Non-Coding RNA Search

Cow genome map


           Conread name:
           rtra07_p17r1.y1
        

               Conread position:
               1-124
               

               Cow position:
               chrX:35388024-35387900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               96
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-157
               

               Cow position:
               chrX:38439356-38439515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-159
               

               Cow position:
               chrX:9997457-9997298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               35, 122
               

               Conread position:
               1-159
               

               Cow position:
               chrX:40647865-40648022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               33, 14
               

               Conread position:
               1-159
               

               Cow position:
               chrX:41743789-41743950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               1-161
               

               Cow position:
               chrX:14003763-14003608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               35, 111
               

               Conread position:
               1-172
               

               Cow position:
               chrX:19015316-19015487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               35, 89
               

               Conread position:
               1-172
               

               Cow position:
               chrX:34270279-34270452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               37, 89
               

               Conread position:
               1-174
               

               Cow position:
               chrX:42874859-42875035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               35, 123
               

               Conread position:
               1-177
               

               Cow position:
               chrX:36961517-36961696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               32, 116
               

               Conread position:
               1-185
               

               Cow position:
               chrX:13785485-13785297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-191
               

               Cow position:
               chrX:26876005-26875812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               35, 137
               

               Conread position:
               1-198
               

               Cow position:
               chrX:11589710-11589512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               37, 117
               

               Conread position:
               1-201
               

               Cow position:
               chrX:24105504-24105703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               35, 68
               

               Conread position:
               1-203
               

               Cow position:
               chrX:19003178-19003374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               35, 112
               

               Conread position:
               1-212
               

               Cow position:
               chrX:12405509-12405291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               1-215
               

               Cow position:
               chrX:2467761-2467977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               32, 95
               

               Conread position:
               1-215
               

               Cow position:
               chrX:37843598-37843810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               35, 83
               

               Conread position:
               1-216
               

               Cow position:
               chrX:45993101-45993324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               21, 120
               

               Conread position:
               1-235
               

               Cow position:
               chrX:7509020-7509252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               34, 125
               

               Conread position:
               1-239
               

               Cow position:
               chrX:45403952-45403708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               37, 138
               

               Conread position:
               1-239
               

               Cow position:
               chrX:47301024-47300786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               34, 59
               

               Conread position:
               1-242
               

               Cow position:
               chrX:43049226-43049451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               32, 113
               

               Conread position:
               1-247
               

               Cow position:
               chrX:40809564-40809818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               1-248
               

               Cow position:
               chrX:47484390-47484139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               32, 128
               

               Conread position:
               1-249
               

               Cow position:
               chrX:7571782-7572033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1-250
               

               Cow position:
               chrX:47186443-47186199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               37, 83
               

               Conread position:
               1-254
               

               Cow position:
               chrX:47481678-47481928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               34, 123
               

               Conread position:
               1-256
               

               Cow position:
               chrX:19273845-19273573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               1-257
               

               Cow position:
               chrX:27946181-27945919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               1-258
               

               Cow position:
               chrX:917486-917232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 46
               

               Conread position:
               1-259
               

               Cow position:
               chrX:10412107-10411847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 63
               

               Conread position:
               1-261
               

               Cow position:
               chrX:15147311-15147058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 113
               

               Conread position:
               1-261
               

               Cow position:
               chrX:29680382-29680122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 116
               

               Conread position:
               1-262
               

               Cow position:
               chrX:5017536-5017282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               36, 163
               

               Conread position:
               1-262
               

               Cow position:
               chrX:7497121-7497379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               94, 50
               

               Conread position:
               1-262
               

               Cow position:
               chrX:8917274-8917533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               33, 103
               

               Conread position:
               1-262
               

               Cow position:
               chrX:31294679-31294432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               35, 43
               

               Conread position:
               1-262
               

               Cow position:
               chrX:37489604-37489858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               37, 68
               

               Conread position:
               1-262
               

               Cow position:
               chrX:38227217-38226970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               33, 72
               

               Conread position:
               1-263
               

               Cow position:
               chrX:10865990-10865732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               33, 114
               

               Conread position:
               1-263
               

               Cow position:
               chrX:21672433-21672701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               33, 119
               

               Conread position:
               1-263
               

               Cow position:
               chrX:24288046-24287792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               1-263
               

               Cow position:
               chrX:33493656-33493917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               29, 43
               

               Conread position:
               1-263
               

               Cow position:
               chrX:34502800-34503061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 116
               

               Conread position:
               1-264
               

               Cow position:
               chrX:38853076-38853340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               194
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               35, 79
               

               Conread position:
               1-265
               

               Cow position:
               chrX:22821929-22822189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               58, 101
               

               Conread position:
               1-265
               

               Cow position:
               chrX:36778289-36778541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               29, 81
               

               Conread position:
               1-266
               

               Cow position:
               chrX:7695626-7695892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               37, 122
               

               Conread position:
               1-266
               

               Cow position:
               chrX:34441574-34441310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               32, 142
               

               Conread position:
               1-267
               

               Cow position:
               chrX:3579822-3580089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               35, 86
               

               Conread position:
               1-267
               

               Cow position:
               chrX:27174873-27175143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               36, 173
               

               Conread position:
               1-267
               

               Cow position:
               chrX:41879054-41878789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               199
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               37, 72
               

               Conread position:
               1-268
               

               Cow position:
               chrX:17725852-17726122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               1-268
               

               Cow position:
               chrX:45845977-45846247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1-269
               

               Cow position:
               chrX:9416815-9416537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               35, 162
               

               Conread position:
               1-269
               

               Cow position:
               chrX:44396897-44397157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               199
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               158, 111
               

               Conread position:
               1-270
               

               Cow position:
               chrX:7351177-7351445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               36, 121
               

               Conread position:
               1-270
               

               Cow position:
               chrX:23091759-23092021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               208
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               111, 35
               

               Conread position:
               1-270
               

               Cow position:
               chrX:23514137-23513874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 121
               

               Conread position:
               1-270
               

               Cow position:
               chrX:27705459-27705734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               203
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               29, 131
               

               Conread position:
               1-270
               

               Cow position:
               chrX:38006886-38006623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               35, 106
               

               Conread position:
               1-270
               

               Cow position:
               chrX:42470063-42469792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               35, 50
               

               Conread position:
               1-271
               

               Cow position:
               chrX:616384-616109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               198
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-271
               

               Cow position:
               chrX:619126-618859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               35, 211
               

               Conread position:
               1-271
               

               Cow position:
               chrX:5118624-5118350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               204
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               35, 88
               

               Conread position:
               1-271
               

               Cow position:
               chrX:5872195-5872466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               201
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               38, 103
               

               Conread position:
               1-271
               

               Cow position:
               chrX:6413922-6414190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               29, 112
               

               Conread position:
               1-271
               

               Cow position:
               chrX:7710665-7710390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               206
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               37, 123
               

               Conread position:
               1-271
               

               Cow position:
               chrX:8797129-8797398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 179
               

               Conread position:
               1-271
               

               Cow position:
               chrX:11085179-11084916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               202
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               35, 96
               

               Conread position:
               1-271
               

               Cow position:
               chrX:12309507-12309237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               1-271
               

               Cow position:
               chrX:12979949-12979685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               35, 80
               

               Conread position:
               1-271
               

               Cow position:
               chrX:14599411-14599681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 193
               

               Conread position:
               1-271
               

               Cow position:
               chrX:18204585-18204314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               41, 104
               

