Cow genome map

Conread name: rtra03_h21r1.y1

Conread position: 1-534
Cow position: chrX:11074689-11074167 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 16

Conread position: 1-587
Cow position: chrX:20651882-20652464 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 12

Conread position: 4-503
Cow position: chrX:25016715-25016222 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 338
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 37, 60

Conread position: 4-601
Cow position: chrX:35532317-35532919 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 67

Conread position: 4-602
Cow position: chrX:24483899-24483299 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 15

Conread position: 5-378
Cow position: chrX:26433842-26434208 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 93

Conread position: 6-518
Cow position: chrX:37761173-37761685 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 12

Conread position: 6-576
Cow position: chrX:18289621-18289050 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 379
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 40, 58

Conread position: 6-595
Cow position: chrX:5247856-5248448 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 6-596
Cow position: chrX:21389044-21389637 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 26

Conread position: 6-601
Cow position: chrX:2578884-2579483 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 162

Conread position: 6-604
Cow position: chrX:39697231-39697834 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 8-625
Cow position: chrX:31727941-31728555 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 188

Conread position: 9-595
Cow position: chrX:6580400-6580993 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 203

Conread position: 9-601
Cow position: chrX:5321246-5320652 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 160

Conread position: 11-311
Cow position: chrX:19212827-19212539 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 203
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 35, 209

Conread position: 11-350
Cow position: chrX:35027775-35028101 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 30, 40

Conread position: 11-470
Cow position: chrX:9260823-9261279 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 6

Conread position: 11-615
Cow position: chrX:17891011-17891624 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 8

Conread position: 11-625
Cow position: chrX:30090567-30089954 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 203

Conread position: 13-286
Cow position: chrX:10300858-10300595 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 28, 139

Conread position: 13-303
Cow position: chrX:21414064-21414345 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 28, 159

Conread position: 13-311
Cow position: chrX:359989-360288 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 230
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 29, 165

Conread position: 13-311
Cow position: chrX:20741158-20740870 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 155

Conread position: 13-312
Cow position: chrX:21767102-21767393 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 28, 156

Conread position: 13-378
Cow position: chrX:14459936-14459576 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-378
Cow position: chrX:23453582-23453223 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 83

Conread position: 13-388
Cow position: chrX:33815352-33814985 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 264
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 89

Conread position: 13-398
Cow position: chrX:17664728-17664347 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 195

Conread position: 13-407
Cow position: chrX:37814620-37815010 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-409
Cow position: chrX:9086183-9086571 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 55

Conread position: 13-410
Cow position: chrX:30167604-30167218 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 277
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 80, 28

Conread position: 13-424
Cow position: chrX:20725440-20725848 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-435
Cow position: chrX:12312528-12312108 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 23

Conread position: 13-469
Cow position: chrX:38150069-38150525 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-485
Cow position: chrX:21751031-21750565 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-491
Cow position: chrX:3465892-3465411 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 88

Conread position: 13-498
Cow position: chrX:5549850-5550339 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-498
Cow position: chrX:22837451-22837940 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-518
Cow position: chrX:22126304-22125839 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 51

Conread position: 13-520
Cow position: chrX:29941650-29942156 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-522
Cow position: chrX:2145436-2145918 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 9

Conread position: 13-527
Cow position: chrX:29094845-29094331 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 151

Conread position: 13-530
Cow position: chrX:12464477-12464999 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 45

Conread position: 13-534
Cow position: chrX:21646811-21646284 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 204

Conread position: 13-559
Cow position: chrX:43437434-43436879 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-572
Cow position: chrX:2117920-2117370 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-572
Cow position: chrX:5426559-5427124 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 156

Conread position: 13-585
Cow position: chrX:15122692-15122115 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-585
Cow position: chrX:27983885-27983305 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 85

Conread position: 13-585
Cow position: chrX:30229642-30229067 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-586
Cow position: chrX:4906527-4905940 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 13-586
Cow position: chrX:26274615-26275186 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-587
Cow position: chrX:2814007-2813434 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-587
Cow position: chrX:5298771-5298192 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-587
Cow position: chrX:5865614-5866194 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 13-587
Cow position: chrX:11458341-11457766 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 85

Conread position: 13-587
Cow position: chrX:11462524-11461945 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-587
Cow position: chrX:12185554-12186146 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 153

