Cow genome map
| Conread name: | rtra04_c13r1.y1 |
| Conread position: | 1-244 |
| Cow position: | chr5:51942664-51942409 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 7, 103 |
| Conread position: | 1-244 |
| Cow position: | chr5:51947617-51947362 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 7, 103 |
| Conread position: | 1-349 |
| Cow position: | chr5:41229032-41229402 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 169 |
| Conread position: | 1-407 |
| Cow position: | chr5:52605610-52606038 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 96 |
| Conread position: | 1-599 |
| Cow position: | chr5:49755312-49755937 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 1-600 |
| Cow position: | chr5:25928683-25929303 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 205 |
| Conread position: | 1-600 |
| Cow position: | chr5:30582341-30581722 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 4-243 |
| Cow position: | chr5:53834666-53834408 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 4-334 |
| Cow position: | chr5:26120441-26120099 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 4-443 |
| Cow position: | chr5:14636566-14637031 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 4-444 |
| Cow position: | chr5:58191930-58191467 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 381 |
| Conread position: | 4-494 |
| Cow position: | chr5:48534869-48534355 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 166 |
| Conread position: | 4-599 |
| Cow position: | chr5:27655756-27655151 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 105 |
| Conread position: | 4-600 |
| Cow position: | chr5:59279151-59278529 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 301 |
| Conread position: | 4-601 |
| Cow position: | chr5:4348976-4349617 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 4-601 |
| Cow position: | chr5:51746236-51745604 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 4-601 |
| Cow position: | chr5:55832823-55833463 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 146 |
| Conread position: | 5-348 |
| Cow position: | chr5:26466650-26466285 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 21, 174 |
| Conread position: | 5-601 |
| Cow position: | chr5:18883596-18884198 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 113 |
| Conread position: | 5-601 |
| Cow position: | chr5:24643851-24644477 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 180 |
| Conread position: | 14-413 |
| Cow position: | chr5:60146-60570 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 20-572 |
| Cow position: | chr5:24220138-24219559 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 48 |
| Conread position: | 23-539 |
| Cow position: | chr5:26403924-26404449 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 349 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 21, 160 |
| Conread position: | 27-601 |
| Cow position: | chr5:28222253-28222843 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 129 |
| Conread position: | 48-601 |
| Cow position: | chr5:57614226-57614788 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 213 |
| Conread position: | 55-599 |
| Cow position: | chr5:59083277-59083839 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 38 |
| Conread position: | 62-492 |
| Cow position: | chr5:28026406-28025964 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 229 |
| Conread position: | 109-599 |
| Cow position: | chr5:15362065-15361550 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 448 |
| Conread position: | 188-427 |
| Cow position: | chr5:58343165-58342913 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 211-458 |
| Cow position: | chr5:27005878-27005630 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 34, 147 |
| Conread position: | 211-499 |
| Cow position: | chr5:27490746-27490449 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 76 |
Show alignments to all cow chromosomes.