               Conread position:
               1-271
               

               Cow position:
               chrX:20340010-20339745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 26
               

               Conread position:
               1-271
               

               Cow position:
               chrX:20697729-20697462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               11, 94
               

               Conread position:
               1-271
               

               Cow position:
               chrX:21593165-21593436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               37, 112
               

               Conread position:
               1-271
               

               Cow position:
               chrX:22074678-22074949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               35, 69
               

               Conread position:
               1-271
               

               Cow position:
               chrX:22812942-22813211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               35, 89
               

               Conread position:
               1-271
               

               Cow position:
               chrX:23785535-23785797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               32, 75
               

               Conread position:
               1-271
               

               Cow position:
               chrX:25816022-25815753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               101, 37
               

               Conread position:
               1-271
               

               Cow position:
               chrX:27772083-27771819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               33, 93
               

               Conread position:
               1-271
               

               Cow position:
               chrX:28134228-28134491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               76, 29
               

               Conread position:
               1-271
               

               Cow position:
               chrX:31252296-31252556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 120
               

               Conread position:
               1-271
               

               Cow position:
               chrX:31311907-31312178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 80
               

               Conread position:
               1-271
               

               Cow position:
               chrX:32820906-32821177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 121
               

               Conread position:
               1-271
               

               Cow position:
               chrX:34238598-34238871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               32, 61
               

               Conread position:
               1-271
               

               Cow position:
               chrX:34411722-34411995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               103, 24
               

               Conread position:
               1-271
               

               Cow position:
               chrX:35542773-35543036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               35, 97
               

               Conread position:
               1-271
               

               Cow position:
               chrX:36283227-36283488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               41, 96
               

               Conread position:
               1-271
               

               Cow position:
               chrX:36975827-36976100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               32, 83
               

               Conread position:
               1-271
               

               Cow position:
               chrX:38935163-38935427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               1-271
               

               Cow position:
               chrX:40269366-40269643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-271
               

               Cow position:
               chrX:40320283-40320555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               37, 96
               

               Conread position:
               1-271
               

               Cow position:
               chrX:40557803-40557527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1-271
               

               Cow position:
               chrX:41526643-41526380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               35, 71
               

               Conread position:
               1-271
               

               Cow position:
               chrX:41884536-41884263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               193
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1-271
               

               Cow position:
               chrX:46433364-46433641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               203
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               33, 122
               

               Conread position:
               1-272
               

               Cow position:
               chrX:27228001-27228277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 121
               

               Conread position:
               1-272
               

               Cow position:
               chrX:46532628-46532344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               205
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1-274
               

               Cow position:
               chrX:39126211-39126479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               159, 94
               

               Conread position:
               1-275
               

               Cow position:
               chrX:6278624-6278345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 125
               

               Conread position:
               1-276
               

               Cow position:
               chrX:10831615-10831334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               205
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               37, 223
               

               Conread position:
               1-276
               

               Cow position:
               chrX:37955711-37956001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               37, 82
               

               Conread position:
               1-278
               

               Cow position:
               chrX:7161938-7162210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               35, 97
               

               Conread position:
               1-280
               

               Cow position:
               chrX:38728615-38728892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 117
               

               Conread position:
               1-296
               

               Cow position:
               chrX:11717906-11717610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 37
               

               Conread position:
               1-296
               

               Cow position:
               chrX:42492637-42492353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 70
               

               Conread position:
               1-297
               

               Cow position:
               chrX:11614577-11614874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 94
               

               Conread position:
               1-304
               

               Cow position:
               chrX:22387365-22387068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               215
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               37, 113
               

               Conread position:
               1-321
               

               Cow position:
               chrX:35383138-35382828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               36, 67
               

               Conread position:
               1-322
               

               Cow position:
               chrX:1176101-1175775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               41, 99
               

               Conread position:
               1-322
               

               Cow position:
               chrX:34505169-34504838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               35, 71
               

               Conread position:
               1-322
               

               Cow position:
               chrX:41673986-41674312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               20, 95
               

               Conread position:
               1-322
               

               Cow position:
               chrX:43779969-43779650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               224
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               26, 113
               

               Conread position:
               1-323
               

               Cow position:
               chrX:29545000-29544670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               33, 125
               

               Conread position:
               1-327
               

               Cow position:
               chrX:31260748-31260405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               37, 53
               

               Conread position:
               1-327
               

               Cow position:
               chrX:40692873-40692552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               58, 47
               

               Conread position:
               1-328
               

               Cow position:
               chrX:31436356-31436690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 79
               

               Conread position:
               1-329
               

               Cow position:
               chrX:1499543-1499876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 82
               

               Conread position:
               1-329
               

               Cow position:
               chrX:7646134-7646458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 69
               

               Conread position:
               1-329
               

               Cow position:
               chrX:15007272-15006937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 94
               

               Conread position:
               1-329
               

               Cow position:
               chrX:17662715-17662399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 116
               

               Conread position:
               1-329
               

               Cow position:
               chrX:17794863-17795201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               35, 19
               

               Conread position:
               1-329
               

               Cow position:
               chrX:21986414-21986079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1-329
               

               Cow position:
               chrX:27509142-27508802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               160, 35
               

               Conread position:
               1-329
               

               Cow position:
               chrX:30421051-30420745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               37, 80
               

               Conread position:
               1-329
               

               Cow position:
               chrX:31729321-31729659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               153, 119
               

               Conread position:
               1-329
               

               Cow position:
               chrX:34313911-34314243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               32, 17
               

               Conread position:
               1-329
               

               Cow position:
               chrX:45598722-45598386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               133, 111
               

               Conread position:
               1-330
               

               Cow position:
               chrX:30962996-30962652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               37, 117
               

               Conread position:
               1-330
               

               Cow position:
               chrX:35288536-35288861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               1-334
               

               Cow position:
               chrX:4632974-4632627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               253
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               32, 85
               

               Conread position:
               1-334
               

               Cow position:
               chrX:9201428-9201770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 115
               

               Conread position:
               1-334
               

               Cow position:
               chrX:11073310-11072992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               1-334
               

               Cow position:
               chrX:11655970-11656305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 113
               

               Conread position:
               1-334
               

               Cow position:
               chrX:11939049-11938726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               32, 78
               

               Conread position:
               1-334
               

               Cow position:
               chrX:14884080-14883730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-334
               

               Cow position:
               chrX:20887768-20887422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               67, 42
               

               Conread position:
               1-334
               

               Cow position:
               chrX:22624362-22624687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               101, 34
               

               Conread position:
               1-334
               

               Cow position:
               chrX:26492884-26493234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               33, 117
               

               Conread position:
               1-334
               

               Cow position:
               chrX:27432036-27431697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               35, 109
               

               Conread position:
               1-334
               

               Cow position:
               chrX:38094645-38094299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 185
               

               Conread position:
               1-334
               

               Cow position:
               chrX:38549330-38549674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 37
               

               Conread position:
               1-334
               

               Cow position:
               chrX:42994494-42994823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               231
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               37, 57
               

               Conread position:
               1-334
               

               Cow position:
               chrX:45976798-45977151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               33, 324
               

               Conread position:
               1-336
               

               Cow position:
               chrX:29542341-29541999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               236
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               36, 261
               

               Conread position:
               1-337
               

               Cow position:
               chrX:20376843-20377173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               32, 221
               

               Conread position:
               1-343
               

               Cow position:
               chrX:13912957-13913311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               252
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               34, 42
               

