Cow genome map

Conread name: rtra08_o16r1.y1

Conread position: 172-414
Cow position: chr25:448675-448427 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 17, 0

Conread position: 183-411
Cow position: chr25:33664215-33663987 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 16, 172

Conread position: 208-410
Cow position: chr25:18294606-18294401 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 125

Conread position: 208-413
Cow position: chr25:9023353-9023552 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 79

Conread position: 208-414
Cow position: chr25:2110791-2110994 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 113

Conread position: 208-414
Cow position: chr25:5514717-5514928 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 12

Conread position: 208-414
Cow position: chr25:6464321-6464114 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 169
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 55, 124

Conread position: 208-414
Cow position: chr25:18490780-18490992 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 61, 0

Conread position: 208-414
Cow position: chr25:20060320-20060109 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 172
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 55, 15

Conread position: 208-414
Cow position: chr25:23389564-23389362 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 113, 15

Conread position: 208-414
Cow position: chr25:27621790-27622006 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 166
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 33, 84

Conread position: 208-414
Cow position: chr25:30319741-30319526 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 208-417
Cow position: chr25:15368384-15368599 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 42, 197

Conread position: 209-412
Cow position: chr25:10137816-10138012 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 14

Conread position: 209-412
Cow position: chr25:17658324-17658529 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 93

Conread position: 209-414
Cow position: chr25:1735601-1735396 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 27

Conread position: 209-414
Cow position: chr25:12097552-12097759 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 19

Conread position: 209-414
Cow position: chr25:13569458-13569253 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 160
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 59, 143

Conread position: 209-414
Cow position: chr25:14791465-14791671 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 14

Conread position: 209-414
Cow position: chr25:21950835-21951045 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 54, 0

Conread position: 209-414
Cow position: chr25:26087224-26087438 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 209-414
Cow position: chr25:26111991-26112185 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 173, 37

Conread position: 209-414
Cow position: chr25:26654616-26654827 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 171
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 123, 147

Conread position: 209-414
Cow position: chr25:33839097-33839297 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 60, 126

Conread position: 209-414
Cow position: chr25:36761815-36762024 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 0

Conread position: 209-414
Cow position: chr25:36779205-36779414 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 119, 84

Conread position: 209-415
Cow position: chr25:7216537-7216749 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 209-417
Cow position: chr25:12204179-12204390 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 144

Conread position: 210-414
Cow position: chr25:9957324-9957122 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 33, 124

Conread position: 210-414
Cow position: chr25:10366042-10365833 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 39

Conread position: 210-414
Cow position: chr25:11139350-11139568 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 22, 53

Conread position: 210-414
Cow position: chr25:16866942-16867147 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 69

Conread position: 210-414
Cow position: chr25:16922082-16921874 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 43

Conread position: 210-414
Cow position: chr25:22530997-22531202 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 113

Conread position: 210-414
Cow position: chr25:27821120-27821333 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 31, 0

Conread position: 210-414
Cow position: chr25:31733026-31732816 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 162

Conread position: 210-415
Cow position: chr25:17354089-17354295 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 33, 126

Conread position: 210-417
Cow position: chr25:16064607-16064810 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 169
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 174, 131

Conread position: 214-414
Cow position: chr25:8347223-8347426 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 162
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 0

Conread position: 214-416
Cow position: chr25:36119915-36120120 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 146

Conread position: 221-412
Cow position: chr25:787990-788180 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 42, 78

Conread position: 221-414
Cow position: chr25:1837961-1838155 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 62

Conread position: 222-414
Cow position: chr25:35607997-35607804 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 56, 36

Conread position: 225-414
Cow position: chr25:36081600-36081794 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 158
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 116, 23

Conread position: 227-414
Cow position: chr25:14512843-14513028 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 151
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 157, 106

Conread position: 229-412
Cow position: chr25:7581697-7581509 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 14

Conread position: 229-413
Cow position: chr25:22297288-22297102 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 149
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 40, 98

Conread position: 231-413
Cow position: chr25:28188217-28188030 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 152
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 122, 0

Conread position: 232-414
Cow position: chr25:14196587-14196777 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 32, 0

Conread position: 232-414
Cow position: chr25:21266738-21266927 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 153
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 35, 0

