Cow genome map

Conread name: rtra03_h21r1.y1

Conread position: 1-479
Cow position: chr3:15987562-15988044 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 216

Conread position: 1-558
Cow position: chr3:76933299-76932760 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 374
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 5, 11

Conread position: 2-625
Cow position: chr3:56102321-56102945 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 207

Conread position: 4-382
Cow position: chr3:12666820-12667190 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 166

Conread position: 4-499
Cow position: chr3:74852714-74852219 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 9

Conread position: 4-585
Cow position: chr3:38869153-38869732 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 165

Conread position: 4-625
Cow position: chr3:21303956-21303359 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 12

Conread position: 4-625
Cow position: chr3:39556004-39555381 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 14

Conread position: 6-331
Cow position: chr3:14862786-14863101 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 117

Conread position: 6-527
Cow position: chr3:79592723-79593250 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 209

Conread position: 6-596
Cow position: chr3:20380136-20379539 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 6-596
Cow position: chr3:31121563-31120959 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 207

Conread position: 6-596
Cow position: chr3:57482144-57481559 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 159

Conread position: 6-601
Cow position: chr3:47079033-47078430 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 7-566
Cow position: chr3:17938417-17937857 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 9

Conread position: 7-587
Cow position: chr3:66651735-66651173 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 10

Conread position: 9-539
Cow position: chr3:62881950-62882479 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 7

Conread position: 9-570
Cow position: chr3:76156172-76156731 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 359
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 89, 45

Conread position: 9-601
Cow position: chr3:68718122-68717527 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 130

Conread position: 9-604
Cow position: chr3:3653697-3653101 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 10-303
Cow position: chr3:5421304-5421010 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 210
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 58

Conread position: 11-310
Cow position: chr3:64134941-64135241 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 213
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 30, 6

Conread position: 11-361
Cow position: chr3:7327023-7327367 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 8

Conread position: 11-474
Cow position: chr3:69434432-69433966 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 202

Conread position: 11-575
Cow position: chr3:26533401-26532852 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 11-584
Cow position: chr3:6875683-6875117 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 11-613
Cow position: chr3:38251452-38252037 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 6

Conread position: 12-550
Cow position: chr3:29643947-29644494 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 53

Conread position: 13-215
Cow position: chr3:64735910-64735709 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 28, 17

Conread position: 13-312
Cow position: chr3:9433860-9434144 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 226
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 163, 20

Conread position: 13-324
Cow position: chr3:48525330-48525631 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 43

Conread position: 13-342
Cow position: chr3:50204133-50204456 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-364
Cow position: chr3:4162375-4162018 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 167

Conread position: 13-368
Cow position: chr3:35619174-35619523 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-378
Cow position: chr3:6441251-6441611 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 199

Conread position: 13-410
Cow position: chr3:59864143-59864535 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 13-454
Cow position: chr3:20889054-20888625 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 314
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 29, 8

Conread position: 13-464
Cow position: chr3:5886085-5886541 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 158

Conread position: 13-481
Cow position: chr3:41082751-41083222 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-491
Cow position: chr3:34014930-34015411 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 13-498
Cow position: chr3:12664521-12665010 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-527
Cow position: chr3:32413101-32412583 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-527
Cow position: chr3:69421870-69421363 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 60

Conread position: 13-527
Cow position: chr3:72389554-72390062 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 162

Conread position: 13-543
Cow position: chr3:41208008-41207474 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 144

Conread position: 13-560
Cow position: chr3:49542613-49542061 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-570
Cow position: chr3:11182359-11181809 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 67

Conread position: 13-582
Cow position: chr3:5497848-5497278 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 156

Conread position: 13-583
Cow position: chr3:26595631-26596203 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 19

Conread position: 13-586
Cow position: chr3:75165485-75164902 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 29

Conread position: 13-587
Cow position: chr3:50920624-50921206 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 7