               Conread position:
               1-343
               

               Cow position:
               chrX:31442944-31442604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 69
               

               Conread position:
               1-344
               

               Cow position:
               chrX:34792429-34792086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               248
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               36, 8
               

               Conread position:
               1-345
               

               Cow position:
               chrX:16762644-16763007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               257
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               39, 75
               

               Conread position:
               1-347
               

               Cow position:
               chrX:20677250-20677604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               1-347
               

               Cow position:
               chrX:29723619-29723990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               33, 117
               

               Conread position:
               1-347
               

               Cow position:
               chrX:45110537-45110890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               39, 20
               

               Conread position:
               1-349
               

               Cow position:
               chrX:33466489-33466864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               264
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               101, 116
               

               Conread position:
               1-349
               

               Cow position:
               chrX:41870951-41871300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 66
               

               Conread position:
               1-350
               

               Cow position:
               chrX:4399007-4399361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               259
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               35, 67
               

               Conread position:
               1-352
               

               Cow position:
               chrX:3654486-3654849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               241
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               37, 111
               

               Conread position:
               1-359
               

               Cow position:
               chrX:6544134-6544497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               247
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               35, 79
               

               Conread position:
               1-364
               

               Cow position:
               chrX:35224174-35224532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               15, 22
               

               Conread position:
               1-366
               

               Cow position:
               chrX:36355993-36356365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 70
               

               Conread position:
               2-159
               

               Cow position:
               chrX:35969207-35969050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               36, 5
               

               Conread position:
               2-249
               

               Cow position:
               chrX:27516407-27516646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               31, 161
               

               Conread position:
               2-254
               

               Cow position:
               chrX:37232292-37232539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               34, 113
               

               Conread position:
               2-264
               

               Cow position:
               chrX:9635302-9635049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               34, 46
               

               Conread position:
               2-271
               

               Cow position:
               chrX:45414421-45414156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               34, 115
               

               Conread position:
               2-329
               

               Cow position:
               chrX:8869523-8869182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 34
               

               Conread position:
               2-329
               

               Cow position:
               chrX:27145502-27145821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               34, 93
               

               Conread position:
               2-329
               

               Cow position:
               chrX:38218590-38218935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               2-329
               

               Cow position:
               chrX:40826876-40826528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               19, 120
               

               Conread position:
               2-347
               

               Cow position:
               chrX:20584203-20584551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 262
               

               Conread position:
               2-349
               

               Cow position:
               chrX:13177586-13177241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               31, 68
               

               Conread position:
               3-160
               

               Cow position:
               chrX:29509564-29509401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               38, 125
               

               Conread position:
               3-236
               

               Cow position:
               chrX:15814967-15815197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               30, 68
               

               Conread position:
               3-268
               

               Cow position:
               chrX:27119579-27119838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               31, 85
               

               Conread position:
               3-270
               

               Cow position:
               chrX:13647905-13647637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               195
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               31, 88
               

               Conread position:
               3-270
               

               Cow position:
               chrX:36067897-36068163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               99, 16
               

               Conread position:
               3-271
               

               Cow position:
               chrX:26881688-26881415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               3-273
               

               Cow position:
               chrX:42171416-42171146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 217
               

               Conread position:
               3-327
               

               Cow position:
               chrX:40685451-40685109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               240
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               3-329
               

               Cow position:
               chrX:45502032-45502357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               33, 52
               

               Conread position:
               3-334
               

               Cow position:
               chrX:7721869-7722201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 185
               

               Conread position:
               4-173
               

               Cow position:
               chrX:35681219-35681393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               29, 130
               

               Conread position:
               4-175
               

               Cow position:
               chrX:48243580-48243413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               34, 48
               

               Conread position:
               4-177
               

               Cow position:
               chrX:41992165-41991990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               29, 94
               

               Conread position:
               4-262
               

               Cow position:
               chrX:9365794-9365536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 118
               

               Conread position:
               4-263
               

               Cow position:
               chrX:48385479-48385228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               30, 117
               

               Conread position:
               4-269
               

               Cow position:
               chrX:16416391-16416645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               34, 54
               

               Conread position:
               4-270
               

               Cow position:
               chrX:31949053-31948787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               34, 13
               

               Conread position:
               4-271
               

               Cow position:
               chrX:42873273-42873534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               4-271
               

               Cow position:
               chrX:43730337-43730075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 7
               

               Conread position:
               4-321
               

               Cow position:
               chrX:34543667-34544000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               243
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               35, 80
               

               Conread position:
               4-322
               

               Cow position:
               chrX:6488457-6488780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               236
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               29, 116
               

               Conread position:
               4-322
               

               Cow position:
               chrX:11856309-11856617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               34, 74
               

               Conread position:
               4-322
               

               Cow position:
               chrX:45875272-45875605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               37, 105
               

               Conread position:
               4-329
               

               Cow position:
               chrX:11633559-11633904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 119
               

               Conread position:
               4-332
               

               Cow position:
               chrX:41027038-41027385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               4-334
               

               Cow position:
               chrX:25207962-25207634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               34, 80
               

               Conread position:
               4-342
               

               Cow position:
               chrX:38071884-38071554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               30, 93
               

               Conread position:
               4-344
               

               Cow position:
               chrX:43115032-43115386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               18, 94
               

               Conread position:
               4-346
               

               Cow position:
               chrX:4403195-4403557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               249
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               30, 79
               

               Conread position:
               4-359
               

               Cow position:
               chrX:34532402-34532767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               26, 81
               

               Conread position:
               5-158
               

               Cow position:
               chrX:17908404-17908253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               33, 62
               

               Conread position:
               5-158
               

               Cow position:
               chrX:30832965-30832817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               31, 76
               

               Conread position:
               5-167
               

               Cow position:
               chrX:17497967-17498130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               32, 89
               

               Conread position:
               5-177
               

               Cow position:
               chrX:28845714-28845888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               33, 12
               

               Conread position:
               5-192
               

               Cow position:
               chrX:14900840-14900663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               98, 63
               

               Conread position:
               5-195
               

               Cow position:
               chrX:6234571-6234376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               33, 115
               

               Conread position:
               5-209
               

               Cow position:
               chrX:20709957-20710161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               28, 95
               

               Conread position:
               5-213
               

               Cow position:
               chrX:26440897-26440694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               28, 113
               

               Conread position:
               5-214
               

               Cow position:
               chrX:34662968-34662754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               5-224
               

               Cow position:
               chrX:21642596-21642380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               33, 50
               

               Conread position:
               5-225
               

               Cow position:
               chrX:40116303-40116518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               33, 77
               

               Conread position:
               5-227
               

               Cow position:
               chrX:27680281-27680503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               31, 51
               

               Conread position:
               5-235
               

               Cow position:
               chrX:21004564-21004797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               34, 84
               

               Conread position:
               5-237
               

               Cow position:
               chrX:38936582-38936815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               97, 33
               

               Conread position:
               5-243
               

               Cow position:
               chrX:22921198-22921441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               33, 227
               

               Conread position:
               5-253
               

               Cow position:
               chrX:1514525-1514288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               33, 71
               

               Conread position:
               5-262
               

               Cow position:
               chrX:34315407-34315661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               196
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               107, 31
               

               Conread position:
               5-264
               

               Cow position:
               chrX:6260276-6260007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               30, 126
               

               Conread position:
               5-270
               

               Cow position:
               chrX:37781229-37780960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               194
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               31, 122
               

