Cow genome map

Conread name: rtra13_j5r1.y1

Conread position: 95-288
Cow position: chr16:47772379-47772581 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 159, 69

Conread position: 103-286
Cow position: chr16:41684175-41683985 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 106, 69

Conread position: 103-288
Cow position: chr16:4973397-4973203 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 149, 61

Conread position: 105-288
Cow position: chr16:19887154-19887340 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 147, 59

Conread position: 105-288
Cow position: chr16:25260252-25260444 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 152
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 148, 59

Conread position: 105-288
Cow position: chr16:49529533-49529722 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 32, 43

Conread position: 106-288
Cow position: chr16:48012531-48012350 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 109-286
Cow position: chr16:4756153-4756342 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 158
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 5, 58

Conread position: 109-288
Cow position: chr16:34630-34819 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 159
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr16:40667-40854 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:417024-417214 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 157
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 10, 55

Conread position: 109-288
Cow position: chr16:1434327-1434516 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 156
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 6, 57

Conread position: 109-288
Cow position: chr16:1565546-1565357 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 11, 56

Conread position: 109-288
Cow position: chr16:2408764-2408575 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:2725092-2724905 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 150
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:3148900-3148711 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:3769880-3769691 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:4462181-4461992 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:5487902-5488089 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 156
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 145, 41

Conread position: 109-288
Cow position: chr16:7466744-7466932 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 156
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 5, 56

Conread position: 109-288
Cow position: chr16:7674330-7674141 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:10440370-10440558 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 10, 63

Conread position: 109-288
Cow position: chr16:11744671-11744860 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 9, 56

Conread position: 109-288
Cow position: chr16:12651058-12651247 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 159
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr16:13539294-13539105 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr16:14662978-14662789 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 159
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 10, 28

Conread position: 109-288
Cow position: chr16:15187199-15187387 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:15311413-15311602 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr16:15494589-15494777 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:15569900-15570088 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 159
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:15812199-15812387 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 42

Conread position: 109-288
Cow position: chr16:17111382-17111571 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 159
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr16:20642618-20642810 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 6, 55

Conread position: 109-288
Cow position: chr16:20968669-20968480 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:21017690-21017878 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 10, 37

Conread position: 109-288
Cow position: chr16:24407041-24407229 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 6, 42

Conread position: 109-288
Cow position: chr16:24621567-24621378 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 160
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr16:24988587-24988398 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr16:27731251-27731062 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:28194170-28193981 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr16:31586566-31586377 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr16:36241265-36241454 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 7, 56

Conread position: 109-288
Cow position: chr16:37146107-37146296 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr16:37478730-37478541 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr16:54431704-54431893 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr16:56861440-56861629 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 111-288
Cow position: chr16:44049790-44049604 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 152
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 50, 62

Conread position: 112-288
Cow position: chr16:43563258-43563076 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 153
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 142, 52

Conread position: 112-288
Cow position: chr16:44127705-44127519 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 149
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 79, 59

Conread position: 113-286
Cow position: chr16:42734497-42734314 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 150
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 16, 54

Conread position: 113-288
Cow position: chr16:2394505-2394688 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 135, 58

Conread position: 113-288
Cow position: chr16:3819501-3819684 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 157
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 141, 29

Conread position: 113-288
Cow position: chr16:4426226-4426410 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 141, 42

Conread position: 113-288
Cow position: chr16:7009194-7009375 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 149
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 141, 49

Conread position: 113-288
Cow position: chr16:12535803-12535619 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 152
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr16:16150613-16150428 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 153
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 25, 52

Conread position: 113-288
Cow position: chr16:18975001-18975188 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 55

Conread position: 113-288
Cow position: chr16:21189393-21189577 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 152
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 143, 51

Conread position: 113-288
Cow position: chr16:23364776-23364592 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 141, 46

Conread position: 113-288
Cow position: chr16:24210262-24210078 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 143, 51

Conread position: 113-288
Cow position: chr16:25087744-25087927 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 27, 21

Conread position: 113-288
Cow position: chr16:25344113-25344297 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 151
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr16:25455326-25455142 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 143, 51

Conread position: 113-288
Cow position: chr16:25964050-25964233 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 141, 32

Conread position: 113-288
Cow position: chr16:28206973-28206792 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 152
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 141, 48

Conread position: 113-288
Cow position: chr16:34505835-34506019 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 156
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 143, 51

Conread position: 113-288
Cow position: chr16:42074752-42074573 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr16:43895127-43894943 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr16:46554557-46554741 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 152
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 143, 51

Conread position: 113-288
Cow position: chr16:49231145-49230962 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 151
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr16:56914098-56913910 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 91, 51

Conread position: 114-288
Cow position: chr16:43744436-43744267 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 71, 23

Conread position: 115-288
Cow position: chr16:26653807-26653989 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 21, 60

Conread position: 115-288
Cow position: chr16:28066194-28066376 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 151
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 141, 49

Conread position: 118-288
Cow position: chr16:25444018-25444197 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 147
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 136, 46

Conread position: 118-288
Cow position: chr16:41036884-41036707 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 138, 46

Conread position: 118-288
Cow position: chr16:46102476-46102297 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 143
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 136, 46

Conread position: 122-288
Cow position: chr16:26665848-26666023 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 140, 42

Conread position: 127-288
Cow position: chr16:13422769-13422600 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 127, 27

Conread position: 131-288
Cow position: chr16:2480987-2480825 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 96, 11

Conread position: 148-288
Cow position: chr16:26316881-26317030 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 108, 16

Conread position: 156-288
Cow position: chr16:19081230-19081371 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 96, 8

Conread position: 156-288
Cow position: chr16:42210674-42210815 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 100, 15

Conread position: 161-288
Cow position: chr16:54479388-54479525 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 0

Conread position: 171-288
Cow position: chr16:27593630-27593503 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 184-288
Cow position: chr16:14100059-14100171 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 0

Show alignments to all cow chromosomes.