Non-Coding RNA Search

Cow genome map


           Conread name:
           rtra21_d16r1.y1
        

               Conread position:
               91-278
               

               Cow position:
               chr3:77098627-77098811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               27, 94
               

               Conread position:
               94-231
               

               Cow position:
               chr3:2434545-2434679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               103
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               94-347
               

               Cow position:
               chr3:33252697-33252946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               9, 92
               

               Conread position:
               96-297
               

               Cow position:
               chr3:19709296-19709103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               24, 7
               

               Conread position:
               96-301
               

               Cow position:
               chr3:25735712-25735917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               119, 126
               

               Conread position:
               98-268
               

               Cow position:
               chr3:44218956-44218787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               120, 25
               

               Conread position:
               99-352
               

               Cow position:
               chr3:56476864-56476617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               21, 62
               

               Conread position:
               101-327
               

               Cow position:
               chr3:49363293-49363072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               102-270
               

               Cow position:
               chr3:42484112-42483946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               143, 41
               

               Conread position:
               102-334
               

               Cow position:
               chr3:60597723-60597500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               16, 83
               

               Conread position:
               102-341
               

               Cow position:
               chr3:55124100-55124330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               103-301
               

               Cow position:
               chr3:20065962-20066165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               104-304
               

               Cow position:
               chr3:22675924-22676123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               104-316
               

               Cow position:
               chr3:80023128-80023335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               136, 16
               

               Conread position:
               104-346
               

               Cow position:
               chr3:17221950-17222198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               104-352
               

               Cow position:
               chr3:4319902-4319650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               58, 246
               

               Conread position:
               106-297
               

               Cow position:
               chr3:32436819-32436633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               43, 105
               

               Conread position:
               106-312
               

               Cow position:
               chr3:6299639-6299435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               106-331
               

               Cow position:
               chr3:15950735-15950954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               12, 81
               

               Conread position:
               106-339
               

               Cow position:
               chr3:35153787-35153568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               23, 27
               

               Conread position:
               106-339
               

               Cow position:
               chr3:39996711-39996940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               13, 38
               

               Conread position:
               106-339
               

               Cow position:
               chr3:59040752-59040519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               14, 102
               

               Conread position:
               106-341
               

               Cow position:
               chr3:75158534-75158312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               182
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               106-342
               

               Cow position:
               chr3:22165234-22165469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               227, 85
               

               Conread position:
               106-353
               

               Cow position:
               chr3:68648359-68648104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               12, 119
               

               Conread position:
               107-294
               

               Cow position:
               chr3:83672038-83671851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               12, 80
               

               Conread position:
               107-295
               

               Cow position:
               chr3:29234498-29234687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               87, 33
               

               Conread position:
               107-301
               

               Cow position:
               chr3:25702151-25702353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               93, 123
               

               Conread position:
               107-304
               

               Cow position:
               chr3:4931651-4931854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               72, 15
               

               Conread position:
               107-318
               

               Cow position:
               chr3:15160697-15160492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               166
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               107-342
               

               Cow position:
               chr3:49996536-49996775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               108-278
               

               Cow position:
               chr3:49732871-49733041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               91, 122
               

               Conread position:
               108-336
               

               Cow position:
               chr3:37041598-37041373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 12
               

               Conread position:
               109-300
               

               Cow position:
               chr3:81400929-81401107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               109-316
               

               Cow position:
               chr3:32248192-32247986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               102, 115
               

               Conread position:
               109-337
               

               Cow position:
               chr3:83988713-83988486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               16, 35
               

               Conread position:
               109-352
               

               Cow position:
               chr3:68616156-68616390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               13, 77
               

               Conread position:
               112-315
               

               Cow position:
               chr3:25692205-25692004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               18, 42
               

               Conread position:
               114-323
               

               Cow position:
               chr3:57274230-57274027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               147, 8
               

               Conread position:
               114-334
               

               Cow position:
               chr3:76267802-76268019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               115-278
               

               Cow position:
               chr3:47417399-47417560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               109, 85
               

               Conread position:
               116-242
               

               Cow position:
               chr3:42933653-42933528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               96
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               116-285
               

               Cow position:
               chr3:74050535-74050697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               116-296
               

               Cow position:
               chr3:53192104-53192298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               116-300
               

               Cow position:
               chr3:2016602-2016425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               116-307
               

               Cow position:
               chr3:76300945-76300752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               161, 0
               

               Conread position:
               116-309
               

               Cow position:
               chr3:59272002-59271814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               116-309
               

               Cow position:
               chr3:63860439-63860630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               116-312
               

               Cow position:
               chr3:31115107-31115292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               116-323
               

               Cow position:
               chr3:18831589-18831388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               26, 31
               

               Conread position:
               116-334
               

               Cow position:
               chr3:10591342-10591559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               64, 56
               

               Conread position:
               116-334
               

               Cow position:
               chr3:54739723-54739928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               29, 62
               

               Conread position:
               116-334
               

               Cow position:
               chr3:64280767-64280975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 68
               

               Conread position:
               116-334
               

               Cow position:
               chr3:81087465-81087680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               121, 164
               

               Conread position:
               116-337
               

               Cow position:
               chr3:32310243-32310464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               170, 7
               

               Conread position:
               116-339
               

               Cow position:
               chr3:210493-210270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               116-340
               

               Cow position:
               chr3:15973740-15973516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               83, 6
               

               Conread position:
               116-342
               

               Cow position:
               chr3:23203058-23203283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               116-343
               