               Conread position:
               5-271
               

               Cow position:
               chrX:870288-870034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               97, 63
               

               Conread position:
               5-271
               

               Cow position:
               chrX:5679684-5679423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 84
               

               Conread position:
               5-271
               

               Cow position:
               chrX:7718735-7718981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               17, 79
               

               Conread position:
               5-271
               

               Cow position:
               chrX:8730968-8731242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               33, 88
               

               Conread position:
               5-271
               

               Cow position:
               chrX:11844365-11844092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               34, 70
               

               Conread position:
               5-271
               

               Cow position:
               chrX:13382211-13382474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 122
               

               Conread position:
               5-271
               

               Cow position:
               chrX:27394137-27393877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 79
               

               Conread position:
               5-271
               

               Cow position:
               chrX:32330040-32330319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               33, 50
               

               Conread position:
               5-271
               

               Cow position:
               chrX:34401880-34402155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 136
               

               Conread position:
               5-271
               

               Cow position:
               chrX:35268764-35269010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               33, 67
               

               Conread position:
               5-271
               

               Cow position:
               chrX:37836470-37836727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               34, 114
               

               Conread position:
               5-297
               

               Cow position:
               chrX:37910328-37910618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 76
               

               Conread position:
               5-310
               

               Cow position:
               chrX:13853504-13853807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               213
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               38, 15
               

               Conread position:
               5-315
               

               Cow position:
               chrX:41068603-41068928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 10
               

               Conread position:
               5-320
               

               Cow position:
               chrX:1616162-1615845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 175
               

               Conread position:
               5-321
               

               Cow position:
               chrX:12249685-12250029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               245
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               33, 47
               

               Conread position:
               5-322
               

               Cow position:
               chrX:4768626-4768943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               242
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               94, 75
               

               Conread position:
               5-322
               

               Cow position:
               chrX:20151728-20152063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               244
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               34, 189
               

               Conread position:
               5-322
               

               Cow position:
               chrX:28847000-28846677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               234
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               34, 100
               

               Conread position:
               5-322
               

               Cow position:
               chrX:42247303-42246966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               5-328
               

               Cow position:
               chrX:4043970-4043662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 31
               

               Conread position:
               5-329
               

               Cow position:
               chrX:4825943-4825626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               56, 70
               

               Conread position:
               5-329
               

               Cow position:
               chrX:5638283-5637957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 50
               

               Conread position:
               5-329
               

               Cow position:
               chrX:29120928-29121243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 123
               

               Conread position:
               5-329
               

               Cow position:
               chrX:29601948-29601607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               5-334
               

               Cow position:
               chrX:7178785-7179110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               227
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               31, 15
               

               Conread position:
               5-334
               

               Cow position:
               chrX:8925583-8925907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 123
               

               Conread position:
               5-334
               

               Cow position:
               chrX:27446572-27446910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               238
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               29, 113
               

               Conread position:
               5-345
               

               Cow position:
               chrX:38963987-38964334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 334
               

               Conread position:
               6-179
               

               Cow position:
               chrX:9855187-9855355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               24, 76
               

               Conread position:
               6-179
               

               Cow position:
               chrX:9954028-9954196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               6-182
               

               Cow position:
               chrX:12018171-12018352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               13, 116
               

               Conread position:
               6-235
               

               Cow position:
               chrX:21566285-21566520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               6-239
               

               Cow position:
               chrX:46722854-46722617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               32, 121
               

               Conread position:
               6-258
               

               Cow position:
               chrX:11082731-11082486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               32, 63
               

               Conread position:
               6-259
               

               Cow position:
               chrX:44961632-44961888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               34, 5
               

               Conread position:
               6-262
               

               Cow position:
               chrX:45968045-45968288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               156, 19
               

               Conread position:
               6-271
               

               Cow position:
               chrX:23563910-23563642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               30, 104
               

               Conread position:
               6-271
               

               Cow position:
               chrX:31250276-31250537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               97, 7
               

               Conread position:
               6-271
               

               Cow position:
               chrX:34554607-34554872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               31, 90
               

               Conread position:
               6-274
               

               Cow position:
               chrX:6563403-6563672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               24, 124
               

               Conread position:
               6-296
               

               Cow position:
               chrX:151785-152073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               32, 113
               

               Conread position:
               6-328
               

               Cow position:
               chrX:1503221-1503528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               235
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               32, 75
               

               Conread position:
               6-334
               

               Cow position:
               chrX:25338066-25338391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               27, 215
               

               Conread position:
               6-336
               

               Cow position:
               chrX:39415484-39415161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               233
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               27, 66
               

               Conread position:
               6-349
               

               Cow position:
               chrX:39938637-39938295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               89, 41
               

               Conread position:
               7-183
               

               Cow position:
               chrX:41167081-41166901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               31, 113
               

               Conread position:
               7-220
               

               Cow position:
               chrX:27685131-27685347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               26, 124
               

               Conread position:
               7-262
               

               Cow position:
               chrX:44657079-44656817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               25, 147
               

               Conread position:
               7-265
               

               Cow position:
               chrX:40480985-40480725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               31, 111
               

               Conread position:
               7-268
               

               Cow position:
               chrX:878493-878234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               193
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               29, 62
               

               Conread position:
               7-271
               

               Cow position:
               chrX:17888530-17888274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 43
               

               Conread position:
               7-271
               

               Cow position:
               chrX:24331662-24331925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               28, 112
               

               Conread position:
               7-271
               

               Cow position:
               chrX:33639855-33640124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               28, 55
               

               Conread position:
               7-271
               

               Cow position:
               chrX:40035558-40035291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 40
               

               Conread position:
               7-271
               

               Cow position:
               chrX:48010482-48010753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               7-306
               

               Cow position:
               chrX:14275850-14275549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               29, 41
               

               Conread position:
               7-320
               

               Cow position:
               chrX:46291023-46291354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               29, 14
               

               Conread position:
               7-321
               

               Cow position:
               chrX:15545777-15546095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               31, 75
               

               Conread position:
               7-322
               

               Cow position:
               chrX:46587701-46588035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               7-334
               

               Cow position:
               chrX:9425856-9425534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               230
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               35, 95
               

               Conread position:
               7-347
               

               Cow position:
               chrX:10959513-10959176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 255
               

               Conread position:
               8-264
               

               Cow position:
               chrX:34565168-34565425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 35
               

               Conread position:
               8-269
               

               Cow position:
               chrX:45174734-45174999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               27, 50
               

               Conread position:
               8-271
               

               Cow position:
               chrX:6265712-6265450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               93, 30
               

               Conread position:
               8-297
               

               Cow position:
               chrX:2300812-2301094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               87, 33
               

               Conread position:
               8-297
               

               Cow position:
               chrX:6041328-6041039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               194
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               25, 87
               

               Conread position:
               8-322
               

               Cow position:
               chrX:35885845-35885517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               233
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               30, 92
               

               Conread position:
               8-327
               

               Cow position:
               chrX:40567488-40567825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               30, 66
               

               Conread position:
               8-349
               

               Cow position:
               chrX:48236702-48237058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               37, 107
               

               Conread position:
               9-270
               

               Cow position:
               chrX:42381216-42380964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               27, 53
               

               Conread position:
               9-329
               

               Cow position:
               chrX:42927933-42927608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               225
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               24, 101
               

               Conread position:
               9-347
               

               Cow position:
               chrX:4269181-4268830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               21, 114
               

               Conread position:
               10-182
               

               Cow position:
               chrX:19188824-19188991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               28, 108
               