Conread position: 13-587
Cow position: chr3:68697379-68696798 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-595
Cow position: chr3:49998726-49999313 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-595
Cow position: chr3:69931245-69930659 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 43

Conread position: 13-596
Cow position: chr3:2708282-2707696 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-596
Cow position: chr3:6864255-6864836 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr3:7477334-7476742 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-596
Cow position: chr3:10243249-10243837 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr3:18814095-18814684 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 155

Conread position: 13-596
Cow position: chr3:19883064-19883646 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 107

Conread position: 13-596
Cow position: chr3:23205084-23204500 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 155

Conread position: 13-596
Cow position: chr3:23287747-23287159 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr3:24443506-24442925 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr3:24573571-24572989 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 157

Conread position: 13-596
Cow position: chr3:29574532-29573948 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 117

Conread position: 13-596
Cow position: chr3:43190682-43190092 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr3:45977091-45977677 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 154

Conread position: 13-596
Cow position: chr3:46505356-46505946 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr3:49908424-49907855 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 177

Conread position: 13-596
Cow position: chr3:56296972-56297562 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 156

Conread position: 13-596
Cow position: chr3:56337364-56336781 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 29

Conread position: 13-596
Cow position: chr3:56645743-56645153 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-596
Cow position: chr3:66622803-66623389 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 83

Conread position: 13-596
Cow position: chr3:72632658-72633251 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chr3:75039257-75038664 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 159

Conread position: 13-596
Cow position: chr3:78024844-78024258 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 158

Conread position: 13-596
Cow position: chr3:83766841-83767423 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr3:16225469-16226058 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr3:18862031-18862623 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 51

Conread position: 13-601
Cow position: chr3:19798564-19797969 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr3:22338496-22339091 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr3:24264790-24265381 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 94

Conread position: 13-601
Cow position: chr3:26743283-26742690 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr3:31021271-31021865 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr3:32620453-32619863 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 94

Conread position: 13-601
Cow position: chr3:40048477-40049072 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr3:40337555-40336963 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 162

Conread position: 13-601
Cow position: chr3:46858696-46858101 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 13-601
Cow position: chr3:48845594-48846188 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr3:49611620-49611025 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 156

Conread position: 13-601
Cow position: chr3:53880679-53880084 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr3:56485672-56485077 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chr3:68871162-68870567 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-603
Cow position: chr3:65177598-65178194 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-604
Cow position: chr3:227277-226700 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 70

Conread position: 13-604
Cow position: chr3:7246515-7245920 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 128

Conread position: 13-604
Cow position: chr3:29129679-29130280 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 93

Conread position: 13-604
Cow position: chr3:30616349-30615755 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chr3:40285728-40285130 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chr3:64653255-64653854 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chr3:66888608-66888012 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chr3:68889983-68889386 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-610
Cow position: chr3:74848560-74847979 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 142

Conread position: 13-611
Cow position: chr3:27246099-27245498 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-612
Cow position: chr3:21004402-21005007 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-612
Cow position: chr3:45185377-45184791 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 124

Conread position: 13-613
Cow position: chr3:12253638-12254239 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 51

Conread position: 13-613
Cow position: chr3:77426313-77426882 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 61

Conread position: 13-624
Cow position: chr3:82931223-82931828 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 162

Conread position: 13-625
Cow position: chr3:24637999-24638622 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 128

Conread position: 13-625
Cow position: chr3:25689241-25689859 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 201

Conread position: 13-625
Cow position: chr3:63000773-63000168 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 202

Conread position: 14-303
Cow position: chr3:19718946-19718673 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 32, 144

Conread position: 14-312
Cow position: chr3:8243171-8243459 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 27, 198

Conread position: 14-312
Cow position: chr3:63689655-63689369 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 27

Conread position: 14-373
Cow position: chr3:36517052-36516699 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 254
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 27, 128

Conread position: 14-506
Cow position: chr3:32326834-32326343 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 203

Conread position: 14-572
Cow position: chr3:21026818-21026256 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 141