Conread position: 13-587
Cow position: chrX:30181455-30180876 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-594
Cow position: chrX:26756170-26755582 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-595
Cow position: chrX:22611879-22612461 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 73

Conread position: 13-595
Cow position: chrX:23388078-23387475 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-595
Cow position: chrX:26231289-26230700 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chrX:3360292-3360880 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 102

Conread position: 13-596
Cow position: chrX:4623484-4622894 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chrX:5354831-5354243 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chrX:7552336-7551742 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 160

Conread position: 13-596
Cow position: chrX:9010803-9011390 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 199

Conread position: 13-596
Cow position: chrX:9095116-9095702 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 25

Conread position: 13-596
Cow position: chrX:11146867-11146274 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chrX:13406816-13406227 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 134

Conread position: 13-596
Cow position: chrX:16360533-16359948 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chrX:16702153-16702730 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 154

Conread position: 13-596
Cow position: chrX:16710438-16711015 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 154

Conread position: 13-596
Cow position: chrX:21225950-21226538 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 154

Conread position: 13-596
Cow position: chrX:21581912-21582502 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 71

Conread position: 13-596
Cow position: chrX:22492506-22493090 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chrX:22565215-22564624 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 156

Conread position: 13-596
Cow position: chrX:22810365-22810949 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chrX:23021789-23022377 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 18

Conread position: 13-596
Cow position: chrX:23039512-23038925 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chrX:23395076-23395666 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-596
Cow position: chrX:24444600-24443996 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 217

Conread position: 13-596
Cow position: chrX:24589259-24588675 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 209

Conread position: 13-596
Cow position: chrX:27317700-27318290 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 203

Conread position: 13-596
Cow position: chrX:29098895-29099476 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 28

Conread position: 13-596
Cow position: chrX:29916874-29916287 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 159

Conread position: 13-596
Cow position: chrX:31201311-31201900 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 5

Conread position: 13-596
Cow position: chrX:31495209-31495796 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 103

Conread position: 13-596
Cow position: chrX:39713022-39713610 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 154

Conread position: 13-601
Cow position: chrX:672522-671929 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-601
Cow position: chrX:2560478-2559896 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:3082668-3082066 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 61

Conread position: 13-601
Cow position: chrX:5332962-5332369 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 94

Conread position: 13-601
Cow position: chrX:8640257-8640852 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-601
Cow position: chrX:10529315-10528722 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:12144568-12145163 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:12359360-12359952 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:13929264-13928678 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-601
Cow position: chrX:14461788-14462382 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 72

Conread position: 13-601
Cow position: chrX:14597326-14597910 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:14782876-14782281 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 13-601
Cow position: chrX:15261147-15260555 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-601
Cow position: chrX:15622062-15621467 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 94

Conread position: 13-601
Cow position: chrX:16045441-16046037 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:16804396-16803803 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:16809343-16808750 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:17054040-17054632 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:18221884-18222479 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 84

Conread position: 13-601
Cow position: chrX:18657335-18656741 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 156

Conread position: 13-601
Cow position: chrX:19398247-19398842 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:19474679-19474084 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:19608146-19608739 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:24412497-24413091 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:27304412-27304993 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 63

Conread position: 13-601
Cow position: chrX:27595757-27595162 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:28519243-28518656 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 199

Conread position: 13-601
Cow position: chrX:29171311-29170717 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:31979364-31978777 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 47

Conread position: 13-601
Cow position: chrX:32064698-32064104 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:36194565-36195160 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:36536260-36535667 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-601
Cow position: chrX:37851615-37852200 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 81

Conread position: 13-602
Cow position: chrX:28606614-28606020 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 67

Conread position: 13-603
Cow position: chrX:7754376-7754972 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 13-604
Cow position: chrX:2047555-2048179 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 156

Conread position: 13-604
Cow position: chrX:5294873-5294280 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chrX:7484276-7484874 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 156

Conread position: 13-604
Cow position: chrX:12308293-12307695 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chrX:16278125-16278723 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 159

Conread position: 13-604
Cow position: chrX:16854888-16854298 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 20

Conread position: 13-604
Cow position: chrX:21793060-21793657 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 156

Conread position: 13-604
Cow position: chrX:23279496-23280091 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-604
Cow position: chrX:23573338-23572750 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 147