               Conread position:
               10-192
               

               Cow position:
               chrX:20790808-20790983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               28, 107
               

               Conread position:
               10-250
               

               Cow position:
               chrX:18695036-18694803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               181
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               150, 83
               

               Conread position:
               10-264
               

               Cow position:
               chrX:30338055-30337815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               29, 35
               

               Conread position:
               10-267
               

               Cow position:
               chrX:29289467-29289723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               24, 44
               

               Conread position:
               10-269
               

               Cow position:
               chrX:45113504-45113767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               28, 105
               

               Conread position:
               10-271
               

               Cow position:
               chrX:28866112-28865856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               23, 57
               

               Conread position:
               10-271
               

               Cow position:
               chrX:38654543-38654292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               32, 42
               

               Conread position:
               10-297
               

               Cow position:
               chrX:32431511-32431794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               27, 46
               

               Conread position:
               10-322
               

               Cow position:
               chrX:14973854-14973542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               28, 117
               

               Conread position:
               10-326
               

               Cow position:
               chrX:9651138-9650808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               26, 70
               

               Conread position:
               10-329
               

               Cow position:
               chrX:35413507-35413816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               32, 109
               

               Conread position:
               10-329
               

               Cow position:
               chrX:46072933-46072608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               10-336
               

               Cow position:
               chrX:23497781-23497468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               28, 108
               

               Conread position:
               10-346
               

               Cow position:
               chrX:33539052-33539390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               26, 108
               

               Conread position:
               10-348
               

               Cow position:
               chrX:41122954-41123286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 76
               

               Conread position:
               11-174
               

               Cow position:
               chrX:42461856-42461692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               23, 108
               

               Conread position:
               11-224
               

               Cow position:
               chrX:44873673-44873459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               27, 178
               

               Conread position:
               11-241
               

               Cow position:
               chrX:26625782-26625552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               180
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               25, 58
               

               Conread position:
               11-254
               

               Cow position:
               chrX:39558462-39558217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 113
               

               Conread position:
               11-265
               

               Cow position:
               chrX:28013560-28013301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               21, 106
               

               Conread position:
               11-275
               

               Cow position:
               chrX:42235640-42235372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 253
               

               Conread position:
               11-276
               

               Cow position:
               chrX:30543399-30543129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               82, 123
               

               Conread position:
               11-296
               

               Cow position:
               chrX:28878281-28877998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               216
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               24, 14
               

               Conread position:
               11-321
               

               Cow position:
               chrX:37119483-37119789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 151
               

               Conread position:
               11-322
               

               Cow position:
               chrX:6407437-6407759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               239
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               27, 59
               

               Conread position:
               11-322
               

               Cow position:
               chrX:32420107-32420426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               29, 92
               

               Conread position:
               11-329
               

               Cow position:
               chrX:30133434-30133102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               242
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               22, 113
               

               Conread position:
               11-346
               

               Cow position:
               chrX:44054690-44055042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               26, 114
               

               Conread position:
               12-139
               

               Cow position:
               chrX:10079560-10079431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               12-206
               

               Cow position:
               chrX:4992127-4991929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               13, 73
               

               Conread position:
               12-262
               

               Cow position:
               chrX:29194123-29194370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 61
               

               Conread position:
               12-265
               

               Cow position:
               chrX:43567811-43568062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 101
               

               Conread position:
               12-271
               

               Cow position:
               chrX:17949601-17949344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               25, 108
               

               Conread position:
               12-271
               

               Cow position:
               chrX:20801664-20801919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               26, 106
               

               Conread position:
               12-367
               

               Cow position:
               chrX:23940136-23939814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               127, 25
               

               Conread position:
               13-296
               

               Cow position:
               chrX:45670117-45670393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               121, 23
               

               Conread position:
               14-255
               

               Cow position:
               chrX:7277810-7278044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               83, 24
               

               Conread position:
               15-336
               

               Cow position:
               chrX:37574743-37575045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               21, 49
               

               Conread position:
               16-334
               

               Cow position:
               chrX:13923764-13924088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               17, 84
               

               Conread position:
               17-260
               

               Cow position:
               chrX:6690363-6690122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 49
               

               Conread position:
               17-271
               

               Cow position:
               chrX:169646-169397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               16, 52
               

               Conread position:
               20-260
               

               Cow position:
               chrX:48044617-48044378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               19, 100
               

               Conread position:
               20-271
               

               Cow position:
               chrX:34376844-34377091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               16, 44
               

               Conread position:
               20-271
               

               Cow position:
               chrX:46032825-46032578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               13, 90
               

               Conread position:
               20-321
               

               Cow position:
               chrX:33000800-33001112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               20-334
               

               Cow position:
               chrX:24365930-24365595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               20-343
               

               Cow position:
               chrX:12290623-12290954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               237
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               13, 53
               

               Conread position:
               21-271
               

               Cow position:
               chrX:31489420-31489669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               109, 15
               

               Conread position:
               23-271
               

               Cow position:
               chrX:15231758-15231511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               11, 59
               

               Conread position:
               24-329
               

               Cow position:
               chrX:10516157-10516476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               14, 43
               

               Conread position:
               26-334
               

               Cow position:
               chrX:9252256-9251936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               232
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               136, 17
               

               Conread position:
               29-211
               

               Cow position:
               chrX:1572230-1572050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               133, 86
               

               Conread position:
               29-344
               

               Cow position:
               chrX:29050154-29050478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               232
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               73, 152
               

               Conread position:
               31-247
               

               Cow position:
               chrX:47246838-47246632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               135, 47
               

               Conread position:
               31-250
               

               Cow position:
               chrX:11455137-11454921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               70, 10
               

               Conread position:
               31-256
               

               Cow position:
               chrX:31515078-31515308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               54, 73
               

               Conread position:
               32-265
               

               Cow position:
               chrX:42855365-42855601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 52
               

               Conread position:
               32-267
               

               Cow position:
               chrX:44192533-44192299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               71, 36
               

               Conread position:
               32-271
               

               Cow position:
               chrX:16348658-16348422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               59, 145
               

               Conread position:
               32-271
               

               Cow position:
               chrX:20168468-20168706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               179
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               70, 84
               

               Conread position:
               32-271
               

               Cow position:
               chrX:45099035-45099277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               32-323
               

               Cow position:
               chrX:34837144-34836856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               130, 30
               

               Conread position:
               32-327
               

               Cow position:
               chrX:33654931-33654623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               220
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               39, 88
               

               Conread position:
               32-345
               

               Cow position:
               chrX:161323-161638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 67
               

               Conread position:
               32-347
               

               Cow position:
               chrX:25035469-25035141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               71, 89
               

               Conread position:
               33-243
               

               Cow position:
               chrX:48071072-48071282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               128, 87
               

               Conread position:
               33-267
               

               Cow position:
               chrX:21327817-21328058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               33-270
               

               Cow position:
               chrX:41271087-41270838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               33-271
               

               Cow position:
               chrX:34222625-34222863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               70, 190
               

               Conread position:
               33-329
               

               Cow position:
               chrX:33205053-33204771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               129, 66
               

               Conread position:
               34-334
               

               Cow position:
               chrX:41238439-41238135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 46
               

               Conread position:
               35-263
               

               Cow position:
               chrX:11318054-11317828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               67, 72
               

               Conread position:
               36-224
               

               Cow position:
               chrX:4296905-4296723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               125, 82
               