Conread position: 14-585
Cow position: chr3:81100675-81101243 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 14-587
Cow position: chr3:19108155-19108724 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 198

Conread position: 14-587
Cow position: chr3:74850545-74849980 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 88

Conread position: 14-594
Cow position: chr3:31770729-31771306 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 50

Conread position: 14-605
Cow position: chr3:57742116-57742698 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 119

Conread position: 14-613
Cow position: chr3:31418121-31418729 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 202

Conread position: 14-613
Cow position: chr3:63239424-63238835 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 198

Conread position: 14-625
Cow position: chr3:6896435-6897033 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 50

Conread position: 14-625
Cow position: chr3:18759829-18759215 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 200

Conread position: 14-625
Cow position: chr3:24263243-24262629 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 198

Conread position: 14-625
Cow position: chr3:48361538-48362143 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 28

Conread position: 14-625
Cow position: chr3:49335790-49336401 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 198

Conread position: 14-625
Cow position: chr3:63149049-63148436 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 69

Conread position: 14-625
Cow position: chr3:80930658-80930048 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 82

Conread position: 15-587
Cow position: chr3:1033452-1034029 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 154

Conread position: 15-601
Cow position: chr3:13724122-13723529 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 180

Conread position: 16-445
Cow position: chr3:80478493-80478065 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 303
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 70, 26

Conread position: 16-576
Cow position: chr3:42994292-42993721 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 65

Conread position: 16-613
Cow position: chr3:3790207-3790819 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 119

Conread position: 17-625
Cow position: chr3:15656695-15656106 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 195

Conread position: 17-625
Cow position: chr3:46015080-46014477 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 176

Conread position: 18-491
Cow position: chr3:19795611-19795153 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 6

Conread position: 18-596
Cow position: chr3:13276684-13276104 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 151

Conread position: 19-469
Cow position: chr3:34347486-34347033 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 150

Conread position: 19-497
Cow position: chr3:36594420-36594900 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 150

Conread position: 19-517
Cow position: chr3:9404633-9404138 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 114

Conread position: 19-601
Cow position: chr3:74060068-74060652 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 35

Conread position: 20-613
Cow position: chr3:50460944-50461515 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 203

Conread position: 22-535
Cow position: chr3:58128670-58129164 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 19

Conread position: 22-596
Cow position: chr3:76001358-76000785 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 147

Conread position: 22-613
Cow position: chr3:11510246-11509654 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 152

Conread position: 22-624
Cow position: chr3:52689362-52689955 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 77

Conread position: 23-604
Cow position: chr3:19941495-19942078 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 9

Conread position: 23-612
Cow position: chr3:4030345-4030937 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 224

Conread position: 24-433
Cow position: chr3:2868161-2867757 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 145

Conread position: 24-516
Cow position: chr3:23009971-23010467 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 145

Conread position: 25-601
Cow position: chr3:34504523-34503940 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 144

Conread position: 26-315
Cow position: chr3:81979930-81979651 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 15, 183

Conread position: 26-595
Cow position: chr3:77581216-77581774 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 112

Conread position: 26-596
Cow position: chr3:16294306-16293733 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 15

Conread position: 26-624
Cow position: chr3:45692417-45691837 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 85

Conread position: 31-569
Cow position: chr3:23170586-23170048 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 36

Conread position: 33-611
Cow position: chr3:3060465-3061046 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 184

Conread position: 35-605
Cow position: chr3:36171315-36170752 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 27

Conread position: 40-613
Cow position: chr3:49463936-49463365 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 126

Conread position: 42-555
Cow position: chr3:20781792-20781300 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 354
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 55, 88

Conread position: 46-362
Cow position: chr3:34028316-34028009 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 9

Conread position: 47-343
Cow position: chr3:13477956-13478240 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 43, 53

Conread position: 48-528
Cow position: chr3:11414445-11414899 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 322
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 49, 117

Conread position: 48-613
Cow position: chr3:24586608-24586036 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 174

