Cow genome map
| Conread name: | rtra04_c13r1.y1 |
| Conread position: | 1-312 |
| Cow position: | chrX:2185217-2184894 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 1-489 |
| Cow position: | chrX:27070838-27070319 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 355 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 20, 161 |
| Conread position: | 1-502 |
| Cow position: | chrX:30165671-30166198 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 388 |
| Conread position: | 1-515 |
| Cow position: | chrX:13069745-13070285 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 358 |
| Conread position: | 1-515 |
| Cow position: | chrX:13090306-13090846 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 358 |
| Conread position: | 1-600 |
| Cow position: | chrX:39697758-39697128 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 336 |
| Conread position: | 4-322 |
| Cow position: | chrX:2048100-2047761 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 20, 131 |
| Conread position: | 4-331 |
| Cow position: | chrX:30286394-30286046 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 169 |
| Conread position: | 4-358 |
| Cow position: | chrX:42222781-42223145 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 151 |
| Conread position: | 4-386 |
| Cow position: | chrX:20800777-20800369 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-386 |
| Cow position: | chrX:45112789-45112387 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 4-412 |
| Cow position: | chrX:24734652-24734224 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 314 |
| Conread position: | 4-423 |
| Cow position: | chrX:41880136-41880578 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 4-506 |
| Cow position: | chrX:20652405-20651881 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 4-536 |
| Cow position: | chrX:40693744-40694271 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 100 |
| Conread position: | 4-597 |
| Cow position: | chrX:6235859-6236485 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 301 |
| Conread position: | 4-599 |
| Cow position: | chrX:23280015-23279388 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 567 |
| Conread position: | 4-600 |
| Cow position: | chrX:5248378-5247754 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 343 |
| Conread position: | 4-600 |
| Cow position: | chrX:19398766-19398136 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 4-601 |
| Cow position: | chrX:21646291-21646920 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 260 |
| Conread position: | 4-601 |
| Cow position: | chrX:26275127-26274504 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 260 |
| Conread position: | 4-601 |
| Cow position: | chrX:33830031-33829403 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 5-301 |
| Cow position: | chrX:29083054-29082742 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 5-369 |
| Cow position: | chrX:5070584-5070962 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 5-523 |
| Cow position: | chrX:26508220-26507697 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 5-599 |
| Cow position: | chrX:21592280-21591653 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 403 |
| Conread position: | 5-600 |
| Cow position: | chrX:9095630-9095006 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 497 |
| Conread position: | 5-600 |
| Cow position: | chrX:18222400-18221775 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 591 |
| Conread position: | 5-600 |
| Cow position: | chrX:27591036-27591661 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 137 |
| Conread position: | 8-308 |
| Cow position: | chrX:9535527-9535202 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 304 |
| Conread position: | 13-308 |
| Cow position: | chrX:24316795-24316474 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 13-545 |
| Cow position: | chrX:11074183-11074729 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 140 |
| Conread position: | 13-599 |
| Cow position: | chrX:16067395-16068005 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 293 |
| Conread position: | 14-599 |
| Cow position: | chrX:24462461-24463074 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 328 |
| Conread position: | 20-601 |
| Cow position: | chrX:22125847-22126415 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 50-576 |
| Cow position: | chrX:2607357-2606813 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 341 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 61, 100 |
| Conread position: | 53-601 |
| Cow position: | chrX:36839630-36839080 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 107 |
| Conread position: | 57-590 |
| Cow position: | chrX:30113035-30112509 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 361 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 56, 117 |
| Conread position: | 67-339 |
| Cow position: | chrX:22119083-22119378 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 282 |
| Conread position: | 76-296 |
| Cow position: | chrX:41305275-41305518 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 76-383 |
| Cow position: | chrX:4481612-4481280 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 90-243 |
| Cow position: | chrX:6671851-6671686 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 106-599 |
| Cow position: | chrX:12345821-12345299 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 408 |
| Conread position: | 117-481 |
| Cow position: | chrX:18243483-18243870 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 317 |
| Conread position: | 134-601 |
| Cow position: | chrX:2145809-2145332 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 182 |
| Conread position: | 137-586 |
| Cow position: | chrX:17664348-17664824 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 146-591 |
| Cow position: | chrX:33814985-33815452 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 156 |
| Conread position: | 183-601 |
| Cow position: | chrX:503091-503513 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 156 |
| Conread position: | 209-522 |
| Cow position: | chrX:34006475-34006786 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 235, 36 |
| Conread position: | 210-599 |
| Cow position: | chrX:3155752-3156155 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 180 |
| Conread position: | 211-601 |
| Cow position: | chrX:360292-359880 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 379 |
| Conread position: | 211-601 |
| Cow position: | chrX:2117627-2118031 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 211-601 |
| Cow position: | chrX:26749506-26749907 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 94 |
| Conread position: | 212-516 |
| Cow position: | chrX:3144562-3144259 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 52 |
Show alignments to all cow chromosomes.