               Conread position:
               36-239
               

               Cow position:
               chrX:48195123-48194918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               36-239
               

               Cow position:
               chrX:48652806-48652604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               119, 48
               

               Conread position:
               36-270
               

               Cow position:
               chrX:29549633-29549402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               66, 150
               

               Conread position:
               36-271
               

               Cow position:
               chrX:23562549-23562781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 48
               

               Conread position:
               36-271
               

               Cow position:
               chrX:37129183-37129418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               67, 34
               

               Conread position:
               36-271
               

               Cow position:
               chrX:40680525-40680763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               180
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               36-327
               

               Cow position:
               chrX:20882023-20881741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               67, 48
               

               Conread position:
               36-333
               

               Cow position:
               chrX:6559531-6559230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               63, 57
               

               Conread position:
               36-334
               

               Cow position:
               chrX:12095859-12095544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               222
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               73, 86
               

               Conread position:
               38-252
               

               Cow position:
               chrX:19690145-19690345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               124, 36
               

               Conread position:
               38-260
               

               Cow position:
               chrX:13868619-13868841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               66, 78
               

               Conread position:
               38-263
               

               Cow position:
               chrX:23113194-23113425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               74, 33
               

               Conread position:
               38-334
               

               Cow position:
               chrX:27261104-27261418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               229
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               25, 29
               

               Conread position:
               39-322
               

               Cow position:
               chrX:41192625-41192904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               203
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               69, 42
               

               Conread position:
               40-269
               

               Cow position:
               chrX:43527428-43527655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               62, 77
               

               Conread position:
               41-266
               

               Cow position:
               chrX:16575042-16575256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               120, 75
               

               Conread position:
               41-322
               

               Cow position:
               chrX:15233345-15233073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               73, 28
               

               Conread position:
               42-261
               

               Cow position:
               chrX:36514974-36514753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               61, 84
               

               Conread position:
               42-296
               

               Cow position:
               chrX:39220000-39220254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               120, 36
               

               Conread position:
               43-260
               

               Cow position:
               chrX:46771038-46770825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               118, 45
               

               Conread position:
               43-267
               

               Cow position:
               chrX:45884054-45883826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               35, 83
               

               Conread position:
               43-271
               

               Cow position:
               chrX:22115396-22115167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               14, 79
               

               Conread position:
               43-345
               

               Cow position:
               chrX:36866092-36866413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               52, 74
               

               Conread position:
               44-270
               

               Cow position:
               chrX:5900391-5900610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               59, 72
               

               Conread position:
               44-271
               

               Cow position:
               chrX:4515606-4515840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               58, 77
               

               Conread position:
               44-334
               

               Cow position:
               chrX:4153113-4152817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               209
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               45-319
               

               Cow position:
               chrX:3130498-3130771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               58, 41
               

               Conread position:
               47-319
               

               Cow position:
               chrX:126694-126968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               56, 116
               

               Conread position:
               48-322
               

               Cow position:
               chrX:38208617-38208339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               200, 70
               

               Conread position:
               49-329
               

               Cow position:
               chrX:1088209-1087926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               46, 35
               

               Conread position:
               50-247
               

               Cow position:
               chrX:19965474-19965271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               38, 74
               

               Conread position:
               50-296
               

               Cow position:
               chrX:25036915-25037160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               53, 66
               

               Conread position:
               51-271
               

               Cow position:
               chrX:22915107-22914891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               112, 36
               

               Conread position:
               53-264
               

               Cow position:
               chrX:19097291-19097077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               109, 62
               

               Conread position:
               56-254
               

               Cow position:
               chrX:12082391-12082192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               57, 135
               

               Conread position:
               57-235
               

               Cow position:
               chrX:43973479-43973660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               45, 83
               

               Conread position:
               58-329
               

               Cow position:
               chrX:12437334-12437061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               37, 68
               

               Conread position:
               59-297
               

               Cow position:
               chrX:43426228-43426465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               13, 203
               

               Conread position:
               59-322
               

               Cow position:
               chrX:30840481-30840756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               66, 29
               

               Conread position:
               60-254
               

               Cow position:
               chrX:23561799-23561990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               43, 56
               

               Conread position:
               60-271
               

               Cow position:
               chrX:4109128-4109333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               43, 56
               

               Conread position:
               62-262
               

               Cow position:
               chrX:46429881-46429679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               6, 19
               

               Conread position:
               62-310
               

               Cow position:
               chrX:27511367-27511624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               35, 62
               

               Conread position:
               62-349
               

               Cow position:
               chrX:39352720-39353014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               41, 133
               

               Conread position:
               64-322
               

               Cow position:
               chrX:1360028-1360297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               97, 44
               

               Conread position:
               65-271
               

               Cow position:
               chrX:31627038-31626828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               55, 128
               

               Conread position:
               65-271
               

               Cow position:
               chrX:40108573-40108369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               46, 31
               

               Conread position:
               65-367
               

               Cow position:
               chrX:19469563-19469255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               97, 51
               

               Conread position:
               66-255
               

               Cow position:
               chrX:42499105-42498914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               36, 50
               

               Conread position:
               66-266
               

               Cow position:
               chrX:32623511-32623714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               38, 184
               

               Conread position:
               66-271
               

               Cow position:
               chrX:32978133-32977937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               37, 54
               

               Conread position:
               70-271
               

               Cow position:
               chrX:22393038-22392836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               32, 178
               

               Conread position:
               71-265
               

               Cow position:
               chrX:44339375-44339182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               32, 111
               

               Conread position:
               71-271
               

               Cow position:
               chrX:35985767-35985966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               31, 96
               

               Conread position:
               71-274
               

               Cow position:
               chrX:29408076-29407869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               72-253
               

               Cow position:
               chrX:29115661-29115837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               31, 44
               

               Conread position:
               73-266
               

               Cow position:
               chrX:19943286-19943092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               30, 131
               

               Conread position:
               77-271
               

               Cow position:
               chrX:6599829-6599633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               77-347
               

               Cow position:
               chrX:2523723-2523461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               87, 32
               

               Conread position:
               81-322
               

               Cow position:
               chrX:27306411-27306654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               14, 203
               

               Conread position:
               81-347
               

               Cow position:
               chrX:19394511-19394795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               82-271
               

               Cow position:
               chrX:18964865-18964679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               21, 80
               

               Conread position:
               82-271
               

               Cow position:
               chrX:40532084-40531894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               22, 53
               

               Conread position:
               83-262
               

               Cow position:
               chrX:29553246-29553425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               78, 40
               

               Conread position:
               84-334
               

               Cow position:
               chrX:48558709-48558973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               19, 32
               

               Conread position:
               84-350
               

               Cow position:
               chrX:42893879-42894166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               215
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               88-291
               

               Cow position:
               chrX:27413476-27413682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               21, 40
               

               Conread position:
               93-334
               

               Cow position:
               chrX:4559707-4559961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               6, 70
               

               Conread position:
               94-262
               

               Cow position:
               chrX:20743573-20743744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               101-262
               

               Cow position:
               chrX:10305368-10305211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               25, 13
               

               Conread position:
               104-326
               

               Cow position:
               chrX:42282559-42282796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               53, 26
               

               Conread position:
               105-269
               

               Cow position:
               chrX:23498693-23498533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               59, 20
               

               Conread position:
               105-271
               

               Cow position:
               chrX:4328202-4328035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               20, 138
               

               Conread position:
               105-336
               

               Cow position:
               chrX:27276675-27276906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               18, 158
               

