Cow genome map
| Conread name: | rtra04_d19r1.y1 |
| Conread position: | 1-246 |
| Cow position: | chr19:23614628-23614873 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 107, 118 |
| Conread position: | 1-252 |
| Cow position: | chr19:14940176-14940427 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-252 |
| Cow position: | chr19:14940344-14940595 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-252 |
| Cow position: | chr19:14940512-14940763 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 131, 127 |
| Conread position: | 1-252 |
| Cow position: | chr19:20635445-20635194 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-252 |
| Cow position: | chr19:20635529-20635278 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-252 |
| Cow position: | chr19:20677719-20677970 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 1-252 |
| Cow position: | chr19:20677803-20678054 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 46, 42 |
| Conread position: | 1-252 |
| Cow position: | chr19:20678139-20678390 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 1-252 |
| Cow position: | chr19:20678223-20678474 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-252 |
| Cow position: | chr19:20678307-20678558 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 1-252 |
| Cow position: | chr19:20678391-20678642 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 1-252 |
| Cow position: | chr19:23613788-23614039 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 59 |
| Conread position: | 1-252 |
| Cow position: | chr19:23614292-23614543 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-252 |
| Cow position: | chr19:23614544-23614795 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 126, 131 |
| Conread position: | 1-252 |
| Cow position: | chr19:43569952-43569703 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 220, 0 |
| Conread position: | 2-252 |
| Cow position: | chr19:14940009-14940259 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-252 |
| Cow position: | chr19:14940093-14940343 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 2-252 |
| Cow position: | chr19:23649743-23649993 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 122, 111 |
| Conread position: | 3-252 |
| Cow position: | chr19:14940262-14940511 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-252 |
| Cow position: | chr19:20677889-20678138 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 134, 116 |
| Conread position: | 5-247 |
| Cow position: | chr19:23614044-23614286 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-252 |
| Cow position: | chr19:14940768-14941015 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 210, 206 |
| Conread position: | 5-252 |
| Cow position: | chr19:14959711-14959466 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 5-252 |
| Cow position: | chr19:14960199-14959954 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 5-252 |
| Cow position: | chr19:20677639-20677886 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 103, 107 |
| Conread position: | 5-252 |
| Cow position: | chr19:23597137-23597384 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-252 |
| Cow position: | chr19:23614380-23614627 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-252 |
| Cow position: | chr19:43570116-43569869 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-235 |
| Cow position: | chr19:14959055-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 101, 111 |
| Conread position: | 7-252 |
| Cow position: | chr19:23650000-23650245 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 101, 113 |
| Conread position: | 8-252 |
| Cow position: | chr19:23614803-23615047 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 17-252 |
| Cow position: | chr19:23597065-23597300 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-252 |
| Cow position: | chr19:14959122-14958893 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-243 |
| Cow position: | chr19:14948338-14948121 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 81, 94 |
| Conread position: | 26-252 |
| Cow position: | chr19:23649851-23650077 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-252 |
| Cow position: | chr19:43570253-43570037 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 46-252 |
| Cow position: | chr19:20677596-20677802 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 66 |
| Conread position: | 47-252 |
| Cow position: | chr19:23613918-23614123 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-252 |
| Cow position: | chr19:20635646-20635446 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-252 |
| Cow position: | chr19:20635555-20635362 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 68-252 |
| Cow position: | chr19:23613351-23613535 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.