Cow genome map

Conread name: rtra03_h21r1.y1

Conread position: 6-327
Cow position:
Alignm length: 326
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 6-600
Cow position:
Alignm length: 609
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 164

Conread position: 9-351
Cow position:
Alignm length: 348
Alignm identity: 243
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 32, 13

Conread position: 11-454
Cow position:
Alignm length: 457
Alignm identity: 297
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 72

Conread position: 11-584
Cow position:
Alignm length: 606
Alignm identity: 397
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 30, 8

Conread position: 11-596
Cow position:
Alignm length: 605
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 159

Conread position: 11-596
Cow position:
Alignm length: 604
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 158

Conread position: 11-613
Cow position:
Alignm length: 624
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 6

Conread position: 11-623
Cow position:
Alignm length: 638
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 187

Conread position: 13-312
Cow position:
Alignm length: 303
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-324
Cow position:
Alignm length: 313
Alignm identity: 222
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 159, 28

Conread position: 13-331
Cow position:
Alignm length: 322
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-351
Cow position:
Alignm length: 344
Alignm identity: 240
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 23, 156

Conread position: 13-372
Cow position:
Alignm length: 367
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 88

Conread position: 13-378
Cow position:
Alignm length: 373
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-407
Cow position:
Alignm length: 401
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 28

Conread position: 13-409
Cow position:
Alignm length: 408
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 189

Conread position: 13-435
Cow position:
Alignm length: 430
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-455
Cow position:
Alignm length: 458
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-485
Cow position:
Alignm length: 488
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-507
Cow position:
Alignm length: 511
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-571
Cow position:
Alignm length: 578
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-585
Cow position:
Alignm length: 592
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 158

Conread position: 13-585
Cow position:
Alignm length: 588
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 19

Conread position: 13-585
Cow position:
Alignm length: 591
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 148

Conread position: 13-585
Cow position:
Alignm length: 602
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-587
Cow position:
Alignm length: 592
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 156

Conread position: 13-587
Cow position:
Alignm length: 592
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-591
Cow position:
Alignm length: 594
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 13-596
Cow position:
Alignm length: 601
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 602
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 605
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 63

Conread position: 13-596
Cow position:
Alignm length: 604
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 598
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 76

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 605
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position:
Alignm length: 602
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 112

Conread position: 13-596
Cow position:
Alignm length: 603
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 605
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 58

Conread position: 13-601
Cow position:
Alignm length: 607
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 611
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 79

Conread position: 13-601
Cow position:
Alignm length: 608
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 155

Conread position: 13-601
Cow position:
Alignm length: 608
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 607
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 609
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 611
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 609
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 157

Conread position: 13-601
Cow position:
Alignm length: 597
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position:
Alignm length: 608
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-603
Cow position:
Alignm length: 610
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 116

Conread position: 13-604
Cow position:
Alignm length: 611
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 13-604
Cow position:
Alignm length: 610
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 13-605
Cow position:
Alignm length: 612
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-610
Cow position:
Alignm length: 620
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 95

Conread position: 13-610
Cow position:
Alignm length: 625
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 205

Conread position: 13-612
Cow position:
Alignm length: 621
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 143

Conread position: 13-613
Cow position:
Alignm length: 611
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-625
Cow position:
Alignm length: 623
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 55

Conread position: 13-625
Cow position:
Alignm length: 632
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 14-308
Cow position:
Alignm length: 298
Alignm identity: 214
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 27, 207

Conread position: 14-312
Cow position:
Alignm length: 302
Alignm identity: 215
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 27, 13

Conread position: 14-385
Cow position:
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 101

Conread position: 14-461
Cow position:
Alignm length: 459
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 20

Conread position: 14-510
Cow position:
Alignm length: 521
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 138

Conread position: 14-596
Cow position:
Alignm length: 599
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 160

Conread position: 14-596
Cow position:
Alignm length: 615
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 209

Conread position: 14-601
Cow position:
Alignm length: 606
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 198

Conread position: 14-604
Cow position:
Alignm length: 611
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 27

Conread position: 14-610
Cow position:
Alignm length: 619
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 16

Conread position: 14-615
Cow position:
Alignm length: 622
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 160

Conread position: 14-624
Cow position:
Alignm length: 627
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 167

Conread position: 14-625
Cow position:
Alignm length: 626
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 155

Conread position: 14-625
Cow position:
Alignm length: 642
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 205

Conread position: 15-477
Cow position:
Alignm length: 479
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 59

Conread position: 15-596
Cow position:
Alignm length: 601
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 154

Conread position: 16-406
Cow position:
Alignm length: 400
Alignm identity: 268
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 25, 14

Conread position: 16-488
Cow position:
Alignm length: 490
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 203

Conread position: 16-539
Cow position:
Alignm length: 537
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 33

Conread position: 16-613
Cow position:
Alignm length: 612
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 53