Conread position: 13-604
Cow position: chrX:25450804-25451405 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 13-604
Cow position: chrX:27591551-27590956 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 13-604
Cow position: chrX:30164759-30164171 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 88

Conread position: 13-604
Cow position: chrX:30166190-30165595 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 134

Conread position: 13-604
Cow position: chrX:39561190-39560592 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-610
Cow position: chrX:30137386-30136793 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-612
Cow position: chrX:11976977-11976370 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-612
Cow position: chrX:16036039-16035432 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 200

Conread position: 13-612
Cow position: chrX:24462965-24462365 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 52

Conread position: 13-612
Cow position: chrX:26442778-26442174 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 163

Conread position: 13-613
Cow position: chrX:10867382-10866785 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 13-613
Cow position: chrX:21591763-21592367 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 134

Conread position: 14-280
Cow position: chrX:15341522-15341770 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 30, 82

Conread position: 14-322
Cow position: chrX:36690984-36690679 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 27, 204

Conread position: 14-354
Cow position: chrX:3144282-3144604 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 243
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 27, 53

Conread position: 14-367
Cow position: chrX:22331300-22330958 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 249
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 31, 120

Conread position: 14-466
Cow position: chrX:13431463-13431010 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 154

Conread position: 14-489
Cow position: chrX:35023216-35023674 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 53

Conread position: 14-508
Cow position: chrX:4995131-4995616 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 75

Conread position: 14-521
Cow position: chrX:13281937-13282448 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 136

Conread position: 14-542
Cow position: chrX:13071975-13071442 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 14-542
Cow position: chrX:13092535-13092002 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 14-601
Cow position: chrX:15978481-15977889 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 14-601
Cow position: chrX:28753866-28753272 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 14-601
Cow position: chrX:29911805-29912403 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 14-612
Cow position: chrX:6236377-6235773 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 170

Conread position: 14-613
Cow position: chrX:12997439-12996834 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 54

Conread position: 14-613
Cow position: chrX:33829515-33830119 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 118

Conread position: 14-613
Cow position: chrX:34008256-34008847 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 151

Conread position: 14-624
Cow position: chrX:26623332-26622722 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 176

Conread position: 14-625
Cow position: chrX:24110135-24109517 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 16

Conread position: 15-303
Cow position: chrX:503404-503131 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 11, 60

Conread position: 15-576
Cow position: chrX:23327330-23326765 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 376
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 28, 100

Conread position: 15-586
Cow position: chrX:13888368-13888923 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 45

Conread position: 15-595
Cow position: chrX:30053997-30053410 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 154

Conread position: 16-382
Cow position: chrX:28648406-28648048 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 36

Conread position: 16-527
Cow position: chrX:15992784-15993292 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 331
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 25, 204

Conread position: 17-601
Cow position: chrX:24770383-24769792 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 152

Conread position: 19-613
Cow position: chrX:2009226-2008622 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 63

Conread position: 22-410
Cow position: chrX:12345415-12345804 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 147

Conread position: 22-601
Cow position: chrX:14125766-14125180 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 147

Conread position: 22-611
Cow position: chrX:27070323-27070920 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 125

Conread position: 23-610
Cow position: chrX:4327207-4326608 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 95

Conread position: 24-585
Cow position: chrX:1549446-1550011 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 145

Conread position: 26-435
Cow position: chrX:18243870-18243466 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 77

Conread position: 26-539
Cow position: chrX:5640393-5639882 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 22

Conread position: 27-520
Cow position: chrX:39387973-39387488 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 323
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 62, 39

Conread position: 27-604
Cow position: chrX:17781987-17782567 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 143

Conread position: 34-604
Cow position: chrX:16525295-16525857 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 30

Conread position: 38-546
Cow position: chrX:21317944-21318459 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 11

Conread position: 44-613
Cow position: chrX:23222526-23221966 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 5

Conread position: 48-455
Cow position: chrX:16407058-16407466 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 269
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 88, 100

Conread position: 48-541
Cow position: chrX:387644-388135 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 326
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 41, 16

Conread position: 48-596
Cow position: chrX:32145751-32145196 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 120

Conread position: 48-613
Cow position: chrX:5649869-5649324 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 386
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 126, 33

Conread position: 48-625
Cow position: chrX:40828590-40828018 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 63

Conread position: 50-612
Cow position: chrX:40694195-40693657 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 161