               Cow position:
               chr3:7662028-7661803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 168
               

               Conread position:
               116-344
               

               Cow position:
               chr3:2392798-2393016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               139, 68
               

               Conread position:
               116-344
               

               Cow position:
               chr3:16333975-16333742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               116-344
               

               Cow position:
               chr3:54373686-54373914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               95, 108
               

               Conread position:
               116-344
               

               Cow position:
               chr3:75570275-75570507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               84, 50
               

               Conread position:
               116-350
               

               Cow position:
               chr3:1517342-1517572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               116-350
               

               Cow position:
               chr3:28902592-28902814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               116-352
               

               Cow position:
               chr3:3985486-3985266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               116-352
               

               Cow position:
               chr3:7763829-7763594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               95, 66
               

               Conread position:
               116-352
               

               Cow position:
               chr3:47316207-47316442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               102, 68
               

               Conread position:
               116-353
               

               Cow position:
               chr3:71478763-71478532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               180, 30
               

               Conread position:
               117-255
               

               Cow position:
               chr3:53249655-53249523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               117-260
               

               Cow position:
               chr3:58497830-58497687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               117-269
               

               Cow position:
               chr3:22903588-22903732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               117-275
               

               Cow position:
               chr3:2637115-2636964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               112, 36
               

               Conread position:
               117-278
               

               Cow position:
               chr3:3262653-3262822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               117-278
               

               Cow position:
               chr3:66884860-66885018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               88, 65
               

               Conread position:
               117-279
               

               Cow position:
               chr3:57641973-57641811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               62, 92
               

               Conread position:
               117-280
               

               Cow position:
               chr3:3453752-3453589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               117-283
               

               Cow position:
               chr3:26393129-26393293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               117-283
               

               Cow position:
               chr3:43895893-43896053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               117-283
               

               Cow position:
               chr3:44594793-44594627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               160, 6
               

               Conread position:
               117-284
               

               Cow position:
               chr3:18764275-18764109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               73, 155
               

               Conread position:
               117-285
               

               Cow position:
               chr3:26977707-26977539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               129, 27
               

               Conread position:
               117-289
               

               Cow position:
               chr3:60186323-60186146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               11, 86
               

               Conread position:
               117-290
               

               Cow position:
               chr3:4071599-4071770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               117-290
               

               Cow position:
               chr3:22078248-22078075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               154, 170
               

               Conread position:
               117-290
               

               Cow position:
               chr3:77654090-77653928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               117-291
               

               Cow position:
               chr3:11023624-11023443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               73, 114
               

               Conread position:
               117-292
               

               Cow position:
               chr3:562619-562796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               23, 50
               

               Conread position:
               117-292
               

               Cow position:
               chr3:46259882-46259708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               117-293
               

               Cow position:
               chr3:8147353-8147528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               101, 49
               

               Conread position:
               117-293
               

               Cow position:
               chr3:23037338-23037512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               117-294
               

               Cow position:
               chr3:11027447-11027270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               117-295
               

               Cow position:
               chr3:22868546-22868725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               75, 61
               

               Conread position:
               117-295
               

               Cow position:
               chr3:53428748-53428922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               117-296
               

               Cow position:
               chr3:11253995-11254174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               117-296
               

               Cow position:
               chr3:37641496-37641319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               163, 83
               

               Conread position:
               117-296
               

               Cow position:
               chr3:45744080-45743900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               148, 66
               

               Conread position:
               117-296
               

               Cow position:
               chr3:81616280-81616459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               117-297
               

               Cow position:
               chr3:31361593-31361418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               117-297
               

               Cow position:
               chr3:35802766-35802948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               81, 109
               

               Conread position:
               117-297
               

               Cow position:
               chr3:41510748-41510569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               131, 67
               

               Conread position:
               117-297
               

               Cow position:
               chr3:44207707-44207885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               127
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               94, 107
               

               Conread position:
               117-297
               

               Cow position:
               chr3:53150503-53150324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               54, 49
               

               Conread position:
               117-297
               

               Cow position:
               chr3:55730296-55730476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               117-297
               

               Cow position:
               chr3:56943760-56943933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               117-297
               

               Cow position:
               chr3:58562871-58562687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               102, 84
               

               Conread position:
               117-297
               

               Cow position:
               chr3:80958339-80958518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               117-298
               

               Cow position:
               chr3:16710626-16710808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               40, 100
               

               Conread position:
               117-299
               

               Cow position:
               chr3:62186328-62186142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               117-299
               

               Cow position:
               chr3:83705365-83705546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               158, 0
               

               Conread position:
               117-301
               

               Cow position:
               chr3:4518014-4518190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               117-301
               

               Cow position:
               chr3:23640509-23640332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               117-301
               

               Cow position:
               chr3:70402808-70402633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               117-302
               

               Cow position:
               chr3:49741125-49741314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               58, 159
               

               Conread position:
               117-306
               

               Cow position:
               chr3:15660109-15660306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               51, 177
               

               Conread position:
               117-306
               

               Cow position:
               chr3:59317870-59317686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               87, 65
               

               Conread position:
               117-308
               

               Cow position:
               chr3:18699938-18700129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               117-309
               

               Cow position:
               chr3:986185-985995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               117-309
               

               Cow position:
               chr3:9718079-9718270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               94, 107
               

               Conread position:
               117-309
               

               Cow position:
               chr3:13882348-13882540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               86, 142
               

               Conread position:
               117-309
               

               Cow position:
               chr3:59268544-59268352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               79, 107
               

