Cow genome map
| Conread name: | rtra03_h21r1.y1 |
| Conread position: | 1-311 |
| Cow position: | chr27:6017290-6017586 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 6-596 |
| Cow position: | chr27:15634682-15634095 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 163 |
| Conread position: | 6-613 |
| Cow position: | chr27:25965306-25964696 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 8-624 |
| Cow position: | chr27:15405305-15405899 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 11-601 |
| Cow position: | chr27:14296871-14297459 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 158 |
| Conread position: | 11-620 |
| Cow position: | chr27:9255475-9254874 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 13-298 |
| Cow position: | chr27:8200464-8200740 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-331 |
| Cow position: | chr27:3991669-3991971 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 13-375 |
| Cow position: | chr27:15034435-15034080 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 13-427 |
| Cow position: | chr27:9332404-9332813 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-488 |
| Cow position: | chr27:30035470-30035952 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 13-498 |
| Cow position: | chr27:13900554-13901040 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 79 |
| Conread position: | 13-498 |
| Cow position: | chr27:22648249-22647760 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-543 |
| Cow position: | chr27:8960372-8959837 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-581 |
| Cow position: | chr27:865265-865852 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 385 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 13-585 |
| Cow position: | chr27:19524055-19523474 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-595 |
| Cow position: | chr27:20810071-20810667 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 156 |
| Conread position: | 13-596 |
| Cow position: | chr27:3232874-3232287 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-596 |
| Cow position: | chr27:4332068-4331493 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 13-596 |
| Cow position: | chr27:4982029-4982619 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-596 |
| Cow position: | chr27:5924917-5925520 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 212 |
| Conread position: | 13-596 |
| Cow position: | chr27:9990551-9989956 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-596 |
| Cow position: | chr27:12749690-12750272 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-596 |
| Cow position: | chr27:27291052-27291636 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 13-601 |
| Cow position: | chr27:10578585-10579199 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 217 |
| Conread position: | 13-601 |
| Cow position: | chr27:13352952-13353558 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 158 |
| Conread position: | 13-601 |
| Cow position: | chr27:15543672-15544267 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-601 |
| Cow position: | chr27:16031740-16031145 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-601 |
| Cow position: | chr27:29036713-29036128 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-604 |
| Cow position: | chr27:166264-165664 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 158 |
| Conread position: | 13-604 |
| Cow position: | chr27:8426516-8427113 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 164 |
| Conread position: | 13-604 |
| Cow position: | chr27:25801548-25800952 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 13-606 |
| Cow position: | chr27:27665659-27666262 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 13-613 |
| Cow position: | chr27:5991384-5990786 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 199 |
| Conread position: | 13-615 |
| Cow position: | chr27:26855720-26856321 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 13-623 |
| Cow position: | chr27:15273416-15272795 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 195 |
| Conread position: | 13-625 |
| Cow position: | chr27:21451100-21451718 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 71 |
| Conread position: | 14-499 |
| Cow position: | chr27:16788795-16788285 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 14-609 |
| Cow position: | chr27:16427339-16427923 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 16 |
| Conread position: | 14-609 |
| Cow position: | chr27:31267892-31268475 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 14-625 |
| Cow position: | chr27:1535842-1536444 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 198 |
| Conread position: | 16-615 |
| Cow position: | chr27:27729816-27729221 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 22-613 |
| Cow position: | chr27:17567767-17568364 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 40-469 |
| Cow position: | chr27:30571518-30571945 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 180 |
| Conread position: | 70-324 |
| Cow position: | chr27:24260979-24260729 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 22, 152 |
| Conread position: | 90-604 |
| Cow position: | chr27:1082427-1081907 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 102-596 |
| Cow position: | chr27:27044931-27045424 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 121-601 |
| Cow position: | chr27:2000610-2001097 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 135-551 |
| Cow position: | chr27:21342285-21342728 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 146-581 |
| Cow position: | chr27:17422384-17422814 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 64 |
| Conread position: | 154-613 |
| Cow position: | chr27:25971800-25971337 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 155-587 |
| Cow position: | chr27:27235305-27234868 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 55 |
| Conread position: | 172-469 |
| Cow position: | chr27:29447258-29446960 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 148, 38 |
| Conread position: | 172-612 |
| Cow position: | chr27:26784640-26785083 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 38 |
| Conread position: | 185-596 |
| Cow position: | chr27:26329764-26330179 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 25 |
| Conread position: | 215-604 |
| Cow position: | chr27:29811186-29811582 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 38 |
| Conread position: | 219-493 |
| Cow position: | chr27:7911842-7912120 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 219-612 |
| Cow position: | chr27:31249108-31249503 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 219-613 |
| Cow position: | chr27:27556667-27557066 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 38 |
| Conread position: | 252-598 |
| Cow position: | chr27:10282833-10283191 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 77, 176 |
| Conread position: | 254-455 |
| Cow position: | chr27:21684435-21684240 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 59 |
| Conread position: | 259-612 |
| Cow position: | chr27:21284335-21283972 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 233 |
| Conread position: | 260-601 |
| Cow position: | chr27:27849165-27849522 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 260-625 |
| Cow position: | chr27:21204307-21203930 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 75 |
| Conread position: | 264-614 |
| Cow position: | chr27:23318034-23317677 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 271-596 |
| Cow position: | chr27:2558085-2557742 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 281-576 |
| Cow position: | chr27:1845961-1845653 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 5, 198 |
| Conread position: | 321-625 |
| Cow position: | chr27:18473216-18473513 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 334-571 |
| Cow position: | chr27:3994334-3994089 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 157 |
| Conread position: | 349-625 |
| Cow position: | chr27:12281686-12281965 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 48, 194 |
Show alignments to all cow chromosomes.