Cow genome map
| Conread name: | rtra04_k7r1.y1 |
| Conread position: | 50-478 |
| Cow position: | chr11:10758354-10757900 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 303 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 34, 184 |
| Conread position: | 53-480 |
| Cow position: | chr11:11319202-11318760 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 306 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 53-486 |
| Cow position: | chr11:61313434-61312994 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 294 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 65-489 |
| Cow position: | chr11:18926183-18926616 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 17, 79 |
| Conread position: | 67-475 |
| Cow position: | chr11:39432760-39433186 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 121, 45 |
| Conread position: | 67-478 |
| Cow position: | chr11:54630985-54631412 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 292 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 72-475 |
| Cow position: | chr11:35761379-35760954 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 46, 111 |
| Conread position: | 72-484 |
| Cow position: | chr11:53203601-53204030 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 150 |
| Conread position: | 73-420 |
| Cow position: | chr11:54327157-54327519 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 209, 9 |
| Conread position: | 74-475 |
| Cow position: | chr11:4692109-4692531 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 168 |
| Conread position: | 75-474 |
| Cow position: | chr11:54092296-54092708 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 302 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 80-474 |
| Cow position: | chr11:54509228-54509647 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 283 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 123, 171 |
| Conread position: | 81-474 |
| Cow position: | chr11:68431978-68431578 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 290 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 37, 8 |
| Conread position: | 81-476 |
| Cow position: | chr11:56303066-56303467 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 81-478 |
| Cow position: | chr11:75056917-75057283 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 83-474 |
| Cow position: | chr11:52311008-52310608 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 105 |
| Conread position: | 83-482 |
| Cow position: | chr11:84953409-84953834 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 84-469 |
| Cow position: | chr11:68594583-68594994 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 30, 150 |
| Conread position: | 84-471 |
| Cow position: | chr11:77029636-77030038 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 85-471 |
| Cow position: | chr11:74206678-74206283 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 115 |
| Conread position: | 96-474 |
| Cow position: | chr11:49982598-49983003 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 274 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 112-478 |
| Cow position: | chr11:12262894-12262518 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 57 |
| Conread position: | 117-474 |
| Cow position: | chr11:11470513-11470147 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 116, 40 |
| Conread position: | 117-478 |
| Cow position: | chr11:65755916-65755541 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 102, 134 |
| Conread position: | 127-471 |
| Cow position: | chr11:39490975-39491335 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 92, 33 |
| Conread position: | 136-471 |
| Cow position: | chr11:84807543-84807189 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 87, 108 |
| Conread position: | 145-465 |
| Cow position: | chr11:9073269-9073614 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 49, 86 |
| Conread position: | 167-429 |
| Cow position: | chr11:17765217-17764942 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 115, 78 |
| Conread position: | 167-474 |
| Cow position: | chr11:76675610-76675942 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 57, 78 |
| Conread position: | 172-483 |
| Cow position: | chr11:49483880-49483547 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 175-483 |
| Cow position: | chr11:40606428-40606107 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 186-473 |
| Cow position: | chr11:9292263-9291964 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 98, 40 |
| Conread position: | 191-475 |
| Cow position: | chr11:22998263-22998573 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 59 |
| Conread position: | 193-488 |
| Cow position: | chr11:61207293-61206985 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 212-482 |
| Cow position: | chr11:10120548-10120253 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 212-484 |
| Cow position: | chr11:9969767-9969483 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 131, 36 |
| Conread position: | 227-482 |
| Cow position: | chr11:50462224-50462499 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 230-478 |
| Cow position: | chr11:53921912-53922180 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 113, 15 |
| Conread position: | 232-471 |
| Cow position: | chr11:29655428-29655692 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 247-475 |
| Cow position: | chr11:40506556-40506306 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 248-474 |
| Cow position: | chr11:55081753-55082004 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 259-474 |
| Cow position: | chr11:55650101-55649872 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 114, 67 |
Show alignments to all cow chromosomes.