               Conread position:
               117-311
               

               Cow position:
               chr3:6886396-6886200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               63, 116
               

               Conread position:
               117-311
               

               Cow position:
               chr3:52845725-52845537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               117-311
               

               Cow position:
               chr3:59681737-59681925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               117-312
               

               Cow position:
               chr3:16867993-16867808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               117-312
               

               Cow position:
               chr3:27246797-27246981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               117-312
               

               Cow position:
               chr3:51150300-51150106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               99, 14
               

               Conread position:
               117-312
               

               Cow position:
               chr3:53604574-53604768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               122, 79
               

               Conread position:
               117-312
               

               Cow position:
               chr3:75966612-75966803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               165
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 67
               

               Conread position:
               117-313
               

               Cow position:
               chr3:36418317-36418503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               117-314
               

               Cow position:
               chr3:26783337-26783531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               72, 103
               

               Conread position:
               117-316
               

               Cow position:
               chr3:19641235-19641035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               59, 164
               

               Conread position:
               117-316
               

               Cow position:
               chr3:45314522-45314318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               75, 97
               

               Conread position:
               117-316
               

               Cow position:
               chr3:76056118-76056311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               117-317
               

               Cow position:
               chr3:23804672-23804475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               161, 26
               

               Conread position:
               117-318
               

               Cow position:
               chr3:7381662-7381857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               100, 49
               

               Conread position:
               117-318
               

               Cow position:
               chr3:39812229-39812023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               83, 26
               

               Conread position:
               117-318
               

               Cow position:
               chr3:67407197-67407394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               117-319
               

               Cow position:
               chr3:78071622-78071821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               185, 71
               

               Conread position:
               117-320
               

               Cow position:
               chr3:8522984-8523180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               117-320
               

               Cow position:
               chr3:53875592-53875795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               117-320
               

               Cow position:
               chr3:74127330-74127533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               64, 158
               

               Conread position:
               117-321
               

               Cow position:
               chr3:17936677-17936870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               117-321
               

               Cow position:
               chr3:55189580-55189785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               117-322
               

               Cow position:
               chr3:74234351-74234154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               117-322
               

               Cow position:
               chr3:76156156-76155956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               117-322
               

               Cow position:
               chr3:76270058-76269860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               117-326
               

               Cow position:
               chr3:3883650-3883851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               117-326
               

               Cow position:
               chr3:71474237-71474440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               117-326
               

               Cow position:
               chr3:83474924-83474708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               56, 200
               

               Conread position:
               117-327
               

               Cow position:
               chr3:31349939-31350141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               117-327
               

               Cow position:
               chr3:54506876-54506670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               117-327
               

               Cow position:
               chr3:55177581-55177783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               117-328
               

               Cow position:
               chr3:59933550-59933333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               77, 114
               

               Conread position:
               117-328
               

               Cow position:
               chr3:84137644-84137853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               163, 62
               

               Conread position:
               117-329
               

               Cow position:
               chr3:7337617-7337821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               53, 27
               

               Conread position:
               117-329
               

               Cow position:
               chr3:75107942-75107735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               117-330
               

               Cow position:
               chr3:4120201-4120406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               117-330
               

               Cow position:
               chr3:41863792-41863584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               193, 63
               

               Conread position:
               117-331
               

               Cow position:
               chr3:9641725-9641526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               151, 67
               

               Conread position:
               117-331
               

               Cow position:
               chr3:39969693-39969904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               166
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               154, 68
               

               Conread position:
               117-331
               

               Cow position:
               chr3:47753407-47753185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               117-331
               

               Cow position:
               chr3:54781823-54782050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               64, 112
               

               Conread position:
               117-332
               

               Cow position:
               chr3:17304800-17305021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               74, 47
               

               Conread position:
               117-332
               

               Cow position:
               chr3:17456097-17456310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               117-332
               

               Cow position:
               chr3:23105195-23105404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               117-332
               

               Cow position:
               chr3:54905776-54905576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               117-332
               

               Cow position:
               chr3:59649423-59649215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               86, 24
               

               Conread position:
               117-332
               

               Cow position:
               chr3:67929089-67929302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               117-332
               

               Cow position:
               chr3:73467796-73467589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               116, 26
               

               Conread position:
               117-333
               

               Cow position:
               chr3:15153858-15153648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               117-333
               

               Cow position:
               chr3:28896851-28897063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               206, 84
               

               Conread position:
               117-333
               

               Cow position:
               chr3:54350264-54350482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               65, 190
               

               Conread position:
               117-333
               

               Cow position:
               chr3:72027809-72027591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               104, 92
               

               Conread position:
               117-334
               

               Cow position:
               chr3:2025373-2025152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               117-334
               

               Cow position:
               chr3:12090847-12090629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               82, 136
               

               Conread position:
               117-334
               

               Cow position:
               chr3:22221496-22221284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               117-334
               

               Cow position:
               chr3:23753654-23753456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               117-334
               

               Cow position:
               chr3:46005845-46006062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               68, 140
               

               Conread position:
               117-334
               

               Cow position:
               chr3:51578154-51578367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               98, 66
               

               Conread position:
               117-334
               

               Cow position:
               chr3:52457079-52456874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               117-334
               

               Cow position:
               chr3:64010638-64010853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               31, 114
               

               Conread position:
               117-334
               

               Cow position:
               chr3:68587189-68586979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               16, 68
               

               Conread position:
               117-334
               

               Cow position:
               chr3:75050453-75050661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               117-334
               

               Cow position:
               chr3:75777899-75778106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               155, 59
               

