Cow genome map

Conread name: rtra08_o16r1.y1

Conread position: 174-414
Cow position:
Alignm length: 248
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 238

Conread position: 186-414
Cow position:
Alignm length: 235
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 24

Conread position: 208-410
Cow position:
Alignm length: 213
Alignm identity: 166
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 23, 0

Conread position: 208-412
Cow position:
Alignm length: 218
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 124, 61

Conread position: 208-412
Cow position:
Alignm length: 209
Alignm identity: 168
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 55, 15

Conread position: 208-413
Cow position:
Alignm length: 216
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 208-413
Cow position:
Alignm length: 210
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 160

Conread position: 208-413
Cow position:
Alignm length: 210
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 15

Conread position: 208-413
Cow position:
Alignm length: 210
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 0

Conread position: 208-414
Cow position:
Alignm length: 208
Alignm identity: 153
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 140, 67

Conread position: 208-414
Cow position:
Alignm length: 214
Alignm identity: 170
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 40, 45

Conread position: 208-414
Cow position:
Alignm length: 217
Alignm identity: 168
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 25, 0

Conread position: 208-414
Cow position:
Alignm length: 213
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 148

Conread position: 208-414
Cow position:
Alignm length: 211
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 79

Conread position: 208-414
Cow position:
Alignm length: 216
Alignm identity: 167
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 123, 60

Conread position: 208-414
Cow position:
Alignm length: 211
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 40

Conread position: 208-414
Cow position:
Alignm length: 210
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 12

Conread position: 208-414
Cow position:
Alignm length: 215
Alignm identity: 169
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 55, 0

Conread position: 208-414
Cow position:
Alignm length: 209
Alignm identity: 165
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 59, 86

Conread position: 208-414
Cow position:
Alignm length: 209
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 0

Conread position: 208-414
Cow position:
Alignm length: 213
Alignm identity: 166
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 60, 0

Conread position: 208-414
Cow position:
Alignm length: 212
Alignm identity: 167
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 60, 126

Conread position: 208-414
Cow position:
Alignm length: 210
Alignm identity: 165
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 55, 13

Conread position: 208-414
Cow position:
Alignm length: 214
Alignm identity: 161
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 126, 28

Conread position: 208-414
Cow position:
Alignm length: 218
Alignm identity: 159
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 208-415
Cow position:
Alignm length: 218
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 208-415
Cow position:
Alignm length: 213
Alignm identity: 163
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 164, 37

Conread position: 208-415
Cow position:
Alignm length: 223
Alignm identity: 174
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 56, 15

Conread position: 209-412
Cow position:
Alignm length: 211
Alignm identity: 160
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 54, 14

Conread position: 209-413
Cow position:
Alignm length: 211
Alignm identity: 161
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 54, 28

Conread position: 209-414
Cow position:
Alignm length: 219
Alignm identity: 172
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 54, 14

Conread position: 209-414
Cow position:
Alignm length: 214
Alignm identity: 169
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 59, 68

Conread position: 209-414
Cow position:
Alignm length: 208
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 169

Conread position: 209-414
Cow position:
Alignm length: 222
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 53, 145

Conread position: 209-414
Cow position:
Alignm length: 207
Alignm identity: 161
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 184, 77

Conread position: 209-414
Cow position:
Alignm length: 209
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 32

Conread position: 209-414
Cow position:
Alignm length: 209
Alignm identity: 168
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 12, 35

Conread position: 209-414
Cow position:
Alignm length: 208
Alignm identity: 162
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 171, 14

Conread position: 209-414
Cow position:
Alignm length: 214
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 8

Conread position: 209-414
Cow position:
Alignm length: 213
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 91

Conread position: 209-414
Cow position:
Alignm length: 213
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 209-414
Cow position:
Alignm length: 211
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 131

Conread position: 209-414
Cow position:
Alignm length: 213
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 11

Conread position: 209-414
Cow position:
Alignm length: 214
Alignm identity: 162
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 65, 21

Conread position: 209-414
Cow position:
Alignm length: 215
Alignm identity: 166
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 60, 0

Conread position: 209-414
Cow position:
Alignm length: 209
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 56

Conread position: 209-414
Cow position:
Alignm length: 214
Alignm identity: 166
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 125, 51

Conread position: 210-414
Cow position:
Alignm length: 210
Alignm identity: 164
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 14, 114

Conread position: 210-415
Cow position:
Alignm length: 214
Alignm identity: 169
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 56, 13

Conread position: 210-417
Cow position:
Alignm length: 214
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 43

Conread position: 211-413
Cow position:
Alignm length: 207
Alignm identity: 156
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 123, 9

Conread position: 211-414
Cow position:
Alignm length: 209
Alignm identity: 161
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 13, 66

Conread position: 211-414
Cow position:
Alignm length: 213
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 211-414
Cow position:
Alignm length: 208
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 30

Conread position: 212-413
Cow position:
Alignm length: 208
Alignm identity: 169
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 122, 47

Conread position: 212-414
Cow position:
Alignm length: 213
Alignm identity: 166
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 31, 0

Conread position: 215-414
Cow position:
Alignm length: 207
Alignm identity: 164
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 28, 92

Conread position: 215-414
Cow position:
Alignm length: 203
Alignm identity: 161
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 150

Conread position: 217-413
Cow position:
Alignm length: 199
Alignm identity: 151
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 7, 80

Conread position: 217-414
Cow position:
Alignm length: 209
Alignm identity: 169
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 47, 24

Conread position: 219-414
Cow position:
Alignm length: 203
Alignm identity: 158
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 44, 151

