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Cow genome map

           
Conread name:
           
rtra08_o16r1.y1
        

               
Conread position:
               
157-414
               

               
Cow position:
               
chr5:61600097-61600364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
187-414
               

               
Cow position:
               
chr5:2288842-2288603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
152, 20
               

               
Conread position:
               
199-412
               

               
Cow position:
               
chr5:65887287-65887063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
208-412
               

               
Cow position:
               
chr5:6504134-6503934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
176, 38
               

               
Conread position:
               
208-412
               

               
Cow position:
               
chr5:33081054-33080845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
208-412
               

               
Cow position:
               
chr5:34528300-34528504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
208-412
               

               
Cow position:
               
chr5:40889547-40889338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 22
               

               
Conread position:
               
208-412
               

               
Cow position:
               
chr5:59082456-59082246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
126, 70
               

               
Conread position:
               
208-413
               

               
Cow position:
               
chr5:3281132-3280927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
129, 64
               

               
Conread position:
               
208-413
               

               
Cow position:
               
chr5:42667656-42667442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 111
               

               
Conread position:
               
208-413
               

               
Cow position:
               
chr5:47704399-47704182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:3242729-3242531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:4507225-4507009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:12352046-12351843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
60, 113
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:13691840-13691623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:14550850-14550636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:15462461-15462660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
174, 15
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:21524900-21525116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:21944117-21944342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:24348850-24349053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:29827789-29827994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 124
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:31469847-31469637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 75
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:33414669-33414464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 62
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:34915878-34916084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 131
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:38853095-38853311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:42063939-42064148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
145, 118
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:42747897-42748102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
142, 20
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:43858692-43858488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:44583382-44583183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 123
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:47313209-47313421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
56, 113
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:54405158-54404946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 28
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:54875941-54875734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
174, 23
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:55756705-55756480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:57327524-57327742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:58519663-58519454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
57, 95
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:61576275-61576489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr5:63964445-63964221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
208-415
               

               
Cow position:
               
chr5:50722786-50722995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 93
               

               
Conread position:
               
209-412
               

               
Cow position:
               
chr5:39447798-39447587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
209-412
               

               
Cow position:
               
chr5:63987710-63987502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 123
               

               
Conread position:
               
209-413
               

               
Cow position:
               
chr5:5938061-5938270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
209-413
               

               
Cow position:
               
chr5:17999759-17999548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
209-413
               

               
Cow position:
               
chr5:23856426-23856217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
209-413
               

               
Cow position:
               
chr5:28224192-28224398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 79
               

               
Conread position:
               
209-413
               

               
Cow position:
               
chr5:44054298-44054091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
209-413
               

               
Cow position:
               
chr5:47888978-47888765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
209-413
               

               
Cow position:
               
chr5:50483125-50482920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:3491938-3492140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 125
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:5111340-5111130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 163
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:9894390-9894184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 102
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:12672285-12672085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:16184829-16185032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:26377927-26377724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:26990130-26990337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
61, 153
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:28927860-28927644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:45940876-45940669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:48828884-48829106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:49820879-49821092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
59, 102
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:53855441-53855643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 71
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:55176629-55176835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 27
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:56443018-56443231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
90, 14
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:56467441-56467645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
94, 51
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:59443514-59443303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 68
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:65933191-65932983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:72287182-72286968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 143
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr5:72564495-72564707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
37, 147
               

               
Conread position:
               
210-413
               

               
Cow position:
               
chr5:47317230-47317027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 58
               

               
Conread position:
               
210-414
               

               
Cow position:
               
chr5:16508834-16509041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 92
               

               
Conread position:
               
210-414
               

               
Cow position:
               
chr5:21040235-21040028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
210-414
               

               
Cow position:
               
chr5:23140840-23140630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
35, 168
               

               
Conread position:
               
210-414
               

               
Cow position:
               
chr5:34049847-34050061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
210-414
               

               
Cow position:
               
chr5:34288729-34288526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
210-414
               

               
Cow position:
               
chr5:61839926-61840137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 67
               

               
Conread position:
               
211-414
               

               
Cow position:
               
chr5:14415508-14415724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
40, 109
               

               
Conread position:
               
211-414
               

               
Cow position:
               
chr5:21828595-21828811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
211-414
               