               Conread position:
               117-334
               

               Cow position:
               chr3:79884310-79884526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               63, 94
               

               Conread position:
               117-336
               

               Cow position:
               chr3:55819919-55819712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               117-337
               

               Cow position:
               chr3:19793067-19792858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               106, 24
               

               Conread position:
               117-337
               

               Cow position:
               chr3:46305632-46305419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               53, 126
               

               Conread position:
               117-338
               

               Cow position:
               chr3:2506306-2506528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               170
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               188, 133
               

               Conread position:
               117-338
               

               Cow position:
               chr3:48468346-48468123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               211, 0
               

               Conread position:
               117-338
               

               Cow position:
               chr3:48900160-48900380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 0
               

               Conread position:
               117-338
               

               Cow position:
               chr3:59920211-59919984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               59, 192
               

               Conread position:
               117-339
               

               Cow position:
               chr3:8061290-8061080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               117-339
               

               Cow position:
               chr3:8393509-8393301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               117-339
               

               Cow position:
               chr3:10668709-10668928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 65
               

               Conread position:
               117-339
               

               Cow position:
               chr3:11281939-11281717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               117-339
               

               Cow position:
               chr3:18059874-18059653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               171, 67
               

               Conread position:
               117-339
               

               Cow position:
               chr3:27274697-27274482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               117-339
               

               Cow position:
               chr3:48459159-48459378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               168
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               117-339
               

               Cow position:
               chr3:48810468-48810694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               117-339
               

               Cow position:
               chr3:55318728-55318949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               188, 67
               

               Conread position:
               117-339
               

               Cow position:
               chr3:57704502-57704277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               161, 68
               

               Conread position:
               117-339
               

               Cow position:
               chr3:65058869-65058651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               172
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               14, 63
               

               Conread position:
               117-340
               

               Cow position:
               chr3:59474290-59474072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               83, 60
               

               Conread position:
               117-340
               

               Cow position:
               chr3:71231568-71231346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 0
               

               Conread position:
               117-341
               

               Cow position:
               chr3:2638103-2637876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               171
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               68, 225
               

               Conread position:
               117-341
               

               Cow position:
               chr3:3556718-3556494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               117-341
               

               Cow position:
               chr3:26992743-26992519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               98, 105
               

               Conread position:
               117-341
               

               Cow position:
               chr3:52419117-52418886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               83, 171
               

               Conread position:
               117-341
               

               Cow position:
               chr3:76713142-76713373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               62, 182
               

               Conread position:
               117-343
               

               Cow position:
               chr3:2648338-2648563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               117-343
               

               Cow position:
               chr3:15051782-15052001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 81
               

               Conread position:
               117-343
               

               Cow position:
               chr3:23131998-23132222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               117-343
               

               Cow position:
               chr3:23471293-23471512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               117-343
               

               Cow position:
               chr3:30180253-30180032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               196, 68
               

               Conread position:
               117-343
               

               Cow position:
               chr3:62046841-62046612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               79, 215
               

               Conread position:
               117-343
               

               Cow position:
               chr3:78077360-78077131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               132, 67
               

               Conread position:
               117-344
               

               Cow position:
               chr3:7678835-7678604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               59, 143
               

               Conread position:
               117-344
               

               Cow position:
               chr3:14194020-14194231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               117-344
               

               Cow position:
               chr3:31309184-31309410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               219, 26
               

               Conread position:
               117-344
               

               Cow position:
               chr3:49482544-49482770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               84, 26
               

               Conread position:
               117-344
               

               Cow position:
               chr3:52487799-52487561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               64, 113
               

               Conread position:
               117-344
               

               Cow position:
               chr3:54435138-54434923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               117-344
               

               Cow position:
               chr3:59333929-59333716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               11, 89
               

               Conread position:
               117-344
               

               Cow position:
               chr3:59605012-59604792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               177
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               117-347
               

               Cow position:
               chr3:3889407-3889623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               186, 65
               

               Conread position:
               117-347
               

               Cow position:
               chr3:24468214-24468440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               219, 26
               

               Conread position:
               117-347
               

               Cow position:
               chr3:53703777-53704019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               77, 115
               

               Conread position:
               117-348
               

               Cow position:
               chr3:75480168-75479945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               117-349
               

               Cow position:
               chr3:6728151-6728388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               46, 224
               

               Conread position:
               117-349
               

               Cow position:
               chr3:20841709-20841931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               181
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               14, 55
               

               Conread position:
               117-349
               

               Cow position:
               chr3:23408194-23408418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               216, 29
               

               Conread position:
               117-349
               

               Cow position:
               chr3:40212865-40213092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               101, 67
               

               Conread position:
               117-349
               

               Cow position:
               chr3:78945652-78945890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               65, 199
               

               Conread position:
               117-350
               

               Cow position:
               chr3:14547169-14546942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               117-350
               

               Cow position:
               chr3:17058377-17058607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               219, 66
               

               Conread position:
               117-350
               

               Cow position:
               chr3:25477962-25477747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               117-350
               

               Cow position:
               chr3:54100543-54100786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               183
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               117-350
               

               Cow position:
               chr3:58527547-58527327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               220, 68
               

               Conread position:
               117-350
               

               Cow position:
               chr3:71238646-71238415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               20, 99
               

               Conread position:
               117-350
               

               Cow position:
               chr3:77582276-77582051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               94, 67
               

               Conread position:
               117-350
               

               Cow position:
               chr3:83215439-83215201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               181
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               66, 229
               

