position: chr25:34368781-34369084 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 224
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 82, 34

Conread position: 219-575
Cow position: chr25:33065469-33065826 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 250
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 105, 30

Conread position: 219-595
Cow position: chr25:36350388-36350773 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 34

Conread position: 219-596
Cow position: chr25:34673924-34673550 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 219-611
Cow position: chr25:23999531-23999132 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 31

Conread position: 219-612
Cow position: chr25:26754933-26755338 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 29

Conread position: 219-612
Cow position: chr25:28421049-28420651 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 31

Conread position: 219-613
Cow position: chr25:18071886-18072277 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 19

Conread position: 219-613
Cow position: chr25:25826103-25826501 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 36

Conread position: 220-581
Cow position: chr25:13942079-13941719 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 254
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 179, 36

Conread position: 221-534
Cow position: chr25:20495222-20495541 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 22

Conread position: 222-611
Cow position: chr25:21967820-21968231 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 276
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 104, 26

Conread position: 230-612
Cow position: chr25:10634346-10633954 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 18

Conread position: 233-612
Cow position: chr25:10136486-10136871 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 14

Conread position: 234-421
Cow position: chr25:29134441-29134247 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 9, 36

Conread position: 254-572
Cow position: chr25:24670889-24670559 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 230
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 95, 138

Conread position: 256-559
Cow position: chr25:30326834-30326522 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 203
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 31

Conread position: 261-543
Cow position: chr25:10704141-10704438 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 59, 0

Conread position: 276-613
Cow position: chr25:26930795-26931149 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 288-612
Cow position: chr25:3172687-3172346 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 294

Conread position: 301-596
Cow position: chr25:23326301-23325990 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 315-485
Cow position: chr25:23912773-23912954 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 176

Conread position: 327-625
Cow position: chr25:9958298-9957992 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 28, 177

Conread position: 349-575
Cow position: chr25:24637366-24637131 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 140

Conread position: 354-498
Cow position: chr25:4373042-4372889 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 43, 0

Show alignments to all cow chromosomes.