Cow genome map
| Conread name: | rtra04_c13r1.y1 |
| Conread position: | 1-243 |
| Cow position: | chr28:22201180-22200930 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 1-414 |
| Cow position: | chr28:20035314-20034908 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 105, 35 |
| Conread position: | 1-443 |
| Cow position: | chr28:13880745-13880280 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-599 |
| Cow position: | chr28:10575800-10576408 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 87 |
| Conread position: | 1-599 |
| Cow position: | chr28:24302127-24302740 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 69 |
| Conread position: | 1-601 |
| Cow position: | chr28:17599768-17600388 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 166 |
| Conread position: | 2-600 |
| Cow position: | chr28:26923406-26924038 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 365 |
| Conread position: | 4-309 |
| Cow position: | chr28:28184613-28184276 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 4-351 |
| Cow position: | chr28:17602821-17603175 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 191, 44 |
| Conread position: | 4-377 |
| Cow position: | chr28:12952417-12952032 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 82 |
| Conread position: | 4-582 |
| Cow position: | chr28:12700865-12700282 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 389 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 4-599 |
| Cow position: | chr28:6230472-6231091 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 4-599 |
| Cow position: | chr28:7021397-7022018 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 304 |
| Conread position: | 4-600 |
| Cow position: | chr28:24620641-24621248 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 4-600 |
| Cow position: | chr28:29036430-29037051 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 387 |
| Conread position: | 4-600 |
| Cow position: | chr28:30098100-30097471 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 4-600 |
| Cow position: | chr28:32786205-32786829 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 307 |
| Conread position: | 4-601 |
| Cow position: | chr28:3004297-3004916 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 374 |
| Conread position: | 4-601 |
| Cow position: | chr28:8717731-8718379 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 294 |
| Conread position: | 4-601 |
| Cow position: | chr28:15917303-15917930 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 407 |
| Conread position: | 5-451 |
| Cow position: | chr28:10326277-10325820 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 6-601 |
| Cow position: | chr28:10599872-10599267 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 28 |
| Conread position: | 7-310 |
| Cow position: | chr28:12047328-12047646 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 182, 22 |
| Conread position: | 13-309 |
| Cow position: | chr28:24671006-24670685 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 8, 78 |
| Conread position: | 16-482 |
| Cow position: | chr28:4457535-4457053 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 296 |
| Conread position: | 20-409 |
| Cow position: | chr28:3068094-3067682 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 51-601 |
| Cow position: | chr28:4045392-4044827 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 120 |
| Conread position: | 58-384 |
| Cow position: | chr28:21379671-21379319 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 53, 312 |
| Conread position: | 71-309 |
| Cow position: | chr28:13373652-13373906 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 37, 92 |
| Conread position: | 75-312 |
| Cow position: | chr28:4376237-4376500 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 84-346 |
| Cow position: | chr28:7547874-7547590 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 206 |
| Conread position: | 95-601 |
| Cow position: | chr28:1384347-1384846 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 105-601 |
| Cow position: | chr28:25563524-25563017 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 407 |
| Conread position: | 108-578 |
| Cow position: | chr28:14505920-14505437 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 308 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 84, 10 |
| Conread position: | 211-601 |
| Cow position: | chr28:15576056-15575671 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 249 |
Show alignments to all cow chromosomes.