Cow genome map

Conread name: rtra13_j5r1.y1

Conread position: 43-288
Cow position: chr11:60223220-60222968 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 40, 10

Conread position: 94-288
Cow position: chr11:32478298-32478094 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 165
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 21, 71

Conread position: 95-288
Cow position: chr11:30254746-30254939 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 20, 70

Conread position: 105-285
Cow position: chr11:40403233-40403044 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 149, 59

Conread position: 105-288
Cow position: chr11:11256598-11256790 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 153, 58

Conread position: 105-288
Cow position: chr11:38068795-38068987 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 147, 59

Conread position: 105-288
Cow position: chr11:40486688-40486876 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 145, 45

Conread position: 105-288
Cow position: chr11:59871341-59871534 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 105-288
Cow position: chr11:75511666-75511474 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 149, 58

Conread position: 108-288
Cow position: chr11:65281549-65281737 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 146, 11

Conread position: 109-286
Cow position: chr11:35542539-35542352 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 152
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 6, 56

Conread position: 109-287
Cow position: chr11:12354363-12354175 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 156
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr11:2534128-2534317 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 7, 56

Conread position: 109-288
Cow position: chr11:3495572-3495761 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 155
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 6, 35

Conread position: 109-288
Cow position: chr11:4267622-4267435 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 10, 34

Conread position: 109-288
Cow position: chr11:7121434-7121245 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:7228783-7228972 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr11:8201202-8201013 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:8444458-8444269 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:9707677-9707866 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:10699217-10699028 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 158
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:10850650-10850839 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr11:14260518-14260330 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 10, 34

Conread position: 109-288
Cow position: chr11:15987781-15987967 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 6, 53

Conread position: 109-288
Cow position: chr11:17105160-17104971 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 158
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:17548687-17548876 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 5, 56

Conread position: 109-288
Cow position: chr11:19099954-19099767 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr11:20731693-20731504 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:26550010-26550199 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 10, 65

Conread position: 109-288
Cow position: chr11:28125044-28125233 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:30104663-30104473 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 157
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 6, 57

Conread position: 109-288
Cow position: chr11:30201161-30200975 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 155
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 149, 8

Conread position: 109-288
Cow position: chr11:32078250-32078061 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 151
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr11:33602099-33601910 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr11:35142802-35142613 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 158
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:35738813-35738624 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr11:38574953-38574765 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:38701901-38702090 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:38832949-38832760 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 151
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 6, 64

Conread position: 109-288
Cow position: chr11:39585192-39585003 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:41168165-41167976 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr11:41313825-41314014 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:43511442-43511253 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 10, 64

Conread position: 109-288
Cow position: chr11:44154548-44154360 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 10, 30

Conread position: 109-288
Cow position: chr11:44254604-44254792 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 10, 30

Conread position: 109-288
Cow position: chr11:44515245-44515055 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 156
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 6, 57

Conread position: 109-288
Cow position: chr11:44516641-44516451 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 156
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 6, 57

Conread position: 109-288
Cow position: chr11:44580701-44580512 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 151
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr11:46781801-46781613 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 10, 26

Conread position: 109-288
Cow position: chr11:47737016-47736827 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 158
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:47973322-47973134 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 155
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:48168532-48168349 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 11, 56

Conread position: 109-288
Cow position: chr11:50511143-50510954 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:50834229-50834041 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:56917474-56917289 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:57625648-57625458 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 159
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 6, 57

Conread position: 109-288
Cow position: chr11:58139239-58139425 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 10, 53

Conread position: 109-288
Cow position: chr11:61848204-61848015 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:63390947-63390761 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 6, 53

Conread position: 109-288
Cow position: chr11:64353793-64353604 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 8, 56

Conread position: 109-288
Cow position: chr11:67453184-67453373 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:71332031-71332220 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 159
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr11:72365717-72365906 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr11:73799170-73798980 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 157
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 6, 57

Conread position: 109-288
Cow position: chr11:79749354-79749164 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 157
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 6, 57

Conread position: 109-288
Cow position: chr11:84966643-84966832 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 159
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 6, 56

Conread position: 113-288
Cow position: chr11:3790330-3790508 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr11:6342995-6343179 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 153
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr11:10093417-10093600 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 151
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr11:12317536-12317352 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr11:15127349-15127533 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 28, 23

Conread position: 113-288
Cow position: chr11:19061540-19061356 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 153
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 138, 51

Conread position: 113-288
Cow position: chr11:26400016-26400199 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 139, 43

Conread position: 113-288
Cow position: chr11:27659783-27659967 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 15, 52

Conread position: 113-288
Cow position: chr11:39600329-39600144 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 141, 0

Conread position: 113-288
Cow position: chr11:56462896-56463080 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 153
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr11:66739682-66739499 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 153
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 139, 25

Conread position: 113-288
Cow position: chr11:74928334-74928517 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr11:76371531-76371347 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr11:83284431-83284614 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 146
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 106, 51

Conread position: 114-288
Cow position: chr11:66945800-66945616 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 150
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 140, 0

Conread position: 118-288
Cow position: chr11:53429482-53429304 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 151
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 136, 46

Conread position: 128-288
Cow position: chr11:30928931-30929100 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 137
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 128, 36

Conread position: 140-288
Cow position: chr11:18921022-18920868 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 114, 21

Conread position: 140-288
Cow position: chr11:29613953-29614110 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 132
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 114, 24

Conread position: 150-288
Cow position: chr11:32402288-32402141 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 122
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 106, 14

Conread position: 153-288
Cow position: chr11:5482870-5482727 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 101, 11

Conread position: 161-288
Cow position: chr11:38021895-38021758 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 165-288
Cow position: chr11:9079979-9079846 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 166-288
Cow position: chr11:73136920-73137051 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 90, 19

Conread position: 169-288
Cow position: chr11:67920743-67920614 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 87, 0

Conread position: 178-288
Cow position: chr11:41261330-41261210 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 78, 0

Show alignments to all cow chromosomes.