Conread position: 51-612
Cow position: chrX:24175437-24174874 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 57

Conread position: 63-587
Cow position: chrX:21892029-21892556 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 105

Conread position: 63-596
Cow position: chrX:322426-322973 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 106

Conread position: 63-596
Cow position: chrX:22077819-22077283 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 21

Conread position: 63-601
Cow position: chrX:4342272-4342815 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 148

Conread position: 64-595
Cow position: chrX:29908687-29908144 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 103

Conread position: 69-523
Cow position: chrX:16067843-16067391 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 301
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 85

Conread position: 72-601
Cow position: chrX:18462879-18463415 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 139

Conread position: 73-625
Cow position: chrX:41885657-41885091 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 139

Conread position: 74-596
Cow position: chrX:26446632-26447151 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 93

Conread position: 75-625
Cow position: chrX:37487479-37488038 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 66

Conread position: 84-596
Cow position: chrX:26530516-26531032 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 128

Conread position: 90-544
Cow position: chrX:41880573-41880118 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 77

Conread position: 90-587
Cow position: chrX:24734218-24734712 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 77

Conread position: 96-532
Cow position: chrX:19877385-19877835 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 143

Conread position: 96-601
Cow position: chrX:29225032-29225542 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 71

Conread position: 97-587
Cow position: chrX:7096014-7096507 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 9

Conread position: 103-587
Cow position: chrX:28212387-28212868 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 330
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 202, 56

Conread position: 104-568
Cow position: chrX:6657744-6658217 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 325
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 44, 108

Conread position: 107-595
Cow position: chrX:26617696-26618182 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 60

Conread position: 113-601
Cow position: chrX:34094277-34094770 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 54

Conread position: 115-604
Cow position: chrX:27497405-27497896 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 52

Conread position: 118-601
Cow position: chrX:9170029-9169541 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 49

Conread position: 119-596
Cow position: chrX:38588333-38587855 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 91

Conread position: 120-601
Cow position: chrX:39547981-39548463 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 47

Conread position: 122-556
Cow position: chrX:45112387-45112818 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 88

Conread position: 122-625
Cow position: chrX:20800369-20800876 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 92

Conread position: 125-454
Cow position: chrX:4481280-4481612 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 51

Conread position: 125-596
Cow position: chrX:29880696-29880218 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 85

Conread position: 134-625
Cow position: chrX:32129372-32129864 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 76

Conread position: 139-601
Cow position: chrX:11409737-11409270 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 139-604
Cow position: chrX:16041079-16040612 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 143-601
Cow position: chrX:21767397-21767864 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 109

Conread position: 146-596
Cow position: chrX:30059502-30059946 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 64

Conread position: 146-604
Cow position: chrX:22579772-22579320 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 146-613
Cow position: chrX:28879973-28879505 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 69

Conread position: 148-453
Cow position: chrX:46295974-46296278 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 219
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 26, 19

Conread position: 148-613
Cow position: chrX:42223147-42222693 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 24

Conread position: 149-585
Cow position: chrX:7571994-7572437 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 65

Conread position: 150-491
Cow position: chrX:1948822-1948479 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 245
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 24, 61

Conread position: 156-601
Cow position: chrX:30836001-30836451 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 11

Conread position: 157-585
Cow position: chrX:41155926-41156357 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 54

Conread position: 160-547
Cow position: chrX:45042477-45042082 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 178

Conread position: 172-562
Cow position: chrX:21494066-21494454 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 274
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 154, 38

Conread position: 173-601
Cow position: chrX:18024361-18023928 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 37

Conread position: 173-601
Cow position: chrX:37080883-37080451 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 37

Conread position: 180-562
Cow position: chrX:30286049-30286429 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 30

Conread position: 216-574
Cow position: chrX:23269519-23269152 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 258
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 112, 34

Conread position: 219-526
Cow position: chrX:30135642-30135326 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 34

Conread position: 219-574
Cow position: chrX:9067742-9068100 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 254
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 107, 29

Conread position: 219-587
Cow position: chrX:5290013-5289636 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 219-594
Cow position: chrX:24292992-24292606 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 16

Conread position: 219-601
Cow position: chrX:24345720-24346113 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 219-612
Cow position: chrX:2184911-2185301 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 270
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 105, 24