               Conread position:
               108-271
               

               Cow position:
               chrX:1719100-1719264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               108-271
               

               Cow position:
               chrX:34420719-34420883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               117-275
               

               Cow position:
               chrX:1337285-1337139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               120-271
               

               Cow position:
               chrX:38301807-38301958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               42, 8
               

               Conread position:
               120-272
               

               Cow position:
               chrX:29501884-29501734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               121-238
               

               Cow position:
               chrX:6213868-6213986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               121-266
               

               Cow position:
               chrX:43008607-43008753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               21, 13
               

               Conread position:
               121-329
               

               Cow position:
               chrX:31745006-31744793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               37, 5
               

               Conread position:
               122-263
               

               Cow position:
               chrX:25328616-25328474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               105
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               122-263
               

               Cow position:
               chrX:25788906-25788763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               122-271
               

               Cow position:
               chrX:23188781-23188635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               40, 58
               

               Conread position:
               122-322
               

               Cow position:
               chrX:3806681-3806893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               168
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               122-329
               

               Cow position:
               chrX:4466966-4467173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               40, 135
               

               Conread position:
               122-334
               

               Cow position:
               chrX:27668959-27668735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               38, 181
               

               Conread position:
               122-335
               

               Cow position:
               chrX:14986152-14985934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               120, 39
               

               Conread position:
               122-346
               

               Cow position:
               chrX:11763002-11762771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               176
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               123-270
               

               Cow position:
               chrX:29478724-29478871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               39, 75
               

               Conread position:
               123-270
               

               Cow position:
               chrX:31829461-31829313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               123-271
               

               Cow position:
               chrX:17956693-17956839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               123-271
               

               Cow position:
               chrX:18046401-18046545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               39, 57
               

               Conread position:
               123-271
               

               Cow position:
               chrX:25411907-25412054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               39, 118
               

               Conread position:
               123-271
               

               Cow position:
               chrX:35658800-35658945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               39, 16
               

               Conread position:
               123-271
               

               Cow position:
               chrX:38587843-38587694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               123-297
               

               Cow position:
               chrX:26205448-26205264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               39, 110
               

               Conread position:
               123-297
               

               Cow position:
               chrX:28923042-28923210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               142, 34
               

               Conread position:
               123-313
               

               Cow position:
               chrX:20678138-20677941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               140, 38
               

               Conread position:
               123-318
               

               Cow position:
               chrX:35759936-35759745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               41, 145
               

               Conread position:
               123-322
               

               Cow position:
               chrX:4645913-4645699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               39, 113
               

               Conread position:
               123-322
               

               Cow position:
               chrX:42432514-42432299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               39, 84
               

               Conread position:
               123-324
               

               Cow position:
               chrX:46070172-46069968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               24, 141
               

               Conread position:
               123-329
               

               Cow position:
               chrX:11653764-11653989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               123-329
               

               Cow position:
               chrX:27075051-27074829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               123-329
               

               Cow position:
               chrX:35278330-35278532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               39, 7
               

               Conread position:
               123-329
               

               Cow position:
               chrX:38722121-38722319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               35, 147
               

               Conread position:
               123-330
               

               Cow position:
               chrX:35275986-35276209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               31, 39
               

               Conread position:
               123-350
               

               Cow position:
               chrX:42331278-42331516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               39, 189
               

               Conread position:
               123-354
               

               Cow position:
               chrX:4289442-4289681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               124-256
               

               Cow position:
               chrX:16830225-16830354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               103
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               124-264
               

               Cow position:
               chrX:29733591-29733450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               124-271
               

               Cow position:
               chrX:21665240-21665091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               124-271
               

               Cow position:
               chrX:32574318-32574466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               108
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               124-322
               

               Cow position:
               chrX:16836285-16836079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               38, 64
               

               Conread position:
               124-334
               

               Cow position:
               chrX:32910105-32910324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               39, 94
               

               Conread position:
               124-334
               

               Cow position:
               chrX:40336912-40337138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               38, 66
               

               Conread position:
               124-342
               

               Cow position:
               chrX:2935958-2936187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               38, 219
               

               Conread position:
               124-349
               

               Cow position:
               chrX:17966342-17966567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               26, 39
               

               Conread position:
               125-271
               

               Cow position:
               chrX:6223126-6222978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               125-271
               

               Cow position:
               chrX:32318307-32318455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               109
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               125-322
               

               Cow position:
               chrX:46793744-46793535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               126-271
               

               Cow position:
               chrX:39180230-39180085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               37, 92
               

               Conread position:
               126-358
               

               Cow position:
               chrX:17524381-17524133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               36, 110
               

               Conread position:
               128-250
               

               Cow position:
               chrX:37665696-37665819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               101
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               128-271
               

               Cow position:
               chrX:40648898-40649044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               109
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               128-330
               

               Cow position:
               chrX:20340638-20340435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               32, 131
               

               Conread position:
               128-346
               

               Cow position:
               chrX:35285178-35285413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               128-378
               

               Cow position:
               chrX:19018826-19018559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               34, 242
               

               Conread position:
               129-329
               

               Cow position:
               chrX:1122537-1122325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               33, 51
               

               Conread position:
               129-329
               

               Cow position:
               chrX:42450008-42449791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               130-345
               

               Cow position:
               chrX:24054678-24054899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               31, 140
               
UCSC Genome Browser
               Conread position:
               130-349
               

               Cow position:
               chrX:19717529-19717759 (view  custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               32, 17
               
UCSC Genome Browser
               
               
               
Conread position: 131-271

               
               
               
Cow position: chrX:25459726-25459580 (view  custom track)

               
               
               
Alignm length: 148

               
               
               
Alignm identity: 120

               
               
               
Alignm E-value: 2e-28

               
               
               
Alignm gaps (pig, cow): 31, 58
UCSC Genome Browser
               
               
               
Conread position: 131-318

               
               
               
Cow position: chrX:46068751-46068552 (view  custom track)

               
               
               
Alignm length: 200

               
               
               
Alignm identity: 149

               
               
               
Alignm E-value: 2e-29

               
               
               
Alignm gaps (pig, cow): 14, 0

               
               
               Conread position:131-329
               
               
               Cow position:chrX:16324006-16323793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:132-321
               
               
               Cow position:chrX:42836190-42836395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:132-347
               
               
               Cow position:chrX:16984651-16984875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:133-270
               
               
               Cow position:chrX:27667443-27667573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:134-321
               
               
               Cow position:chrX:46700836-46700656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):28, 44

               
               
               Conread position:136-265
               
               
               Cow position:chrX:753165-753299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:136-270
               
               
               Cow position:chrX:47342129-47342263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 42

               
               
               Conread position:137-271
               
               
               Cow position:chrX:23266429-23266565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:137-323
               
               
               Cow position:chrX:30824001-30824201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:137-346
               
               
               Cow position:chrX:23088870-23089075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):127, 50

               
               
               Conread position:139-346
               
               
               Cow position:chrX:16763905-16763691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):125, 18

               
               
               Conread position:139-346
               
               
               Cow position:chrX:32747744-32747959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):14, 172

               
               
               Conread position:140-268
               
               
               Cow position:chrX:34508561-34508690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:140-271
               
               
               Cow position:chrX:33151964-33151839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:141-271
               
               
               Cow position:chrX:20345471-20345599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:141-329
               
               
               Cow position:chrX:19761772-19761971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:141-334
               