               
Cow position:
               
chr5:65776656-65776437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
212-408
               

               
Cow position:
               
chr5:41981141-41981336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
51, 108
               

               
Conread position:
               
212-414
               

               
Cow position:
               
chr5:37366630-37366846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
213-414
               

               
Cow position:
               
chr5:26094428-26094217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
215-414
               

               
Cow position:
               
chr5:50729238-50729445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
215-414
               

               
Cow position:
               
chr5:50821531-50821727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
48, 104
               

               
Conread position:
               
217-412
               

               
Cow position:
               
chr5:26370452-26370642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
167, 45
               

               
Conread position:
               
217-414
               

               
Cow position:
               
chr5:6575837-6575643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
163, 9
               

               
Conread position:
               
218-415
               

               
Cow position:
               
chr5:32140959-32140762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
220-414
               

               
Cow position:
               
chr5:3204583-3204782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
49, 84
               

               
Conread position:
               
220-414
               

               
Cow position:
               
chr5:28330584-28330388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
43, 144
               

               
Conread position:
               
221-414
               

               
Cow position:
               
chr5:30486997-30487182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
161, 53
               

               
Conread position:
               
221-414
               

               
Cow position:
               
chr5:52165433-52165233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
221-414
               

               
Cow position:
               
chr5:65601209-65601408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
224-414
               

               
Cow position:
               
chr5:72150000-72150192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
18, 110
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chr5:16938253-16938062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
41, 92
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chr5:46323057-46322865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
41, 131
               

               
Conread position:
               
231-414
               

               
Cow position:
               
chr5:30639091-30638913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
153, 37
               

               
Conread position:
               
232-410
               

               
Cow position:
               
chr5:4617137-4617310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
232-414
               

               
Cow position:
               
chr5:32087961-32087769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
232-414
               

               
Cow position:
               
chr5:34115422-34115595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
36, 97
               

               
Conread position:
               
232-414
               

               
Cow position:
               
chr5:58144846-58144656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
232-414
               

               
Cow position:
               
chr5:67932701-67932519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
103, 84
               

               
Conread position:
               
232-417
               

               
Cow position:
               
chr5:51999979-52000170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
233-413
               

               
Cow position:
               
chr5:6032999-6033184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
233-414
               

               
Cow position:
               
chr5:2500420-2500239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
125, 35
               

               
Conread position:
               
233-414
               

               
Cow position:
               
chr5:32975790-32975606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
154, 119
               

               
Conread position:
               
233-414
               

               
Cow position:
               
chr5:43738187-43738009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
152, 23
               

               
Conread position:
               
233-414
               

               
Cow position:
               
chr5:44994276-44994093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
233-414
               

               
Cow position:
               
chr5:56433562-56433749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
98, 35
               

               
Conread position:
               
236-410
               

               
Cow position:
               
chr5:34885392-34885213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
236-414
               

               
Cow position:
               
chr5:20127818-20128001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
236-414
               

               
Cow position:
               
chr5:60519930-60520107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
27, 91
               

               
Conread position:
               
237-411
               

               
Cow position:
               
chr5:36854977-36855147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
237-413
               

               
Cow position:
               
chr5:26099605-26099428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
144, 130
               

               
Conread position:
               
237-414
               

               
Cow position:
               
chr5:41164853-41165031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 101
               

               
Conread position:
               
238-412
               

               
Cow position:
               
chr5:14904301-14904123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
142, 34
               

               
Conread position:
               
238-414
               

               
Cow position:
               
chr5:28324111-28324299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
238-414
               

               
Cow position:
               
chr5:42777530-42777709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 115
               

               
Conread position:
               
239-412
               

               
Cow position:
               
chr5:4032222-4032049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
239-412
               

               
Cow position:
               
chr5:27904184-27904357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
239-413
               

               
Cow position:
               
chr5:12563239-12563061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
239-414
               

               
Cow position:
               
chr5:17063327-17063145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
239-414
               

               
Cow position:
               
chr5:24642955-24642781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
239-414
               

               
Cow position:
               
chr5:32963862-32963685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
239-414
               

               
Cow position:
               
chr5:34300692-34300861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
239-414
               