Conread position: 219-613
Cow position: chrX:34221451-34221830 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 35

Conread position: 219-613
Cow position: chrX:40070932-40070527 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 27

Conread position: 219-625
Cow position: chrX:2299566-2299973 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 29

Conread position: 219-625
Cow position: chrX:6044781-6044373 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 32

Conread position: 219-625
Cow position: chrX:38231596-38231180 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 220-596
Cow position: chrX:11951098-11950711 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 33

Conread position: 221-570
Cow position: chrX:2271294-2271650 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 236
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 61, 35

Conread position: 221-604
Cow position: chrX:38962173-38961783 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 32

Conread position: 222-455
Cow position: chrX:41305514-41305274 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 98, 28

Conread position: 223-604
Cow position: chrX:24316491-24316889 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 30

Conread position: 223-625
Cow position: chrX:9836588-9837002 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 7

Conread position: 225-604
Cow position: chrX:29082753-29083134 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 28

Conread position: 227-542
Cow position: chrX:4134234-4133911 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 26

Conread position: 233-534
Cow position: chrX:16301411-16301098 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 253

Conread position: 249-607
Cow position: chrX:39745953-39746327 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 237
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 65, 28

Conread position: 251-542
Cow position: chrX:37416874-37416581 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 196
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 77, 67

Conread position: 253-596
Cow position: chrX:29759401-29759747 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 257
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 67, 211

Conread position: 254-569
Cow position: chrX:5070861-5070543 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 224
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 123, 59

Conread position: 259-485
Cow position: chrX:15176431-15176193 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 261-435
Cow position: chrX:6671664-6671845 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 65, 0

Conread position: 261-601
Cow position: chrX:29287704-29288061 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 316

Conread position: 262-596
Cow position: chrX:5375567-5375218 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 124

Conread position: 262-604
Cow position: chrX:27615522-27615879 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 314

Conread position: 262-613
Cow position: chrX:25818110-25817741 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 263-604
Cow position: chrX:23342281-23341924 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 312

Conread position: 265-595
Cow position: chrX:30200275-30199934 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 126

Conread position: 269-610
Cow position: chrX:43074603-43074956 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 72

Conread position: 274-574
Cow position: chrX:41906010-41905695 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 14

Conread position: 275-604
Cow position: chrX:3650105-3649752 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 250
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 49, 229

Conread position: 280-572
Cow position: chrX:20952840-20953142 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 210
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 56, 35

Conread position: 280-595
Cow position: chrX:9535265-9535600 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 243
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 282

Conread position: 281-596
Cow position: chrX:18193418-18193749 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 281-613
Cow position: chrX:19396960-19397306 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 222
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 249

Conread position: 287-613
Cow position: chrX:35938325-35937999 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 240
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 45, 28

Conread position: 298-625
Cow position: chrX:25282749-25282407 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 239
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 36, 218

Conread position: 299-615
Cow position: chrX:6279854-6279520 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 239
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 56, 35

Conread position: 318-613
Cow position: chrX:13912177-13911869 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 17, 255

Conread position: 321-581
Cow position: chrX:29029919-29029658 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 169

Conread position: 326-541
Cow position: chrX:17228750-17228974 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 173
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 27, 149

Conread position: 326-601
Cow position: chrX:9228126-9227839 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 326-613
Cow position: chrX:38228535-38228241 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 117

Conread position: 327-572
Cow position: chrX:16344691-16344946 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 159

Conread position: 327-613
Cow position: chrX:6656241-6655942 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 130

Conread position: 334-576
Cow position: chrX:11905216-11904962 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 334-610
Cow position: chrX:7276747-7277032 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 19, 0

Conread position: 339-575
Cow position: chrX:23236831-23237080 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 347-491
Cow position: chrX:42009392-42009543 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 147

Conread position: 347-515
Cow position: chrX:900829-900654 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 50, 0

Conread position: 347-570
Cow position: chrX:31051629-31051399 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 52, 128

Conread position: 349-613
Cow position: chrX:4406685-4406959 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 200
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 48, 169

Conread position: 351-572
Cow position: chrX:1794373-1794153 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 138

Conread position: 354-615
Cow position: chrX:39556966-39556708 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 116, 57

Conread position: 386-625
Cow position: chrX:17664078-17663829 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 192
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 13, 240

Show alignments to all cow chromosomes.