Cow genome map

Conread name: rtra03_h21r1.y1

Conread position: 1-484
Cow position:
Alignm length: 498
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 11

Conread position: 5-596
Cow position:
Alignm length: 610
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 15

Conread position: 6-459
Cow position:
Alignm length: 470
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 207

Conread position: 6-564
Cow position:
Alignm length: 575
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 6-572
Cow position:
Alignm length: 586
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 68

Conread position: 9-601
Cow position:
Alignm length: 610
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 203

Conread position: 11-330
Cow position:
Alignm length: 328
Alignm identity: 230
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 30, 6

Conread position: 11-609
Cow position:
Alignm length: 624
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 11-624
Cow position:
Alignm length: 632
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 125

Conread position: 13-351
Cow position:
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-368
Cow position:
Alignm length: 363
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-459
Cow position:
Alignm length: 460
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-472
Cow position:
Alignm length: 470
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-477
Cow position:
Alignm length: 475
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 13-491
Cow position:
Alignm length: 494
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 33

Conread position: 13-585
Cow position:
Alignm length: 590
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-586
Cow position:
Alignm length: 591
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 82

Conread position: 13-596
Cow position:
Alignm length: 601
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 601
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 604
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 134

Conread position: 13-596
Cow position:
Alignm length: 604
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 607
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 83

Conread position: 13-601
Cow position:
Alignm length: 608
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 611
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 607
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 88

Conread position: 13-601
Cow position:
Alignm length: 607
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 608
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 607
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position:
Alignm length: 612
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 154

Conread position: 13-613
Cow position:
Alignm length: 626
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 124

Conread position: 14-410
Cow position:
Alignm length: 405
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 198

Conread position: 14-587
Cow position:
Alignm length: 589
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 183

Conread position: 14-611
Cow position:
Alignm length: 617
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 153

Conread position: 14-625
Cow position:
Alignm length: 629
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 201

Conread position: 16-611
Cow position:
Alignm length: 620
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 23

Conread position: 19-312
Cow position:
Alignm length: 298
Alignm identity: 203
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 21, 122

Conread position: 25-323
Cow position:
Alignm length: 302
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 26-587
Cow position:
Alignm length: 578
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 41

Conread position: 32-596
Cow position:
Alignm length: 583
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 136

Conread position: 54-613
Cow position:
Alignm length: 576
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 113

Conread position: 67-312
Cow position:
Alignm length: 252
Alignm identity: 170
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 11

Conread position: 67-583
Cow position:
Alignm length: 533
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 101

Conread position: 67-613
Cow position:
Alignm length: 577
Alignm identity: 379
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 26, 39

Conread position: 96-596
Cow position:
Alignm length: 517
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 114

Conread position: 97-611
Cow position:
Alignm length: 534
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 114

Conread position: 100-478
Cow position:
Alignm length: 392
Alignm identity: 276
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 226, 21

Conread position: 101-613
Cow position:
Alignm length: 531
Alignm identity: 353
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 48, 19

Conread position: 103-583
Cow position:
Alignm length: 509
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 107

Conread position: 104-369
Cow position:
Alignm length: 271
Alignm identity: 195
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 70, 63

Conread position: 109-391
Cow position:
Alignm length: 288
Alignm identity: 201
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 55, 83

Conread position: 113-601
Cow position:
Alignm length: 505
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 54

Conread position: 118-364
Cow position:
Alignm length: 252
Alignm identity: 172
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 56, 49

Conread position: 119-576
Cow position:
Alignm length: 481
Alignm identity: 311
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 203, 50

Conread position: 134-616
Cow position:
Alignm length: 491
Alignm identity: 328
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 192, 38

Conread position: 136-610
Cow position:
Alignm length: 489
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 74

Conread position: 139-604
Cow position:
Alignm length: 487
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 146-484
Cow position:
Alignm length: 352
Alignm identity: 245
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 167, 64

Conread position: 146-613
Cow position:
Alignm length: 490
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 21

Conread position: 153-576
Cow position:
Alignm length: 446
Alignm identity: 292
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 201, 65

Conread position: 172-601
Cow position:
Alignm length: 447
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 38

Conread position: 189-624
Cow position:
Alignm length: 452
Alignm identity: 304
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 125, 59

Conread position: 219-492
Cow position:
Alignm length: 288
Alignm identity: 207
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 101, 34

Conread position: 219-559
Cow position:
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 27

Conread position: 219-587
Cow position:
Alignm length: 383
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 219-601
Cow position:
Alignm length: 399
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 219-604
Cow position:
Alignm length: 411
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 36

Conread position: 253-587
Cow position:
Alignm length: 349
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 253-613
Cow position:
Alignm length: 373
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 224

Conread position: 259-601
Cow position:
Alignm length: 358
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 301

Conread position: 264-625
Cow position:
Alignm length: 378
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 317

Conread position: 322-583
Cow position:
Alignm length: 284
Alignm identity: 206
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 18, 200

Conread position: 336-613
Cow position:
Alignm length: 292
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 127

Conread position: 341-571
Cow position:
Alignm length: 234
Alignm identity: 156
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 93, 74

Conread position: 350-605
Cow position:
Alignm length: 270
Alignm identity: 198
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 51, 214

Conread position: 353-611
Cow position:
Alignm length: 270
Alignm identity: 205
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 44, 217

Show alignments to all cow chromosomes.