Cow genome map
| Conread name: | rtra13_j5r1.y1 |
| Conread position: | 103-288 |
| Cow position: | chr18:23072169-23071980 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 61 |
| Conread position: | 105-288 |
| Cow position: | chr18:38090446-38090257 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 105-288 |
| Cow position: | chr18:42242124-42241931 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 103, 59 |
| Conread position: | 108-288 |
| Cow position: | chr18:17943456-17943642 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 109-288 |
| Cow position: | chr18:603551-603362 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:5202402-5202591 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:9981533-9981722 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:11869400-11869589 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 5, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:14418891-14419080 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:16092733-16092922 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:18216423-18216612 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:23855946-23856136 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 6, 57 |
| Conread position: | 109-288 |
| Cow position: | chr18:24037930-24037741 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:24211850-24212039 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:24619342-24619531 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:25354433-25354620 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 9, 62 |
| Conread position: | 109-288 |
| Cow position: | chr18:25923299-25923488 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:26243667-26243478 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:27995071-27994882 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:28928676-28928487 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:28969372-28969184 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 155 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 9, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:29863691-29863502 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 158 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 9, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:32165018-32164829 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:32437188-32436999 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 156 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:36776189-36776378 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 156 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 9, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:37508880-37509071 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:37583545-37583356 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:37700579-37700390 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:41838199-41838010 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:43472683-43472496 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 6, 43 |
| Conread position: | 109-288 |
| Cow position: | chr18:51459926-51459739 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 6, 27 |
| Conread position: | 109-288 |
| Cow position: | chr18:51602753-51602563 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 6, 57 |
| Conread position: | 109-288 |
| Cow position: | chr18:51697560-51697748 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 6, 34 |
| Conread position: | 109-288 |
| Cow position: | chr18:52574029-52574218 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 156 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:52630344-52630155 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 109-288 |
| Cow position: | chr18:54032633-54032820 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 109-289 |
| Cow position: | chr18:10221944-10222134 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 156 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 6, 56 |
| Conread position: | 112-288 |
| Cow position: | chr18:4953647-4953836 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 70, 52 |
| Conread position: | 113-286 |
| Cow position: | chr18:14479005-14479183 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 113-287 |
| Cow position: | chr18:26336181-26335998 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 141, 61 |
| Conread position: | 113-288 |
| Cow position: | chr18:17323314-17323492 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 143, 50 |
| Conread position: | 113-288 |
| Cow position: | chr18:27539350-27539535 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 113-288 |
| Cow position: | chr18:33271558-33271740 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 141, 51 |
| Conread position: | 113-288 |
| Cow position: | chr18:33848988-33849172 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 113-288 |
| Cow position: | chr18:39273604-39273788 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 145, 61 |
| Conread position: | 113-288 |
| Cow position: | chr18:40758485-40758307 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 136, 48 |
| Conread position: | 113-288 |
| Cow position: | chr18:54066131-54065961 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 115-288 |
| Cow position: | chr18:25867266-25867084 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 139, 49 |
| Conread position: | 118-288 |
| Cow position: | chr18:16173689-16173510 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 151 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 136, 46 |
| Conread position: | 118-288 |
| Cow position: | chr18:27834859-27834680 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 136, 46 |
| Conread position: | 118-288 |
| Cow position: | chr18:27989680-27989859 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 136, 46 |
| Conread position: | 122-288 |
| Cow position: | chr18:51663103-51663278 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 134, 42 |
| Conread position: | 129-288 |
| Cow position: | chr18:33607177-33607339 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 147-288 |
| Cow position: | chr18:6734010-6733860 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 106, 17 |
| Conread position: | 151-284 |
| Cow position: | chr18:43285348-43285208 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 151-288 |
| Cow position: | chr18:37732646-37732792 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 13 |
| Conread position: | 166-288 |
| Cow position: | chr18:17335759-17335633 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 172-288 |
| Cow position: | chr18:55554227-55554353 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.