Cow genome map

Conread name: rtra03_h21r1.y1

Conread position: 6-583
Cow position:
Alignm length: 596
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 6-625
Cow position:
Alignm length: 636
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 22

Conread position: 7-450
Cow position:
Alignm length: 457
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 9

Conread position: 9-402
Cow position:
Alignm length: 399
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 203

Conread position: 9-613
Cow position:
Alignm length: 638
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 164

Conread position: 11-469
Cow position:
Alignm length: 474
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 61

Conread position: 11-529
Cow position:
Alignm length: 533
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 202

Conread position: 11-587
Cow position:
Alignm length: 605
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 134

Conread position: 11-596
Cow position:
Alignm length: 604
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 165

Conread position: 11-613
Cow position:
Alignm length: 613
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 8

Conread position: 12-595
Cow position:
Alignm length: 604
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 157

Conread position: 13-322
Cow position:
Alignm length: 315
Alignm identity: 221
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 10, 158

Conread position: 13-331
Cow position:
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-410
Cow position:
Alignm length: 406
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 154

Conread position: 13-493
Cow position:
Alignm length: 494
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-513
Cow position:
Alignm length: 517
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-532
Cow position:
Alignm length: 536
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-568
Cow position:
Alignm length: 573
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-574
Cow position:
Alignm length: 577
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 183

Conread position: 13-575
Cow position:
Alignm length: 580
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-576
Cow position:
Alignm length: 583
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 28

Conread position: 13-578
Cow position:
Alignm length: 579
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 207

Conread position: 13-581
Cow position:
Alignm length: 590
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-585
Cow position:
Alignm length: 584
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-586
Cow position:
Alignm length: 591
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-587
Cow position:
Alignm length: 592
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 54

Conread position: 13-587
Cow position:
Alignm length: 591
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-587
Cow position:
Alignm length: 591
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-594
Cow position:
Alignm length: 599
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-595
Cow position:
Alignm length: 602
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 47

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 156

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 602
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-596
Cow position:
Alignm length: 602
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 155

Conread position: 13-596
Cow position:
Alignm length: 602
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 157

Conread position: 13-596
Cow position:
Alignm length: 601
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 113

Conread position: 13-596
Cow position:
Alignm length: 621
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 604
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 127

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 135

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 13-596
Cow position:
Alignm length: 602
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-596
Cow position:
Alignm length: 602
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-597
Cow position:
Alignm length: 603
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 608
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 36

Conread position: 13-601
Cow position:
Alignm length: 608
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 158

Conread position: 13-601
Cow position:
Alignm length: 607
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-601
Cow position:
Alignm length: 608
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 613
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 19

Conread position: 13-601
Cow position:
Alignm length: 607
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-603
Cow position:
Alignm length: 610
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 156

Conread position: 13-603
Cow position:
Alignm length: 610
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-603
Cow position:
Alignm length: 613
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position:
Alignm length: 621
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 119

Conread position: 13-604
Cow position:
Alignm length: 606
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 51

Conread position: 13-604
Cow position:
Alignm length: 611
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 15

Conread position: 13-612
Cow position:
Alignm length: 638
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 126

Conread position: 13-613
Cow position:
Alignm length: 617
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 22

Conread position: 13-624
Cow position:
Alignm length: 628
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 32

Conread position: 13-625
Cow position:
Alignm length: 633
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 16

Conread position: 14-303
Cow position:
Alignm length: 293
Alignm identity: 211
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 27, 155

Conread position: 14-329
Cow position:
Alignm length: 317
Alignm identity: 210
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 80

Conread position: 14-542
Cow position:
Alignm length: 545
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 16

Conread position: 14-569
Cow position:
Alignm length: 575
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 142

Conread position: 14-587
Cow position:
Alignm length: 589
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 14-604
Cow position:
Alignm length: 611
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 14-612
Cow position:
Alignm length: 618
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 116

Conread position: 14-612
Cow position:
Alignm length: 625
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 54

Conread position: 14-612
Cow position:
Alignm length: 615
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 69

Conread position: 14-612
Cow position:
Alignm length: 631
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 156

Conread position: 14-613
Cow position:
Alignm length: 614
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 63

Conread position: 14-613
Cow position:
Alignm length: 616
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 105

Conread position: 14-625
Cow position:
Alignm length: 630
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 39

Conread position: 14-625
Cow position:
Alignm length: 623
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 198

Conread position: 15-372
Cow position:
Alignm length: 363
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 154

Conread position: 15-453
Cow position:
Alignm length: 455
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 154

Conread position: 15-604
Cow position:
Alignm length: 607
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 80

Conread position: 15-625
Cow position:
Alignm length: 641
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 183

Conread position: 16-484
Cow position:
Alignm length: 483
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 18

Conread position: 16-558
Cow position:
Alignm length: 554
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 51

Conread position: 16-576
Cow position:
Alignm length: 577
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 64

Conread position: 17-625
Cow position:
Alignm length: 628
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 153

Conread position: 19-365
Cow position:
Alignm length: 354
Alignm identity: 235
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 23, 116

Conread position: 20-555
Cow position:
Alignm length: 555
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 149

Conread position: 22-572
Cow position:
Alignm length: 568
Alignm identity: 364
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 24, 152

