Cow genome map

Conread name: rtra13_j5r1.y1

Conread position: 51-288
Cow position: chr4:532538-532783 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 64, 29

Conread position: 88-288
Cow position: chr4:21298254-21298043 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 171
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 23, 78

Conread position: 105-288
Cow position: chr4:5486843-5486651 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 152
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 149, 59

Conread position: 105-288
Cow position: chr4:8935160-8935353 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 141, 59

Conread position: 108-288
Cow position: chr4:11108523-11108338 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 151
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 135, 51

Conread position: 109-286
Cow position: chr4:41961446-41961633 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 150
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 6, 56

Conread position: 109-287
Cow position: chr4:31562680-31562492 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 153
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 11, 56

Conread position: 109-288
Cow position: chr4:161712-161902 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 155
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 6, 57

Conread position: 109-288
Cow position: chr4:1047702-1047516 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:1928073-1927897 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 6, 57

Conread position: 109-288
Cow position: chr4:2227428-2227239 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:2264154-2263973 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 5, 56

Conread position: 109-288
Cow position: chr4:3449345-3449534 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:4378941-4379129 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:6266664-6266475 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:6487818-6487629 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:6863682-6863493 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:7778949-7779138 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:8677352-8677539 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 6, 26

Conread position: 109-288
Cow position: chr4:9356787-9356976 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:10045218-10045029 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 11, 56

Conread position: 109-288
Cow position: chr4:12238678-12238489 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:12584074-12583885 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:15814945-15814762 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 6, 53

Conread position: 109-288
Cow position: chr4:16641161-16641350 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:17876518-17876704 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:18336405-18336219 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 6, 53

Conread position: 109-288
Cow position: chr4:20242705-20242894 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:20657510-20657322 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 6, 42

Conread position: 109-288
Cow position: chr4:21341622-21341811 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:25129326-25129515 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:25596937-25596747 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 159
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:27336762-27336951 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:27518823-27518634 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:27881441-27881630 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 158
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:29604925-29604736 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 6, 64

Conread position: 109-288
Cow position: chr4:30578276-30578465 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:31485433-31485244 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:32214704-32214892 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:33021083-33020894 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:33070292-33070103 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 158
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:36026721-36026532 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:36898926-36899115 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:40217387-40217576 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:40697918-40697729 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:41957311-41957500 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:43317100-43316911 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 11, 56

Conread position: 109-288
Cow position: chr4:44778644-44778455 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:45268863-45268674 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:46712047-46711858 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:47055877-47055688 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:49744324-49744514 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 156
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 10, 57

Conread position: 109-288
Cow position: chr4:54758684-54758499 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:56014065-56013876 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:57987293-57987482 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:58291290-58291479 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:61241831-61242021 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr4:62907472-62907283 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr4:63000690-63000875 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 6, 59

Conread position: 109-288
Cow position: chr4:67382836-67383025 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 10, 56

Conread position: 112-288
Cow position: chr4:54811308-54811124 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 149
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 144, 52

Conread position: 113-283
Cow position: chr4:44593821-44593641 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 102, 51

Conread position: 113-288
Cow position: chr4:606165-606349 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 143, 58

Conread position: 113-288
Cow position: chr4:3069476-3069660 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 151
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 139, 51

Conread position: 113-288
Cow position: chr4:4418604-4418784 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 149
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 143, 51

Conread position: 113-288
Cow position: chr4:5611443-5611261 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 141, 19

Conread position: 113-288
Cow position: chr4:17834293-17834109 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 149
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr4:18097057-18096874 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 141, 20

Conread position: 113-288
Cow position: chr4:19236625-19236808 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 152
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 141, 20

Conread position: 113-288
Cow position: chr4:23304787-23304603 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr4:28174308-28174124 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 141, 50

Conread position: 113-288
Cow position: chr4:30473988-30474172 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 155
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 143, 51

Conread position: 113-288
Cow position: chr4:34176438-34176255 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 157
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr4:34385027-34384843 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 146
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 59

Conread position: 113-288
Cow position: chr4:41473276-41473092 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 143, 51

Conread position: 113-288
Cow position: chr4:43897153-43896969 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 156
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr4:54147854-54147673 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 143, 51

Conread position: 113-288
Cow position: chr4:55272698-55272891 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 113-288
Cow position: chr4:62558014-62557830 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 151
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 143, 51

Conread position: 113-288
Cow position: chr4:67393781-67393965 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 143, 51

Conread position: 115-288
Cow position: chr4:26745077-26745259 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 147
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 139, 49

Conread position: 115-288
Cow position: chr4:54932039-54931868 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 139, 47

Conread position: 115-288
Cow position: chr4:54972025-54972203 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 21, 28

Conread position: 118-288
Cow position: chr4:27177387-27177566 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 150
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 136, 46

Conread position: 118-288
Cow position: chr4:29530898-29530719 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 148
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 136, 46

Conread position: 122-288
Cow position: chr4:38180330-38180501 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 132, 16

Conread position: 128-288
Cow position: chr4:17821099-17821268 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 140
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 128, 36

Conread position: 130-288
Cow position: chr4:18266663-18266830 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 138
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 126, 34

Conread position: 134-288
Cow position: chr4:16735043-16734880 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 120, 29

Conread position: 134-288
Cow position: chr4:27891648-27891811 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 134
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 122, 30

Conread position: 138-288
Cow position: chr4:43883673-43883832 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 135
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 116, 26

Conread position: 139-288
Cow position: chr4:41190580-41190423 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 115, 25

Conread position: 146-288
Cow position: chr4:10424079-10424230 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 110, 18

Conread position: 149-288
Cow position: chr4:6547625-6547773 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 120
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 107, 15

Conread position: 159-288
Cow position: chr4:44957812-44957673 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 95, 0

Conread position: 165-288
Cow position: chr4:18813604-18813472 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 112
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 89, 39

Show alignments to all cow chromosomes.