               
               Cow position:chrX:20583684-20583887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 174

               
               
               Conread position:142-242
               
               
               Cow position:chrX:25210948-25211048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 36

               
               
               Conread position:142-266
               
               
               Cow position:chrX:10075992-10076115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:142-276
               
               
               Cow position:chrX:18637508-18637647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:142-310
               
               
               Cow position:chrX:3860609-3860446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:142-322
               
               
               Cow position:chrX:41810149-41809960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:142-329
               
               
               Cow position:chrX:907965-908163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:142-329
               
               
               Cow position:chrX:32877356-32877157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 171

               
               
               Conread position:142-334
               
               
               Cow position:chrX:5026275-5026478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:145-271
               
               
               Cow position:chrX:27296506-27296371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:145-271
               
               
               Cow position:chrX:40355057-40355180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:147-271
               
               
               Cow position:chrX:37062561-37062435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:147-347
               
               
               Cow position:chrX:32866899-32867110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:149-322
               
               
               Cow position:chrX:23359085-23358902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:150-322
               
               
               Cow position:chrX:42539587-42539762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 78

               
               
               Conread position:151-329
               
               
               Cow position:chrX:46909843-46910030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 162

               
               
               Conread position:152-271
               
               
               Cow position:chrX:2314590-2314470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:152-271
               
               
               Cow position:chrX:29563053-29562937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:155-267
               
               
               Cow position:chrX:17908116-17908005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:155-271
               
               
               Cow position:chrX:23860962-23860844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:155-329
               
               
               Cow position:chrX:40116516-40116690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):109, 8

               
               
               Conread position:155-333
               
               
               Cow position:chrX:37749951-37749765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:155-342
               
               
               Cow position:chrX:48822310-48822105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:155-345
               
               
               Cow position:chrX:2551123-2551314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):7, 114

               
               
               Conread position:156-329
               
               
               Cow position:chrX:12783-12965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:157-347
               
               
               Cow position:chrX:11454220-11454415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):5, 60

               
               
               Conread position:161-322
               
               
               Cow position:chrX:44123294-44123464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:161-365
               
               
               Cow position:chrX:6676865-6677064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:162-349
               
               
               Cow position:chrX:27415540-27415346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 136

               
               
               Conread position:165-334
               
               
               Cow position:chrX:16556174-16555996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:165-344
               
               
               Cow position:chrX:37752063-37751874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:166-322
               
               
               Cow position:chrX:9954549-9954705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:166-323
               
               
               Cow position:chrX:41414767-41414926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:166-329
               
               
               Cow position:chrX:42875256-42875431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:167-271
               
               
               Cow position:chrX:28876555-28876658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:168-262
               
               
               Cow position:chrX:30831287-30831193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:168-329
               
               
               Cow position:chrX:23108087-23108249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):112, 103

               
               
               Conread position:171-271
               
               
               Cow position:chrX:25282989-25282890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:171-339
               
               
               Cow position:chrX:25925593-25925424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):111, 137

               
               
               Conread position:172-268
               
               
               Cow position:chrX:24547451-24547355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-271
               
               
               Cow position:chrX:40543469-40543374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:179-304
               
               
               Cow position:chrX:26692268-26692392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:189-355
               
               
               Cow position:chrX:25232064-25232229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:193-330
               
               
               Cow position:chrX:25420402-25420547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:205-327
               
               
               Cow position:chrX:20710255-20710378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 61
Show alignments to all cow chromosomes.
Conread position:	1-124
Cow position:	chrX:35388024-35387900 (view UCSC Genome Browser custom track)
Alignm length:	125
Alignm identity:	96
Alignm E-value:	8e-22
Alignm gaps (pig, cow):	35, 0
Conread position:	1-157
Cow position:	chrX:38439356-38439515 (view UCSC Genome Browser custom track)
Alignm length:	160
Alignm identity:	129
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	35, 0
Conread position:	1-159
Cow position:	chrX:9997457-9997298 (view UCSC Genome Browser custom track)
Alignm length:	162
Alignm identity:	120
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	35, 122
Conread position:	1-161
Cow position:	chrX:14003763-14003608 (view UCSC Genome Browser custom track)
Alignm length:	162
Alignm identity:	119
Alignm E-value:	3e-22
Alignm gaps (pig, cow):	35, 111
Conread position:	1-172
Cow position:	chrX:19015316-19015487 (view UCSC Genome Browser custom track)
Alignm length:	176
Alignm identity:	128
Alignm E-value:	8e-23
Alignm gaps (pig, cow):	35, 89
Conread position:	1-174
Cow position:	chrX:42874859-42875035 (view UCSC Genome Browser custom track)
Alignm length:	181
Alignm identity:	144
Alignm E-value:	9e-34
Alignm gaps (pig, cow):	35, 123
Conread position:	1-177
Cow position:	chrX:36961517-36961696 (view UCSC Genome Browser custom track)
Alignm length:	183
Alignm identity:	144
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	32, 116
Conread position:	1-185
Cow position:	chrX:13785485-13785297 (view UCSC Genome Browser custom track)
Alignm length:	189
Alignm identity:	136
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	35, 0
Conread position:	1-191
Cow position:	chrX:26876005-26875812 (view UCSC Genome Browser custom track)
Alignm length:	195
Alignm identity:	139
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	35, 137
Conread position:	1-198
Cow position:	chrX:11589710-11589512 (view UCSC Genome Browser custom track)
Alignm length:	202
Alignm identity:	154
Alignm E-value:	1e-35
Alignm gaps (pig, cow):	37, 117
Conread position:	1-201
Cow position:	chrX:24105504-24105703 (view UCSC Genome Browser custom track)
Alignm length:	205
Alignm identity:	147
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	35, 68
Conread position:	1-203
Cow position:	chrX:19003178-19003374 (view UCSC Genome Browser custom track)
Alignm length:	205
Alignm identity:	152
Alignm E-value:	2e-30
Alignm gaps (pig, cow):	35, 112
Conread position:	1-212
Cow position:	chrX:12405509-12405291 (view UCSC Genome Browser custom track)
Alignm length:	219
Alignm identity:	160
Alignm E-value:	3e-34
Alignm gaps (pig, cow):	42, 0
Conread position:	1-215
Cow position:	chrX:2467761-2467977 (view UCSC Genome Browser custom track)
Alignm length:	221
Alignm identity:	158
Alignm E-value:	5e-28
Alignm gaps (pig, cow):	32, 95
Conread position:	1-216
Cow position:	chrX:45993101-45993324 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	162
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	21, 120
Conread position:	1-235
Cow position:	chrX:7509020-7509252 (view UCSC Genome Browser custom track)
Alignm length:	238
Alignm identity:	163
Alignm E-value:	4e-26
Alignm gaps (pig, cow):	34, 125
Conread position:	1-239
Cow position:	chrX:45403952-45403708 (view UCSC Genome Browser custom track)
Alignm length:	246
Alignm identity:	168
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	37, 138
Conread position:	1-242
Cow position:	chrX:43049226-43049451 (view UCSC Genome Browser custom track)
Alignm length:	245
Alignm identity:	174
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	32, 113
Conread position:	1-247
Cow position:	chrX:40809564-40809818 (view UCSC Genome Browser custom track)
Alignm length:	255
Alignm identity:	169
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	37, 0
Conread position:	1-248
Cow position:	chrX:47484390-47484139 (view UCSC Genome Browser custom track)
Alignm length:	254
Alignm identity:	170
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	32, 128