Cow genome map
| Conread name: | rtra03_h21r1.y1 |
| Conread position: | 1-484 |
| Cow position: | chr26:23590354-23590831 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 11 |
| Conread position: | 5-596 |
| Cow position: | chr26:14896699-14897293 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 15 |
| Conread position: | 6-459 |
| Cow position: | chr26:6844818-6844360 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 207 |
| Conread position: | 6-564 |
| Cow position: | chr26:34271766-34272311 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 163 |
| Conread position: | 6-572 |
| Cow position: | chr26:18035598-18036161 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 68 |
| Conread position: | 9-601 |
| Cow position: | chr26:4729625-4729027 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 203 |
| Conread position: | 11-330 |
| Cow position: | chr26:1884130-1883816 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 30, 6 |
| Conread position: | 11-609 |
| Cow position: | chr26:9841705-9841095 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 11-624 |
| Cow position: | chr26:30625907-30625294 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 125 |
| Conread position: | 13-351 |
| Cow position: | chr26:18781837-18781506 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-368 |
| Cow position: | chr26:30785477-30785827 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-459 |
| Cow position: | chr26:19348792-19348348 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-472 |
| Cow position: | chr26:3027915-3027459 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 199 |
| Conread position: | 13-477 |
| Cow position: | chr26:2605231-2604773 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 208 |
| Conread position: | 13-491 |
| Cow position: | chr26:1638332-1637853 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 33 |
| Conread position: | 13-585 |
| Cow position: | chr26:17326864-17327441 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-586 |
| Cow position: | chr26:33950664-33950090 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 13-596 |
| Cow position: | chr26:2201236-2201822 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-596 |
| Cow position: | chr26:17394189-17393603 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-596 |
| Cow position: | chr26:23889114-23889704 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 13-596 |
| Cow position: | chr26:35423202-35423791 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-601 |
| Cow position: | chr26:1389690-1390279 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 13-601 |
| Cow position: | chr26:2349469-2348874 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-601 |
| Cow position: | chr26:9114739-9115336 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-601 |
| Cow position: | chr26:12585834-12585241 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 13-601 |
| Cow position: | chr26:18804661-18804073 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-601 |
| Cow position: | chr26:28707357-28706761 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-601 |
| Cow position: | chr26:35122540-35121945 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-604 |
| Cow position: | chr26:14488551-14487957 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 154 |
| Conread position: | 13-613 |
| Cow position: | chr26:4548312-4548917 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 124 |
| Conread position: | 14-410 |
| Cow position: | chr26:8087773-8088165 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 198 |
| Conread position: | 14-587 |
| Cow position: | chr26:14365527-14364954 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 183 |
| Conread position: | 14-611 |
| Cow position: | chr26:6320814-6321414 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 153 |
| Conread position: | 14-625 |
| Cow position: | chr26:12668155-12668765 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 201 |
| Conread position: | 16-611 |
| Cow position: | chr26:35335508-35334905 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 19-312 |
| Cow position: | chr26:9838755-9838478 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 25-323 |
| Cow position: | chr26:4601477-4601192 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 26-587 |
| Cow position: | chr26:8654610-8654057 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 32-596 |
| Cow position: | chr26:5679253-5679822 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 136 |
| Conread position: | 54-613 |
| Cow position: | chr26:11289901-11290454 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 113 |
| Conread position: | 67-312 |
| Cow position: | chr26:18518580-18518821 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 67-583 |
| Cow position: | chr26:21535119-21535639 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 101 |
| Conread position: | 67-613 |
| Cow position: | chr26:17329264-17329820 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 379 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 96-596 |
| Cow position: | chr26:17429688-17429183 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 114 |
| Conread position: | 97-611 |
| Cow position: | chr26:17994206-17993684 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 114 |
| Conread position: | 100-478 |
| Cow position: | chr26:21823824-21823462 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 226, 21 |
| Conread position: | 101-613 |
| Cow position: | chr26:25341124-25340627 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 353 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 103-583 |
| Cow position: | chr26:11362889-11362392 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 107 |
| Conread position: | 104-369 |
| Cow position: | chr26:27940931-27941189 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 109-391 |
| Cow position: | chr26:22619194-22619468 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 55, 83 |
| Conread position: | 113-601 |
| Cow position: | chr26:26285667-26286156 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 54 |
| Conread position: | 118-364 |
| Cow position: | chr26:25189554-25189792 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 119-576 |
| Cow position: | chr26:35520591-35520126 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 203, 50 |
| Conread position: | 134-616 |
| Cow position: | chr26:4324865-4324402 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 328 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 192, 38 |
| Conread position: | 136-610 |
| Cow position: | chr26:10699664-10699192 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 74 |
| Conread position: | 139-604 |
| Cow position: | chr26:1620484-1620955 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 146-484 |
| Cow position: | chr26:35559666-35559335 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 167, 64 |
| Conread position: | 146-613 |
| Cow position: | chr26:20496373-20496845 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 21 |
| Conread position: | 153-576 |
| Cow position: | chr26:34034533-34034961 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 292 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 201, 65 |
| Conread position: | 172-601 |
| Cow position: | chr26:13183174-13183607 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 38 |
| Conread position: | 189-624 |
| Cow position: | chr26:31139062-31138628 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 125, 59 |
| Conread position: | 219-492 |
| Cow position: | chr26:6425936-6426218 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 219-559 |
| Cow position: | chr26:31793633-31793979 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 219-587 |
| Cow position: | chr26:30594725-30594348 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 219-601 |
| Cow position: | chr26:35191643-35191251 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 219-604 |
| Cow position: | chr26:34014738-34015143 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 253-587 |
| Cow position: | chr26:1347061-1346713 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 253-613 |
| Cow position: | chr26:12258846-12258478 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 224 |
| Conread position: | 259-601 |
| Cow position: | chr26:4440814-4440467 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 301 |
| Conread position: | 264-625 |
| Cow position: | chr26:22660333-22659963 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 317 |
| Conread position: | 322-583 |
| Cow position: | chr26:4600132-4599852 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 18, 200 |
| Conread position: | 336-613 |
| Cow position: | chr26:9100960-9100671 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 127 |
| Conread position: | 341-571 |
| Cow position: | chr26:19469436-19469209 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 74 |
| Conread position: | 350-605 |
| Cow position: | chr26:7381574-7381842 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 51, 214 |
| Conread position: | 353-611 |
| Cow position: | chr26:11262780-11263043 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 205 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 44, 217 |
Show alignments to all cow chromosomes.