Cow genome map

Conread name: rtra13_j5r1.y1

Conread position: 72-288
Cow position: chr9:2856526-2856750 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 43, 8

Conread position: 92-288
Cow position: chr9:14045377-14045580 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 147, 15

Conread position: 105-288
Cow position: chr9:37097336-37097527 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 149, 59

Conread position: 105-288
Cow position: chr9:61740321-61740131 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 80, 57

Conread position: 106-288
Cow position: chr9:34688088-34688269 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 153, 58

Conread position: 108-288
Cow position: chr9:5006699-5006887 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 149
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 57

Conread position: 109-287
Cow position: chr9:50840150-50840338 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 156
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:128134-127946 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:202573-202378 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:778099-777908 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 158
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 6, 58

Conread position: 109-288
Cow position: chr9:1000182-1000371 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:1071568-1071378 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 6, 57

Conread position: 109-288
Cow position: chr9:1099311-1099500 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:1249280-1249091 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:2173253-2173441 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:2835278-2835090 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 152
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:2873191-2873380 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 151
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 5, 56

Conread position: 109-288
Cow position: chr9:3052262-3052076 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:3061308-3061497 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:3547908-3547718 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 115
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 109-288
Cow position: chr9:3998042-3997852 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 153
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 6, 57

Conread position: 109-288
Cow position: chr9:5430184-5430373 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:5452923-5452734 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:6549894-6550083 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:8283491-8283302 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 159
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:9015791-9015980 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 159
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:13312282-13312471 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 158
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:14002757-14002946 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 7, 56

Conread position: 109-288
Cow position: chr9:15053165-15052974 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 155
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 7, 58

Conread position: 109-288
Cow position: chr9:17017466-17017660 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 159
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 6, 61

Conread position: 109-288
Cow position: chr9:18539382-18539569 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:19156567-19156387 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:21412029-21412218 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 158
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:22655530-22655718 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:26325463-26325652 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 158
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:27037825-27038014 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 160
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:28024536-28024725 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:28658332-28658143 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:28785055-28785248 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 161
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 6, 60

Conread position: 109-288
Cow position: chr9:30674792-30674981 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:31810295-31810483 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 151
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:32972084-32972273 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:34240382-34240193 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 158
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:35543811-35543622 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 159
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:37158893-37158704 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:38678846-38679034 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 6, 26

Conread position: 109-288
Cow position: chr9:39813032-39813221 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:41507129-41506940 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:42569933-42570122 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 11, 56

Conread position: 109-288
Cow position: chr9:43493661-43493850 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:43495851-43496040 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:44203352-44203174 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:46627030-46627217 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 6, 64

Conread position: 109-288
Cow position: chr9:46668081-46667894 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 6, 45

Conread position: 109-288
Cow position: chr9:47005458-47005647 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:47044664-47044853 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:47170763-47170954 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 159
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 8, 57

Conread position: 109-288
Cow position: chr9:52401676-52401865 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:54459784-54459596 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 8, 56

Conread position: 109-288
Cow position: chr9:56176487-56176676 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 56

Conread position: 109-288
Cow position: chr9:59480131-59479942 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 10, 56

Conread position: 109-288
Cow position: chr9:64012512-64012323 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 6, 56

Conread position: 110-288
Cow position: chr9:50003167-50003354 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 154
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 146, 54

Conread position: 113-286
Cow position: chr9:29787936-29787773 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 113-288
Cow position: chr9:1998573-1998389 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 151
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 28, 23

Conread position: 113-288
Cow position: chr9:6886313-6886502 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 17, 52

Conread position: 113-288
Cow position: chr9:9492633-9492441 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 10

Conread position: 113-288
Cow position: chr9:13472839-13472655 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr9:14766785-14766956 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 7, 52

Conread position: 113-288
Cow position: chr9:17870216-17870400 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr9:26081596-26081410 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 149
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 70, 37

Conread position: 113-288
Cow position: chr9:27782168-27781984 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 153
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr9:28774520-28774336 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr9:34695967-34696151 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 154
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 141, 51

Conread position: 113-288
Cow position: chr9:44168312-44168495 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 149
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 143, 51

Conread position: 113-288
Cow position: chr9:59196579-59196763 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 138, 61

Conread position: 114-287
Cow position: chr9:9958457-9958281 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 144
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 139, 47

Conread position: 114-288
Cow position: chr9:1850891-1850708 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 147
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 137, 50

Conread position: 114-288
Cow position: chr9:36845201-36845021 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 134, 63

Conread position: 114-288
Cow position: chr9:43667556-43667736 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 140, 19

Conread position: 116-287
Cow position: chr9:56301715-56301535 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 146
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 140, 48

Conread position: 118-284
Cow position: chr9:7059335-7059163 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 143
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 136, 53

Conread position: 118-288
Cow position: chr9:10856747-10856926 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 153
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 136, 46

Conread position: 118-288
Cow position: chr9:12260634-12260458 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 133, 46

Conread position: 118-288
Cow position: chr9:18507097-18506918 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 136, 46

Conread position: 119-288
Cow position: chr9:6252297-6252474 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 144
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 135, 45

Conread position: 119-288
Cow position: chr9:37174677-37174499 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 149
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 135, 45

Conread position: 120-286
Cow position: chr9:10325674-10325849 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 142
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 134, 44

Conread position: 124-288
Cow position: chr9:39303820-39303647 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 144
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 132, 40

Conread position: 124-288
Cow position: chr9:42718617-42718790 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 140
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 132, 40

Conread position: 124-288
Cow position: chr9:43845359-43845532 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 142
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 132, 40

Conread position: 127-288
Cow position: chr9:20577607-20577780 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 149-288
Cow position: chr9:24423079-24423227 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 105, 15

Conread position: 151-288
Cow position: chr9:34059873-34059727 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 103, 13

Conread position: 151-288
Cow position: chr9:55031275-55031421 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 121
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 103, 13

Conread position: 160-288
Cow position: chr9:20941242-20941380 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 172-288
Cow position: chr9:9094288-9094413 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 84, 13

Show alignments to all cow chromosomes.