               Conread position:
               117-351
               

               Cow position:
               chr3:36375368-36375599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               219, 67
               

               Conread position:
               117-351
               

               Cow position:
               chr3:71496959-71497201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               181
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               117-351
               

               Cow position:
               chr3:81234558-81234329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               117-352
               

               Cow position:
               chr3:3032579-3032344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               98, 65
               

               Conread position:
               117-352
               

               Cow position:
               chr3:3656685-3656452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               178
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               102, 26
               

               Conread position:
               117-352
               

               Cow position:
               chr3:18687071-18686846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               117-352
               

               Cow position:
               chr3:21081210-21081438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               74, 26
               

               Conread position:
               117-352
               

               Cow position:
               chr3:48253049-48252820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               215, 65
               

               Conread position:
               117-352
               

               Cow position:
               chr3:48363239-48363015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               117-352
               

               Cow position:
               chr3:53739012-53739247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               50, 87
               

               Conread position:
               117-352
               

               Cow position:
               chr3:65237193-65236961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               219, 66
               

               Conread position:
               117-352
               

               Cow position:
               chr3:66014488-66014256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               14, 159
               

               Conread position:
               117-352
               

               Cow position:
               chr3:70333799-70334025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               117-352
               

               Cow position:
               chr3:74533504-74533287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               117-352
               

               Cow position:
               chr3:83491250-83491024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               117-353
               

               Cow position:
               chr3:49344862-49344633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               117-353
               

               Cow position:
               chr3:77188610-77188375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               118-270
               

               Cow position:
               chr3:83482492-83482333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               78, 136
               

               Conread position:
               118-278
               

               Cow position:
               chr3:68624388-68624229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               118-294
               

               Cow position:
               chr3:6579649-6579480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               159, 25
               

               Conread position:
               118-295
               

               Cow position:
               chr3:12899777-12899945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               118-297
               

               Cow position:
               chr3:23818656-23818484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               118-297
               

               Cow position:
               chr3:58540348-58540528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               59, 149
               

               Conread position:
               118-308
               

               Cow position:
               chr3:70756470-70756660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               118-309
               

               Cow position:
               chr3:77171487-77171296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               16, 11
               

               Conread position:
               118-316
               

               Cow position:
               chr3:13348969-13349175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               7, 26
               

               Conread position:
               118-317
               

               Cow position:
               chr3:59597342-59597151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               118-321
               

               Cow position:
               chr3:3584883-3584682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               97, 13
               

               Conread position:
               118-324
               

               Cow position:
               chr3:20021437-20021235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               159
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               118-330
               

               Cow position:
               chr3:64196994-64196786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               118-331
               

               Cow position:
               chr3:19682875-19682654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               118-333
               

               Cow position:
               chr3:67930001-67930226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               67, 148
               

               Conread position:
               118-334
               

               Cow position:
               chr3:5040134-5040351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               171
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               73, 104
               

               Conread position:
               118-334
               

               Cow position:
               chr3:45882068-45881854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               118-341
               

               Cow position:
               chr3:73299234-73299030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               118-342
               

               Cow position:
               chr3:17235035-17235265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               59, 134
               

               Conread position:
               118-352
               

               Cow position:
               chr3:23920257-23920490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               118, 129
               

               Conread position:
               118-352
               

               Cow position:
               chr3:24872861-24872653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               218, 25
               

               Conread position:
               118-352
               

               Cow position:
               chr3:53271002-53270768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               118-352
               

               Cow position:
               chr3:65019684-65019927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               28, 111
               

               Conread position:
               119-308
               

               Cow position:
               chr3:20158242-20158050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               119-322
               

               Cow position:
               chr3:54946289-54946099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               119-327
               

               Cow position:
               chr3:23168900-23169100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               119-327
               

               Cow position:
               chr3:70761955-70762157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               119-334
               

               Cow position:
               chr3:82366297-82366085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               172
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               126, 71
               

               Conread position:
               119-338
               

               Cow position:
               chr3:76024671-76024458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               169, 25
               

               Conread position:
               119-339
               

               Cow position:
               chr3:61169978-61169755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               58, 123
               

               Conread position:
               119-352
               

               Cow position:
               chr3:29813394-29813183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               229, 57
               

               Conread position:
               119-352
               

               Cow position:
               chr3:51233936-51234157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               155, 66
               

               Conread position:
               120-284
               

               Cow position:
               chr3:44782505-44782345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               120-300
               

               Cow position:
               chr3:13949372-13949569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               57, 175
               

               Conread position:
               120-321
               

               Cow position:
               chr3:38864285-38864094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               145, 46
               

               Conread position:
               120-339
               

               Cow position:
               chr3:55970682-55970458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               120-339
               

               Cow position:
               chr3:65969341-65969118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               121-276
               

               Cow position:
               chr3:55105980-55106135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               121-298
               

               Cow position:
               chr3:83934890-83934717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               115, 63
               

               Conread position:
               121-301
               

               Cow position:
               chr3:28883996-28884172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               121-309
               

               Cow position:
               chr3:41366534-41366729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               121-309
               

               Cow position:
               chr3:43388959-43389147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               121-352
               

               Cow position:
               chr3:54067960-54067736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               90, 22
               

               Conread position:
               122-297
               

               Cow position:
               chr3:29334245-29334421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               123-301
               

               Cow position:
               chr3:38331446-38331623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               123-327
               

               Cow position:
               chr3:39661290-39661493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               157, 0
               

               Conread position:
               123-328
               

               Cow position:
               chr3:72255254-72255457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               95, 101
               