Conread position: 51-578
Cow position: chr3:83290309-83289795 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 81

Conread position: 51-598
Cow position: chr3:16884658-16884124 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 352
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 37, 91

Conread position: 53-625
Cow position: chr3:14467248-14466656 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 97

Conread position: 58-342
Cow position: chr3:39855865-39856140 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 37

Conread position: 58-604
Cow position: chr3:31396032-31396559 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 153

Conread position: 67-622
Cow position: chr3:56719683-56719122 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 147

Conread position: 69-390
Cow position: chr3:35972739-35973063 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 22, 147

Conread position: 72-613
Cow position: chr3:70097295-70096745 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 373
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 38, 28

Conread position: 83-568
Cow position: chr3:72602867-72603362 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 124

Conread position: 84-594
Cow position: chr3:19754068-19753559 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 84

Conread position: 88-625
Cow position: chr3:27866324-27866868 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 122

Conread position: 90-459
Cow position: chr3:18461472-18461099 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 78

Conread position: 90-542
Cow position: chr3:70323363-70322916 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 72

Conread position: 92-460
Cow position: chr3:28639150-28639519 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 263
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 88, 54

Conread position: 94-544
Cow position: chr3:56100947-56101386 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 42

Conread position: 100-515
Cow position: chr3:10370680-10371088 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 286
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 51, 64

Conread position: 103-494
Cow position: chr3:53518516-53518908 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 64

Conread position: 105-572
Cow position: chr3:77706508-77706979 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 62

Conread position: 113-596
Cow position: chr3:36875377-36874883 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 54

Conread position: 114-604
Cow position: chr3:56147979-56148478 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 98

Conread position: 114-616
Cow position: chr3:522812-523299 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 56

Conread position: 116-410
Cow position: chr3:62794580-62794291 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 213
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 201, 94

Conread position: 117-587
Cow position: chr3:2866961-2866488 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 50

Conread position: 120-520
Cow position: chr3:45864200-45863790 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 295
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 175, 90

Conread position: 121-573
Cow position: chr3:41314776-41315230 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 89

Conread position: 127-527
Cow position: chr3:45567914-45568316 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 84

Conread position: 127-586
Cow position: chr3:38095603-38096065 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 84

Conread position: 142-611
Cow position: chr3:31934615-31934146 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 69

Conread position: 143-612
Cow position: chr3:54568749-54569221 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 74

Conread position: 146-604
Cow position: chr3:63277130-63276678 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 22

Conread position: 148-581
Cow position: chr3:55108860-55108436 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 293
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 202, 57

Conread position: 148-601
Cow position: chr3:21593009-21593467 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 19

Conread position: 150-604
Cow position: chr3:61173224-61173680 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 60

Conread position: 155-601
Cow position: chr3:7156086-7155624 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 0

Conread position: 167-548
Cow position: chr3:49253257-49253639 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 275
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 161, 42

Conread position: 167-604
Cow position: chr3:54654437-54653989 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 47

Conread position: 167-613
Cow position: chr3:58034901-58034442 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 43

Conread position: 172-410
Cow position: chr3:55245088-55245320 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 148, 38

Conread position: 175-625
Cow position: chr3:53413788-53414222 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 308
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 134, 35

Conread position: 200-581
Cow position: chr3:43416991-43417375 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 254
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 52, 142

Conread position: 216-587
Cow position: chr3:3552111-3552489 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 37

Conread position: 219-475
Cow position: chr3:23941645-23941385 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 114, 29

Conread position: 219-576
Cow position: chr3:77084769-77084404 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 262
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 78, 29

Conread position: 219-596
Cow position: chr3:64376918-64376533 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 18

Conread position: 219-601
Cow position: chr3:5474331-5474722 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 16

Conread position: 219-601
Cow position: chr3:37893623-37894014 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 219-604
Cow position: chr3:2366100-2365716 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 34