Conread position: 25-560
Cow position:
Alignm length: 556
Alignm identity: 350
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 62, 78

Conread position: 25-575
Cow position:
Alignm length: 575
Alignm identity: 380
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 16, 39

Conread position: 26-391
Cow position:
Alignm length: 374
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 187

Conread position: 26-587
Cow position:
Alignm length: 582
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 234

Conread position: 30-587
Cow position:
Alignm length: 574
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 20

Conread position: 34-596
Cow position:
Alignm length: 582
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 8

Conread position: 34-601
Cow position:
Alignm length: 586
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 8

Conread position: 45-596
Cow position:
Alignm length: 570
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 128

Conread position: 49-613
Cow position:
Alignm length: 581
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 166

Conread position: 51-594
Cow position:
Alignm length: 561
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 117

Conread position: 53-324
Cow position:
Alignm length: 273
Alignm identity: 201
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 45, 115

Conread position: 58-625
Cow position:
Alignm length: 583
Alignm identity: 371
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 46, 8

Conread position: 64-625
Cow position:
Alignm length: 575
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 29

Conread position: 90-308
Cow position:
Alignm length: 224
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 57, 125

Conread position: 90-612
Cow position:
Alignm length: 543
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 27

Conread position: 96-512
Cow position:
Alignm length: 426
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 71

Conread position: 103-573
Cow position:
Alignm length: 485
Alignm identity: 324
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 25, 91

Conread position: 103-613
Cow position:
Alignm length: 523
Alignm identity: 336
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 232, 107

Conread position: 103-625
Cow position:
Alignm length: 541
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 115

Conread position: 104-570
Cow position:
Alignm length: 482
Alignm identity: 315
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 250, 106

Conread position: 108-612
Cow position:
Alignm length: 546
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 51

Conread position: 112-613
Cow position:
Alignm length: 513
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 25

Conread position: 121-567
Cow position:
Alignm length: 466
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 65

Conread position: 125-612
Cow position:
Alignm length: 509
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 46

Conread position: 131-540
Cow position:
Alignm length: 417
Alignm identity: 264
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 203, 66

Conread position: 139-596
Cow position:
Alignm length: 476
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 29

Conread position: 141-612
Cow position:
Alignm length: 488
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 69

Conread position: 141-613
Cow position:
Alignm length: 491
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 73

Conread position: 172-448
Cow position:
Alignm length: 289
Alignm identity: 202
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 161, 42

Conread position: 173-601
Cow position:
Alignm length: 445
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 37

Conread position: 175-603
Cow position:
Alignm length: 443
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 35

Conread position: 179-581
Cow position:
Alignm length: 410
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 74

Conread position: 183-541
Cow position:
Alignm length: 366
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 27

Conread position: 183-596
Cow position:
Alignm length: 430
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 27

Conread position: 219-454
Cow position:
Alignm length: 248
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 107, 27

Conread position: 219-522
Cow position:
Alignm length: 315
Alignm identity: 226
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 133, 34

Conread position: 219-541
Cow position:
Alignm length: 333
Alignm identity: 233
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 108, 21

Conread position: 219-598
Cow position:
Alignm length: 396
Alignm identity: 263
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 114, 36

Conread position: 219-601
Cow position:
Alignm length: 398
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 219-612
Cow position:
Alignm length: 413
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 37

Conread position: 219-612
Cow position:
Alignm length: 418
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 36

Conread position: 219-625
Cow position:
Alignm length: 423
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 24

Conread position: 219-625
Cow position:
Alignm length: 423
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 14

Conread position: 220-468
Cow position:
Alignm length: 259
Alignm identity: 184
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 150, 13

Conread position: 220-587
Cow position:
Alignm length: 381
Alignm identity: 259
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 104, 33

Conread position: 227-614
Cow position:
Alignm length: 411
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 151

Conread position: 242-576
Cow position:
Alignm length: 350
Alignm identity: 250
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 91, 14

Conread position: 252-478
Cow position:
Alignm length: 236
Alignm identity: 170
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 74, 0

Conread position: 254-617
Cow position:
Alignm length: 376
Alignm identity: 248
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 87, 20

Conread position: 259-625
Cow position:
Alignm length: 384
Alignm identity: 248
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 76, 207

Conread position: 262-613
Cow position:
Alignm length: 364
Alignm identity: 254
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 70, 177

Conread position: 274-611
Cow position:
Alignm length: 354
Alignm identity: 249
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 51, 197

Conread position: 275-515
Cow position:
Alignm length: 261
Alignm identity: 189
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 51, 102

Conread position: 281-587
Cow position:
Alignm length: 318
Alignm identity: 224
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 69, 86

Conread position: 321-575
Cow position:
Alignm length: 266
Alignm identity: 180
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 130

Conread position: 327-569
Cow position:
Alignm length: 248
Alignm identity: 169
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 74

Conread position: 327-576
Cow position:
Alignm length: 268
Alignm identity: 186
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 73, 20

Conread position: 334-559
Cow position:
Alignm length: 241
Alignm identity: 180
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 21, 224

Conread position: 334-625
Cow position:
Alignm length: 308
Alignm identity: 222
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 20, 157

Conread position: 354-625
Cow position:
Alignm length: 291
Alignm identity: 210
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 43, 178

Show alignments to all cow chromosomes.