               Conread position:
               123-339
               

               Cow position:
               chr3:34871732-34871518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               123-339
               

               Cow position:
               chr3:59702338-59702123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               61, 161
               

               Conread position:
               123-341
               

               Cow position:
               chr3:35055812-35056029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               174, 84
               

               Conread position:
               123-341
               

               Cow position:
               chr3:71238314-71238103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               123-343
               

               Cow position:
               chr3:74644724-74644503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               186, 175
               

               Conread position:
               123-347
               

               Cow position:
               chr3:19711173-19711397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               102, 9
               

               Conread position:
               123-347
               

               Cow position:
               chr3:52651916-52652137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               172
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               141, 68
               

               Conread position:
               123-350
               

               Cow position:
               chr3:59000599-59000811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               123-351
               

               Cow position:
               chr3:51609020-51609247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               213, 84
               

               Conread position:
               123-352
               

               Cow position:
               chr3:2675196-2674967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               213, 223
               

               Conread position:
               124-280
               

               Cow position:
               chr3:10115458-10115308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               124-312
               

               Cow position:
               chr3:40145630-40145442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               124-343
               

               Cow position:
               chr3:73820202-73820421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               172
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               86, 19
               

               Conread position:
               124-347
               

               Cow position:
               chr3:53046495-53046716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 160
               

               Conread position:
               125-300
               

               Cow position:
               chr3:60371146-60370972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               125-334
               

               Cow position:
               chr3:7566259-7566461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               125-343
               

               Cow position:
               chr3:13380116-13380328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               125-352
               

               Cow position:
               chr3:9025920-9026150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               21, 134
               

               Conread position:
               131-338
               

               Cow position:
               chr3:74787582-74787382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               166
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               205, 44
               

               Conread position:
               131-347
               

               Cow position:
               chr3:60264565-60264775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               205, 52
               

               Conread position:
               132-298
               

               Cow position:
               chr3:17531581-17531746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               132-334
               

               Cow position:
               chr3:83889404-83889203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               132-334
               

               Cow position:
               chr3:84250394-84250586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               166, 50
               

               Conread position:
               132-339
               

               Cow position:
               chr3:1011647-1011437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               132-341
               

               Cow position:
               chr3:19793435-19793641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               132-352
               

               Cow position:
               chr3:16656330-16656551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               113, 76
               

               Conread position:
               132-352
               

               Cow position:
               chr3:70334537-70334756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               169
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               211, 0
               

               Conread position:
               132-353
               

               Cow position:
               chr3:72745400-72745628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               53, 95
               

               Conread position:
               133-289
               

               Cow position:
               chr3:5737900-5737751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               153, 51
               

               Conread position:
               133-334
               

               Cow position:
               chr3:59828234-59828437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               133-351
               

               Cow position:
               chr3:52608335-52608121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               136-297
               

               Cow position:
               chr3:84174455-84174294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               136-332
               

               Cow position:
               chr3:35624392-35624586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               137-343
               

               Cow position:
               chr3:65413124-65413331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               138-286
               

               Cow position:
               chr3:17039766-17039616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               138-297
               

               Cow position:
               chr3:36411934-36412095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               139-352
               

               Cow position:
               chr3:56704162-56704382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               173
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               39, 211
               

               Conread position:
               143-284
               

               Cow position:
               chr3:42589246-42589104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               143-285
               

               Cow position:
               chr3:24774791-24774658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               143-328
               

               Cow position:
               chr3:4549166-4548990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               143-331
               

               Cow position:
               chr3:5305952-5305757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               158
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               143-352
               

               Cow position:
               chr3:48241754-48241555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               198, 41
               

               Conread position:
               144-297
               

               Cow position:
               chr3:83199656-83199504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               144-302
               

               Cow position:
               chr3:74119285-74119441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               113
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               144-308
               

               Cow position:
               chr3:36190045-36189872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               56, 17
               

               Conread position:
               144-327
               

               Cow position:
               chr3:3947182-3947001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               144-327
               

               Cow position:
               chr3:83770877-83770694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               144-330
               

               Cow position:
               chr3:58452188-58452008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               144-338
               

               Cow position:
               chr3:30940953-30940753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               55, 123
               

               Conread position:
               144-339
               

               Cow position:
               chr3:72391231-72391033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               144-341
               

               Cow position:
               chr3:14801890-14801693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               179, 189
               

               Conread position:
               144-344
               

               Cow position:
               chr3:2484145-2483951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               12, 42
               

               Conread position:
               144-344
               

               Cow position:
               chr3:44102110-44101914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               136, 40
               

               Conread position:
               144-345
               

               Cow position:
               chr3:15159177-15158975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               189, 0
               

               Conread position:
               144-345
               

               Cow position:
               chr3:55010028-55010215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               144-352
               

               Cow position:
               chr3:16505341-16505537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               146-296
               

               Cow position:
               chr3:20911266-20911416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               76, 68
               

               Conread position:
               146-298
               

               Cow position:
               chr3:35582982-35582832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               146-314
               

               Cow position:
               chr3:19788690-19788854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               146-323
               

               Cow position:
               chr3:18326685-18326857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               105, 149
               

               Conread position:
               147-301
               

               Cow position:
               chr3:58010688-58010839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               149-274
               

               Cow position:
               chr3:44622640-44622768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               42, 83
               

               Conread position:
               149-275
               

               Cow position:
               chr3:66639908-66639786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               149-278
               

               Cow position:
               chr3:31896818-31896945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               99
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               149-278
               