Conread position: 221-412
Cow position:
Alignm length: 195
Alignm identity: 159
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 163, 12

Conread position: 221-413
Cow position:
Alignm length: 199
Alignm identity: 154
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 47, 0

Conread position: 221-414
Cow position:
Alignm length: 196
Alignm identity: 142
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 165, 57

Conread position: 224-414
Cow position:
Alignm length: 202
Alignm identity: 164
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 44, 13

Conread position: 226-414
Cow position:
Alignm length: 197
Alignm identity: 159
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 43, 136

Conread position: 227-414
Cow position:
Alignm length: 193
Alignm identity: 157
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 40, 104

Conread position: 230-413
Cow position:
Alignm length: 184
Alignm identity: 136
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 230-414
Cow position:
Alignm length: 186
Alignm identity: 146
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 153, 142

Conread position: 231-414
Cow position:
Alignm length: 192
Alignm identity: 153
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 37, 7

Conread position: 232-413
Cow position:
Alignm length: 197
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 92

Conread position: 232-414
Cow position:
Alignm length: 188
Alignm identity: 154
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 148, 36

Conread position: 232-414
Cow position:
Alignm length: 183
Alignm identity: 149
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 151, 0

Conread position: 232-414
Cow position:
Alignm length: 186
Alignm identity: 158
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 34

Conread position: 232-414
Cow position:
Alignm length: 186
Alignm identity: 156
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 36, 89

Conread position: 232-414
Cow position:
Alignm length: 199
Alignm identity: 156
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 28, 0

Conread position: 236-412
Cow position:
Alignm length: 188
Alignm identity: 153
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 28, 0

Conread position: 236-414
Cow position:
Alignm length: 186
Alignm identity: 150
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 28, 0

Conread position: 236-414
Cow position:
Alignm length: 185
Alignm identity: 153
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 27, 47

Conread position: 236-414
Cow position:
Alignm length: 184
Alignm identity: 150
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 27, 106

Conread position: 236-414
Cow position:
Alignm length: 179
Alignm identity: 153
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 236-414
Cow position:
Alignm length: 180
Alignm identity: 141
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 29, 87

Conread position: 237-414
Cow position:
Alignm length: 185
Alignm identity: 149
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 27, 0

Conread position: 237-415
Cow position:
Alignm length: 181
Alignm identity: 147
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 150, 108

Conread position: 238-408
Cow position:
Alignm length: 176
Alignm identity: 137
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 101, 27

Conread position: 239-413
Cow position:
Alignm length: 176
Alignm identity: 141
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 24, 69

Conread position: 239-414
Cow position:
Alignm length: 179
Alignm identity: 144
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 32, 50

Conread position: 239-415
Cow position:
Alignm length: 180
Alignm identity: 133
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 25, 79

Conread position: 240-414
Cow position:
Alignm length: 178
Alignm identity: 136
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 29, 0

Conread position: 241-414
Cow position:
Alignm length: 178
Alignm identity: 154
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 150

Conread position: 242-414
Cow position:
Alignm length: 180
Alignm identity: 149
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 92, 0

Conread position: 242-414
Cow position:
Alignm length: 176
Alignm identity: 138
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 145, 17

Conread position: 242-415
Cow position:
Alignm length: 175
Alignm identity: 135
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 26, 108

Conread position: 243-414
Cow position:
Alignm length: 178
Alignm identity: 146
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 23, 0

Conread position: 243-414
Cow position:
Alignm length: 174
Alignm identity: 146
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 142, 82

Conread position: 243-415
Cow position:
Alignm length: 174
Alignm identity: 132
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 26, 61

Conread position: 246-414
Cow position:
Alignm length: 174
Alignm identity: 138
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 21, 93

Conread position: 252-414
Cow position:
Alignm length: 173
Alignm identity: 139
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 11, 0

Conread position: 256-414
Cow position:
Alignm length: 167
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 258-414
Cow position:
Alignm length: 159
Alignm identity: 135
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 122, 93

Conread position: 261-414
Cow position:
Alignm length: 157
Alignm identity: 127
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 126, 21

Conread position: 262-412
Cow position:
Alignm length: 159
Alignm identity: 121
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 77, 18

Conread position: 262-414
Cow position:
Alignm length: 156
Alignm identity: 125
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 122, 75

Conread position: 264-414
Cow position:
Alignm length: 159
Alignm identity: 122
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 265-413
Cow position:
Alignm length: 152
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 66

Conread position: 268-414
Cow position:
Alignm length: 156
Alignm identity: 126
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 112, 54

Conread position: 268-414
Cow position:
Alignm length: 149
Alignm identity: 117
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 88, 84

Conread position: 270-414
Cow position:
Alignm length: 154
Alignm identity: 119
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 64, 0

Conread position: 277-413
Cow position:
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 75

Conread position: 282-414
Cow position:
Alignm length: 139
Alignm identity: 113
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 54, 0

Conread position: 288-412
Cow position:
Alignm length: 130
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 64

Conread position: 292-414
Cow position:
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 293-409
Cow position:
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 91, 0

Conread position: 300-410
Cow position:
Alignm length: 113
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 84, 51

Conread position: 300-414
Cow position:
Alignm length: 127
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 302-414
Cow position:
Alignm length: 116
Alignm identity: 98
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 304-414
Cow position:
Alignm length: 118
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 30, 67

Conread position: 305-414
Cow position:
Alignm length: 117
Alignm identity: 98
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 332-414
Cow position:
Alignm length: 86
Alignm identity: 78
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Show alignments to all cow chromosomes.