Conread position: 233-413
Cow position: chr25:22203957-22203768 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 156
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 30, 0

Conread position: 233-414
Cow position: chr25:6886244-6886055 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 148
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 30, 0

Conread position: 233-414
Cow position: chr25:12824282-12824102 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 151
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 8, 106

Conread position: 234-414
Cow position: chr25:40407735-40407553 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 150, 36

Conread position: 236-413
Cow position: chr25:24168162-24167985 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 103, 35

Conread position: 236-413
Cow position: chr25:36535696-36535520 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 144
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 148, 32

Conread position: 236-414
Cow position: chr25:17712270-17712454 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 153
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 29, 0

Conread position: 236-414
Cow position: chr25:18075405-18075592 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 150
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 30, 47

Conread position: 237-414
Cow position: chr25:17566324-17566505 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 146
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 32, 105

Conread position: 237-414
Cow position: chr25:20007877-20008052 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 44, 93

Conread position: 237-414
Cow position: chr25:26058322-26058506 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 32, 136

Conread position: 238-414
Cow position: chr25:18988118-18988299 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 154
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 101, 21

Conread position: 238-414
Cow position: chr25:26700778-26700954 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 156
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 32

Conread position: 239-409
Cow position: chr25:24452429-24452255 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 148
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 67, 43

Conread position: 239-414
Cow position: chr25:35612562-35612386 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 146
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 29, 92

Conread position: 239-414
Cow position: chr25:41366429-41366251 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 240-415
Cow position: chr25:433336-433155 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 122, 28

Conread position: 241-412
Cow position: chr25:8918537-8918356 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 149
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 28, 0

Conread position: 241-414
Cow position: chr25:24008437-24008257 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 145
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 9, 0

Conread position: 242-414
Cow position: chr25:16001779-16001607 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 146
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 26, 103

Conread position: 243-414
Cow position: chr25:15254588-15254416 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 139
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 26, 162

Conread position: 246-414
Cow position: chr25:36026753-36026926 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 146
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 17, 0

Conread position: 246-415
Cow position: chr25:35344784-35344949 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 143
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 22, 139

Conread position: 247-414
Cow position: chr25:4002543-4002718 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 21, 0

Conread position: 250-412
Cow position: chr25:20020237-20020077 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 14, 88

Conread position: 250-414
Cow position: chr25:20211336-20211163 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 254-412
Cow position: chr25:11666410-11666570 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 9, 78

Conread position: 259-414
Cow position: chr25:12840958-12840805 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 69, 101

Conread position: 261-414
Cow position: chr25:21289102-21289264 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 134
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 73, 0

Conread position: 262-410
Cow position: chr25:15377096-15377241 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 128
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 123, 66

Conread position: 262-414
Cow position: chr25:7329307-7329465 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 134
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 72, 0

Conread position: 262-414
Cow position: chr25:38425128-38425279 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 116

Conread position: 263-414
Cow position: chr25:61421-61578 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 134
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 124, 0

Conread position: 265-414
Cow position: chr25:6256172-6256019 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 129
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 122, 41

Conread position: 265-414
Cow position: chr25:12081542-12081403 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 115, 26

Conread position: 269-414
Cow position: chr25:10218281-10218130 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 273-414
Cow position: chr25:25861586-25861440 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 276-414
Cow position: chr25:2595954-2596103 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 284-414
Cow position: chr25:16389507-16389373 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 103, 0

Conread position: 285-412
Cow position: chr25:34768934-34768810 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 108
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 99, 75

Conread position: 291-412
Cow position: chr25:26270142-26270018 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 110
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 93, 0

Conread position: 295-414
Cow position: chr25:17704545-17704671 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 295-414
Cow position: chr25:20133520-20133395 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 298-414
Cow position: chr25:27801089-27801204 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 75

Conread position: 303-414
Cow position: chr25:21042191-21042299 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 32

Conread position: 304-414
Cow position: chr25:12755686-12755573 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 97
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 80, 22

Conread position: 306-414
Cow position: chr25:35110323-35110208 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 310-414
Cow position: chr25:18905692-18905803 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 314-415
Cow position: chr25:18894908-18894801 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 0

Show alignments to all cow chromosomes.