               Cow position:
               chr3:66120848-66120720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               149-278
               

               Cow position:
               chr3:83325354-83325224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               149-291
               

               Cow position:
               chr3:40343891-40344031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               149-294
               

               Cow position:
               chr3:31352737-31352879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               149-297
               

               Cow position:
               chr3:27108740-27108896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               44, 128
               

               Conread position:
               149-301
               

               Cow position:
               chr3:25037856-25038003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               149-326
               

               Cow position:
               chr3:15237552-15237727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               42, 102
               

               Conread position:
               149-352
               

               Cow position:
               chr3:14601565-14601773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               125, 36
               

               Conread position:
               150-268
               

               Cow position:
               chr3:19435254-19435138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               93
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               150-331
               

               Cow position:
               chr3:16752117-16752299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               49, 129
               

               Conread position:
               150-343
               

               Cow position:
               chr3:21642133-21641933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               35, 138
               

               Conread position:
               151-351
               

               Cow position:
               chr3:69650753-69650951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               190, 32
               

               Conread position:
               156-341
               

               Cow position:
               chr3:63179991-63179806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               32, 79
               

               Conread position:
               157-330
               

               Cow position:
               chr3:82123420-82123588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               159, 22
               

               Conread position:
               157-341
               

               Cow position:
               chr3:80565094-80564914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               176, 28
               

               Conread position:
               159-352
               

               Cow position:
               chr3:73709175-73708986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               153
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               160-350
               

               Cow position:
               chr3:8733225-8733412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               40, 120
               

               Conread position:
               166-338
               

               Cow position:
               chr3:79645306-79645485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               172-332
               

               Cow position:
               chr3:11716117-11715955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               14, 42
               

               Conread position:
               173-337
               

               Cow position:
               chr3:50614758-50614594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               34, 14
               

               Conread position:
               173-352
               

               Cow position:
               chr3:52863066-52863245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               49, 170
               

               Conread position:
               175-341
               

               Cow position:
               chr3:11606436-11606263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               175-341
               

               Cow position:
               chr3:55984213-55984048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               175-348
               

               Cow position:
               chr3:20515703-20515876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               177-352
               

               Cow position:
               chr3:12711802-12711979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               145
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               164, 0
               

               Conread position:
               178-331
               

               Cow position:
               chr3:17447503-17447653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               178-334
               

               Cow position:
               chr3:17934827-17934982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               178-334
               

               Cow position:
               chr3:77589626-77589475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               178-347
               

               Cow position:
               chr3:16254731-16254891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               178-352
               

               Cow position:
               chr3:61467079-61467254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               158, 23
               

               Conread position:
               178-352
               

               Cow position:
               chr3:70900002-70899831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               178-353
               

               Cow position:
               chr3:28258209-28258033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               23, 57
               

               Conread position:
               179-287
               

               Cow position:
               chr3:12637620-12637512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               89
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               179-297
               

               Cow position:
               chr3:61133749-61133631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               179-343
               

               Cow position:
               chr3:4481053-4480890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               180-344
               

               Cow position:
               chr3:59691998-59691837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               51, 90
               

               Conread position:
               181-331
               

               Cow position:
               chr3:73442987-73443130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               181-334
               

               Cow position:
               chr3:57760607-57760454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               181-347
               

               Cow position:
               chr3:7428107-7427945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               181-352
               

               Cow position:
               chr3:27727723-27727894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               160, 19
               

               Conread position:
               182-350
               

               Cow position:
               chr3:73764092-73764254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               25, 6
               

               Conread position:
               183-333
               

               Cow position:
               chr3:24372028-24371878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               141, 92
               

               Conread position:
               184-330
               

               Cow position:
               chr3:10732997-10732850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               184-352
               

               Cow position:
               chr3:68130184-68130345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               16, 45
               

               Conread position:
               185-309
               

               Cow position:
               chr3:20175153-20175029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               185-334
               

               Cow position:
               chr3:67704651-67704502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               185-341
               

               Cow position:
               chr3:71423450-71423602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               185-352
               

               Cow position:
               chr3:28735408-28735576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               98, 55
               

               Conread position:
               186-298
               

               Cow position:
               chr3:52634211-52634100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               186-334
               

               Cow position:
               chr3:8901733-8901586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               73, 89
               

               Conread position:
               186-334
               

               Cow position:
               chr3:59883964-59884113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               186-344
               

               Cow position:
               chr3:24935468-24935311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               187-331
               

               Cow position:
               chr3:60265151-60265292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               187-339
               

               Cow position:
               chr3:21997685-21997837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               131
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               187-343
               

               Cow position:
               chr3:81470993-81471149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               188-327
               

               Cow position:
               chr3:64648594-64648455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               105
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               188-351
               

               Cow position:
               chr3:57624566-57624404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               189-333
               

               Cow position:
               chr3:20993915-20993771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               31, 131
               

               Conread position:
               190-334
               

               Cow position:
               chr3:19404398-19404259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               10, 18
               

               Conread position:
               191-289
               

               Cow position:
               chr3:76360647-76360745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               99
               

               Alignm identity:
               81
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               191-334
               

               Cow position:
               chr3:82165462-82165612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               37, 15
               

               Conread position:
               191-337
               

               Cow position:
               chr3:67959823-67959963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               191-350
               

               Cow position:
               chr3:70401995-70401836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               148, 91
               

               Conread position:
               191-352
               

               Cow position:
               chr3:82461278-82461118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               192-294
               

               Cow position:
               chr3:27670511-27670409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               103
               

