Cow genome map
| Conread name: | rtra04_k7r1.y1 |
| Conread position: | 51-482 |
| Cow position: | chrX:18896947-18896486 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 310 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 9, 204 |
| Conread position: | 59-477 |
| Cow position: | chrX:11904832-11904396 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 62, 96 |
| Conread position: | 65-471 |
| Cow position: | chrX:25150684-25151109 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 291 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 65-478 |
| Cow position: | chrX:40037608-40038026 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 184 |
| Conread position: | 68-474 |
| Cow position: | chrX:18459963-18459529 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 89 |
| Conread position: | 72-465 |
| Cow position: | chrX:11115666-11115273 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 72-465 |
| Cow position: | chrX:27949875-27950294 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 72-468 |
| Cow position: | chrX:4665118-4664697 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 291 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 72-481 |
| Cow position: | chrX:20970422-20970856 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 132 |
| Conread position: | 72-482 |
| Cow position: | chrX:48771323-48771747 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 277 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 76-478 |
| Cow position: | chrX:33674305-33673901 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 6, 42 |
| Conread position: | 79-471 |
| Cow position: | chrX:28666466-28666047 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 7, 78 |
| Conread position: | 81-484 |
| Cow position: | chrX:4499161-4499558 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 75 |
| Conread position: | 81-494 |
| Cow position: | chrX:27105377-27104946 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 26 |
| Conread position: | 82-425 |
| Cow position: | chrX:41106504-41106139 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 36, 171 |
| Conread position: | 83-462 |
| Cow position: | chrX:19741998-19741596 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 171 |
| Conread position: | 83-471 |
| Cow position: | chrX:23819709-23819311 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 83-478 |
| Cow position: | chrX:24006310-24005900 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 83-482 |
| Cow position: | chrX:37949299-37949710 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 74 |
| Conread position: | 88-475 |
| Cow position: | chrX:19595785-19596196 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 285 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 88-475 |
| Cow position: | chrX:22076385-22075994 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 90-471 |
| Cow position: | chrX:18769419-18769820 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 91-475 |
| Cow position: | chrX:17969334-17968922 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 161 |
| Conread position: | 101-482 |
| Cow position: | chrX:39288643-39288235 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 153 |
| Conread position: | 107-474 |
| Cow position: | chrX:20590518-20590901 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 10, 43 |
| Conread position: | 117-478 |
| Cow position: | chrX:43800498-43800120 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 168, 80 |
| Conread position: | 122-482 |
| Cow position: | chrX:37405517-37405893 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 100, 60 |
| Conread position: | 167-474 |
| Cow position: | chrX:42142034-42141714 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 167-482 |
| Cow position: | chrX:19807314-19807652 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 57, 83 |
| Conread position: | 172-474 |
| Cow position: | chrX:11914155-11914481 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 78 |
| Conread position: | 175-475 |
| Cow position: | chrX:29871838-29871520 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 101, 57 |
| Conread position: | 176-469 |
| Cow position: | chrX:23484790-23485110 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 176-486 |
| Cow position: | chrX:42044354-42044034 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 146, 69 |
| Conread position: | 182-473 |
| Cow position: | chrX:1748304-1748602 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 106, 29 |
| Conread position: | 185-485 |
| Cow position: | chrX:67633-67956 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 186-456 |
| Cow position: | chrX:40549236-40549530 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 64 |
| Conread position: | 194-474 |
| Cow position: | chrX:18794377-18794078 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 54 |
| Conread position: | 194-478 |
| Cow position: | chrX:29024069-29024376 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 195-474 |
| Cow position: | chrX:11108504-11108207 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 200-474 |
| Cow position: | chrX:42906753-42907036 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 6 |
| Conread position: | 202-484 |
| Cow position: | chrX:27647279-27647570 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 213-475 |
| Cow position: | chrX:14120737-14120457 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 214-482 |
| Cow position: | chrX:25014753-25014475 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 222-474 |
| Cow position: | chrX:20654561-20654806 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 230-474 |
| Cow position: | chrX:23192715-23192451 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 230-484 |
| Cow position: | chrX:11799372-11799645 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 248-478 |
| Cow position: | chrX:27419307-27419056 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 175 |
| Conread position: | 255-474 |
| Cow position: | chrX:41818730-41818499 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 27, 41 |
Show alignments to all cow chromosomes.