Conread position: 19-594
Cow position:
Alignm length: 595
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 148

Conread position: 22-596
Cow position:
Alignm length: 591
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 148

Conread position: 22-612
Cow position:
Alignm length: 620
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 160

Conread position: 22-613
Cow position:
Alignm length: 614
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 27

Conread position: 24-585
Cow position:
Alignm length: 581
Alignm identity: 376
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 21, 40

Conread position: 25-596
Cow position:
Alignm length: 590
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 122

Conread position: 25-624
Cow position:
Alignm length: 619
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 188

Conread position: 48-581
Cow position:
Alignm length: 543
Alignm identity: 358
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 38, 34

Conread position: 48-604
Cow position:
Alignm length: 575
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 120

Conread position: 51-410
Cow position:
Alignm length: 366
Alignm identity: 252
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 46, 13

Conread position: 57-596
Cow position:
Alignm length: 559
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 110

Conread position: 63-596
Cow position:
Alignm length: 551
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 105

Conread position: 67-613
Cow position:
Alignm length: 563
Alignm identity: 344
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 65

Conread position: 70-454
Cow position:
Alignm length: 393
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 118

Conread position: 75-601
Cow position:
Alignm length: 545
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 93

Conread position: 84-596
Cow position:
Alignm length: 528
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 84

Conread position: 89-410
Cow position:
Alignm length: 329
Alignm identity: 224
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 8, 64

Conread position: 89-587
Cow position:
Alignm length: 514
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 78

Conread position: 90-587
Cow position:
Alignm length: 509
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 120

Conread position: 100-409
Cow position:
Alignm length: 314
Alignm identity: 225
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 182, 110

Conread position: 104-601
Cow position:
Alignm length: 515
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 63

Conread position: 104-612
Cow position:
Alignm length: 534
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 110

Conread position: 112-424
Cow position:
Alignm length: 321
Alignm identity: 230
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 214, 98

Conread position: 113-601
Cow position:
Alignm length: 519
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 54

Conread position: 116-601
Cow position:
Alignm length: 503
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 51

Conread position: 117-453
Cow position:
Alignm length: 349
Alignm identity: 243
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 46, 51

Conread position: 127-595
Cow position:
Alignm length: 488
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 8

Conread position: 128-575
Cow position:
Alignm length: 461
Alignm identity: 305
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 206, 28

Conread position: 139-601
Cow position:
Alignm length: 480
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 140-601
Cow position:
Alignm length: 480
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 27

Conread position: 147-589
Cow position:
Alignm length: 467
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 64

Conread position: 152-489
Cow position:
Alignm length: 355
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 41

Conread position: 158-601
Cow position:
Alignm length: 461
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 9

Conread position: 161-387
Cow position:
Alignm length: 232
Alignm identity: 162
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 143, 11

Conread position: 170-613
Cow position:
Alignm length: 457
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 40

Conread position: 172-601
Cow position:
Alignm length: 446
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 38

Conread position: 216-397
Cow position:
Alignm length: 186
Alignm identity: 131
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 104, 37

Conread position: 219-468
Cow position:
Alignm length: 262
Alignm identity: 181
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 114, 24

Conread position: 219-534
Cow position:
Alignm length: 327
Alignm identity: 233
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 131, 27

Conread position: 219-587
Cow position:
Alignm length: 387
Alignm identity: 270
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 109, 37

Conread position: 219-611
Cow position:
Alignm length: 403
Alignm identity: 277
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 86, 34

Conread position: 220-581
Cow position:
Alignm length: 371
Alignm identity: 241
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 130, 27

Conread position: 221-534
Cow position:
Alignm length: 335
Alignm identity: 237
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 96, 35

Conread position: 222-625
Cow position:
Alignm length: 419
Alignm identity: 285
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 150, 26

Conread position: 223-601
Cow position:
Alignm length: 394
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 30

Conread position: 242-612
Cow position:
Alignm length: 398
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 28

Conread position: 252-613
Cow position:
Alignm length: 373
Alignm identity: 245
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 81, 18

Conread position: 253-559
Cow position:
Alignm length: 318
Alignm identity: 225
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 61, 249

Conread position: 253-613
Cow position:
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 260-576
Cow position:
Alignm length: 329
Alignm identity: 223
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 66, 39

Conread position: 281-576
Cow position:
Alignm length: 314
Alignm identity: 213
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 68, 89

Conread position: 282-575
Cow position:
Alignm length: 299
Alignm identity: 195
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 69

Conread position: 301-611
Cow position:
Alignm length: 328
Alignm identity: 235
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 26, 212

Conread position: 334-554
Cow position:
Alignm length: 234
Alignm identity: 167
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 15, 156

Conread position: 335-613
Cow position:
Alignm length: 294
Alignm identity: 215
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 18, 0

Conread position: 349-613
Cow position:
Alignm length: 271
Alignm identity: 182
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 178

Show alignments to all cow chromosomes.