Conread position: 219-604
Cow position: chr3:3837795-3837409 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 34

Conread position: 219-604
Cow position: chr3:5446122-5445731 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 34

Conread position: 219-604
Cow position: chr3:42977794-42977406 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 219-612
Cow position: chr3:7856214-7856617 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 25

Conread position: 219-613
Cow position: chr3:37627685-37628084 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 29

Conread position: 219-613
Cow position: chr3:54087581-54087171 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 24

Conread position: 219-623
Cow position: chr3:60178301-60177894 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 290
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 137, 17

Conread position: 219-625
Cow position: chr3:27783510-27783104 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 34

Conread position: 220-596
Cow position: chr3:5951825-5951438 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 33

Conread position: 220-601
Cow position: chr3:68510545-68510153 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 33

Conread position: 226-625
Cow position: chr3:18886262-18886663 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 30

Conread position: 227-587
Cow position: chr3:69442754-69442407 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 248
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 175, 19

Conread position: 252-556
Cow position: chr3:48096267-48095948 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 220
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 78, 203

Conread position: 253-579
Cow position: chr3:54787916-54788236 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 232
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 98, 53

Conread position: 253-587
Cow position: chr3:28093955-28094303 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 253-596
Cow position: chr3:46224714-46225072 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 253-596
Cow position: chr3:66830119-66829761 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 30

Conread position: 253-601
Cow position: chr3:2834720-2834356 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 322

Conread position: 253-601
Cow position: chr3:14679906-14680270 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 253-601
Cow position: chr3:20795112-20795476 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 253-601
Cow position: chr3:35342469-35342833 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 253-612
Cow position: chr3:2790570-2790947 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 253-625
Cow position: chr3:76187351-76187744 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 223

Conread position: 254-554
Cow position: chr3:43317418-43317103 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 212
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 63, 204

Conread position: 254-570
Cow position: chr3:22084604-22084279 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 100, 48

Conread position: 254-576
Cow position: chr3:58026183-58025855 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 95, 59

Conread position: 254-578
Cow position: chr3:27515112-27515432 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 211
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 16, 24

Conread position: 254-613
Cow position: chr3:14284554-14284931 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 256-563
Cow position: chr3:10931694-10932011 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 222
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 16, 22

Conread position: 256-572
Cow position: chr3:8098174-8098502 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 76, 0

Conread position: 259-601
Cow position: chr3:28435874-28435516 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 133

Conread position: 259-625
Cow position: chr3:55373915-55374287 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 133

Conread position: 260-625
Cow position: chr3:20603026-20602650 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 86, 70

Conread position: 262-518
Cow position: chr3:50941401-50941670 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 58, 0

Conread position: 262-601
Cow position: chr3:823263-822907 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 263-543
Cow position: chr3:77272967-77272673 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 263-601
Cow position: chr3:2572356-2572710 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 263-604
Cow position: chr3:64875615-64875959 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 248
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 54, 110

Conread position: 264-490
Cow position: chr3:64025489-64025249 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 56, 0

Conread position: 264-571
Cow position: chr3:12798221-12797900 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 265-596
Cow position: chr3:47273049-47272701 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 268-595
Cow position: chr3:43084076-43084420 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 279-523
Cow position: chr3:26751341-26751084 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 54, 0

Conread position: 280-595
Cow position: chr3:33269084-33269408 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 136

Conread position: 280-625
Cow position: chr3:77225581-77225939 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 251
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 50, 165

Conread position: 281-522
Cow position: chr3:75840140-75839888 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 284-534
Cow position: chr3:4081193-4080934 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 175
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 42, 31

Conread position: 297-610
Cow position: chr3:45311656-45311984 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 13

Conread position: 334-587
Cow position: chr3:35508753-35509019 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 21, 158

Conread position: 334-590
Cow position: chr3:8564159-8563891 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 16, 143

Conread position: 340-613
Cow position: chr3:70914356-70914068 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Show alignments to all cow chromosomes.