Cow genome map
| Conread name: | rtra04_c13r1.y1 |
| Conread position: | 1-243 |
| Cow position: | chr3:55374195-55373939 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 159 |
| Conread position: | 1-309 |
| Cow position: | chr3:60177991-60178315 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 27, 299 |
| Conread position: | 1-496 |
| Cow position: | chr3:56101374-56100877 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 1-549 |
| Cow position: | chr3:80930144-80930714 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 340 |
| Conread position: | 1-578 |
| Cow position: | chr3:45184875-45185465 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 364 |
| Conread position: | 1-599 |
| Cow position: | chr3:39555478-39556101 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 1-599 |
| Cow position: | chr3:66651228-66651837 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 85 |
| Conread position: | 1-601 |
| Cow position: | chr3:73304616-73303982 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 85 |
| Conread position: | 2-346 |
| Cow position: | chr3:58034528-58034906 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 268 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 4-319 |
| Cow position: | chr3:77272689-77273028 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 4-324 |
| Cow position: | chr3:5951509-5951855 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 4-538 |
| Cow position: | chr3:31418643-31418076 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 179 |
| Conread position: | 4-548 |
| Cow position: | chr3:1483136-1482568 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 428 |
| Conread position: | 4-589 |
| Cow position: | chr3:16293802-16294413 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 370 |
| Conread position: | 4-595 |
| Cow position: | chr3:53047686-53048296 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 201 |
| Conread position: | 4-599 |
| Cow position: | chr3:6875174-6875780 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 14 |
| Conread position: | 4-599 |
| Cow position: | chr3:72390063-72389441 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 4-600 |
| Cow position: | chr3:23287228-23287857 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 370 |
| Conread position: | 5-241 |
| Cow position: | chr3:64317840-64317591 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 100, 8 |
| Conread position: | 5-340 |
| Cow position: | chr3:49296855-49296492 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 19, 164 |
| Conread position: | 5-514 |
| Cow position: | chr3:61677644-61677117 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 246 |
| Conread position: | 13-601 |
| Cow position: | chr3:25689754-25689126 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 14-598 |
| Cow position: | chr3:36170840-36171442 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 139 |
| Conread position: | 14-599 |
| Cow position: | chr3:11509756-11510359 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 15-586 |
| Cow position: | chr3:26751090-26751674 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 249 |
| Conread position: | 23-340 |
| Cow position: | chr3:24904769-24904447 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 23-601 |
| Cow position: | chr3:9404148-9404747 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 68 |
| Conread position: | 40-363 |
| Cow position: | chr3:52726230-52726566 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 88-490 |
| Cow position: | chr3:50461354-50460941 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 89-508 |
| Cow position: | chr3:20888635-20889068 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 172 |
| Conread position: | 211-434 |
| Cow position: | chr3:48211087-48210860 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 113 |
| Conread position: | 218-506 |
| Cow position: | chr3:66847549-66847839 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 76, 81 |
Show alignments to all cow chromosomes.