               
Cow position:
               
chr5:42744564-42744733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
144, 29
               

               
Conread position:
               
239-414
               

               
Cow position:
               
chr5:43992092-43992267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
239-415
               

               
Cow position:
               
chr5:75230451-75230628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
240-414
               

               
Cow position:
               
chr5:21964059-21964232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
241-414
               

               
Cow position:
               
chr5:64137020-64137199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
242-410
               

               
Cow position:
               
chr5:36868515-36868681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
21, 117
               

               
Conread position:
               
242-412
               

               
Cow position:
               
chr5:62172188-62172359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
26, 94
               

               
Conread position:
               
242-414
               

               
Cow position:
               
chr5:3771616-3771793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
26, 120
               

               
Conread position:
               
242-414
               

               
Cow position:
               
chr5:40357100-40356920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
242-414
               

               
Cow position:
               
chr5:49685511-49685325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
243-414
               

               
Cow position:
               
chr5:32697042-32696876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
243-414
               

               
Cow position:
               
chr5:46122578-46122405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
244-414
               

               
Cow position:
               
chr5:741177-740995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
245-414
               

               
Cow position:
               
chr5:26262897-26262729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
246-412
               

               
Cow position:
               
chr5:71454822-71454652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
246-414
               

               
Cow position:
               
chr5:51490980-51490813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
22, 49
               

               
Conread position:
               
246-414
               

               
Cow position:
               
chr5:56820486-56820317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
247-414
               

               
Cow position:
               
chr5:5257522-5257348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
251-414
               

               
Cow position:
               
chr5:40152254-40152423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
252-414
               

               
Cow position:
               
chr5:2309785-2309611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
256-414
               

               
Cow position:
               
chr5:62261655-62261811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
129, 81
               

               
Conread position:
               
257-414
               

               
Cow position:
               
chr5:8024407-8024250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
257-415
               

               
Cow position:
               
chr5:33537675-33537834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
259-413
               

               
Cow position:
               
chr5:44049490-44049645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
125, 71
               

               
Conread position:
               
261-414
               

               
Cow position:
               
chr5:29212738-29212889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
118, 69
               

               
Conread position:
               
262-412
               

               
Cow position:
               
chr5:71494607-71494763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
262-414
               

               
Cow position:
               
chr5:40039980-40039825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
72, 99
               

               
Conread position:
               
262-414
               

               
Cow position:
               
chr5:47547926-47547772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
263-414
               

               
Cow position:
               
chr5:7140313-7140163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
117, 76
               

               
Conread position:
               
263-414
               

               
Cow position:
               
chr5:57271473-57271320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
61, 75
               

               
Conread position:
               
267-411
               

               
Cow position:
               
chr5:35449049-35449195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
273-415
               

               
Cow position:
               
chr5:57575567-57575715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
276-413
               

               
Cow position:
               
chr5:69731322-69731451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 54
               

               
Conread position:
               
279-414
               

               
Cow position:
               
chr5:50870349-50870491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
282-414
               

               
Cow position:
               
chr5:48010036-48009904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
104, 57
               

               
Conread position:
               
285-414
               

               
Cow position:
               
chr5:39242376-39242249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
99, 52
               

               
Conread position:
               
288-414
               

               
Cow position:
               
chr5:37808848-37808724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
57, 80
               

               
Conread position:
               
290-414
               

               
Cow position:
               
chr5:46512948-46512818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
290-414
               

               
Cow position:
               
chr5:71722879-71723013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
293-414
               

               
Cow position:
               
chr5:3668719-3668847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
294-413
               

               
Cow position:
               
chr5:28957794-28957666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
296-410
               

               
Cow position:
               
chr5:43816786-43816666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
296-414
               

               
Cow position:
               
chr5:69520715-69520838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
297-414
               

               
Cow position:
               
chr5:45026092-45025972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
299-414
               

               
Cow position:
               
chr5:23913914-23914038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
304-414
               

               
Cow position:
               
chr5:30950087-30949971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
307-413
               

               
Cow position:
               
chr5:14629980-14629869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
311-414
               

               
Cow position:
               
chr5:71579013-71579120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
321-414
               

               
Cow position:
               
chr5:54750686-54750782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               
Show alignments to all cow chromosomes.