               Alignm identity:
               85
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               192-348
               

               Cow position:
               chr3:58767361-58767205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               192-352
               

               Cow position:
               chr3:39247924-39248084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               66, 156
               

               Conread position:
               193-331
               

               Cow position:
               chr3:3738578-3738442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               193-352
               

               Cow position:
               chr3:4050290-4050133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               153, 118
               

               Conread position:
               193-352
               

               Cow position:
               chr3:27940046-27940200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               194-317
               

               Cow position:
               chr3:22092245-22092122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               194-338
               

               Cow position:
               chr3:60389859-60389715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               142, 7
               

               Conread position:
               194-339
               

               Cow position:
               chr3:28908107-28908252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               194-352
               

               Cow position:
               chr3:17895945-17895781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               6, 49
               

               Conread position:
               195-350
               

               Cow position:
               chr3:10026596-10026745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               197-331
               

               Cow position:
               chr3:26218960-26219092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               197-337
               

               Cow position:
               chr3:58973388-58973249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               197-348
               

               Cow position:
               chr3:8394036-8393879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               202-347
               

               Cow position:
               chr3:11292160-11292305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               202-352
               

               Cow position:
               chr3:79292916-79292767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               204-351
               

               Cow position:
               chr3:38347276-38347133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               211-351
               

               Cow position:
               chr3:5374407-5374272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               211-352
               

               Cow position:
               chr3:72676170-72676029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               133, 127
               

               Conread position:
               211-352
               

               Cow position:
               chr3:74502246-74502387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               125, 136
               

               Conread position:
               211-352
               

               Cow position:
               chr3:80468599-80468737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               212-352
               

               Cow position:
               chr3:81277390-81277532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               213-342
               

               Cow position:
               chr3:61840352-61840227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               231-352
               

               Cow position:
               chr3:45222092-45222217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               99
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               20, 0
               
Show alignments to all cow chromosomes.
Conread position:	91-278
Cow position:	chr3:77098627-77098811 (view UCSC Genome Browser custom track)
Alignm length:	189
Alignm identity:	134
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	27, 94
Conread position:	94-231
Cow position:	chr3:2434545-2434679 (view UCSC Genome Browser custom track)
Alignm length:	138
Alignm identity:	103
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	35, 0
Conread position:	94-347
Cow position:	chr3:33252697-33252946 (view UCSC Genome Browser custom track)
Alignm length:	256
Alignm identity:	180
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	9, 92
Conread position:	96-297
Cow position:	chr3:19709296-19709103 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	142
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	24, 7
Conread position:	96-301
Cow position:	chr3:25735712-25735917 (view UCSC Genome Browser custom track)
Alignm length:	207
Alignm identity:	145
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	119, 126
Conread position:	98-268
Cow position:	chr3:44218956-44218787 (view UCSC Genome Browser custom track)
Alignm length:	172
Alignm identity:	123
Alignm E-value:	3e-23
Alignm gaps (pig, cow):	120, 25
Conread position:	99-352
Cow position:	chr3:56476864-56476617 (view UCSC Genome Browser custom track)
Alignm length:	259
Alignm identity:	191
Alignm E-value:	2e-39
Alignm gaps (pig, cow):	21, 62
Conread position:	101-327
Cow position:	chr3:49363293-49363072 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	168
Alignm E-value:	6e-39
Alignm gaps (pig, cow):	76, 0
Conread position:	102-270
Cow position:	chr3:42484112-42483946 (view UCSC Genome Browser custom track)
Alignm length:	171
Alignm identity:	125
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	143, 41
Conread position:	102-334
Cow position:	chr3:60597723-60597500 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	174
Alignm E-value:	1e-36
Alignm gaps (pig, cow):	16, 83
Conread position:	102-341
Cow position:	chr3:55124100-55124330 (view UCSC Genome Browser custom track)
Alignm length:	240
Alignm identity:	172
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	40, 0
Conread position:	103-301
Cow position:	chr3:20065962-20066165 (view UCSC Genome Browser custom track)
Alignm length:	204
Alignm identity:	142
Alignm E-value:	4e-25
Alignm gaps (pig, cow):	10, 0
Conread position:	104-304
Cow position:	chr3:22675924-22676123 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	145
Alignm E-value:	3e-32
Alignm gaps (pig, cow):	182, 0
Conread position:	104-316
Cow position:	chr3:80023128-80023335 (view UCSC Genome Browser custom track)
Alignm length:	214
Alignm identity:	152
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	136, 16
Conread position:	104-346
Cow position:	chr3:17221950-17222198 (view UCSC Genome Browser custom track)
Alignm length:	249
Alignm identity:	178
Alignm E-value:	2e-37
Alignm gaps (pig, cow):	80, 0
Conread position:	104-352
Cow position:	chr3:4319902-4319650 (view UCSC Genome Browser custom track)
Alignm length:	254
Alignm identity:	186
Alignm E-value:	3.00018e-42
Alignm gaps (pig, cow):	58, 246
Conread position:	106-297
Cow position:	chr3:32436819-32436633 (view UCSC Genome Browser custom track)
Alignm length:	193
Alignm identity:	142
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	43, 105
Conread position:	106-312
Cow position:	chr3:6299639-6299435 (view UCSC Genome Browser custom track)
Alignm length:	207
Alignm identity:	137
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	38, 0
Conread position:	106-331
Cow position:	chr3:15950735-15950954 (view UCSC Genome Browser custom track)
Alignm length:	228
Alignm identity:	173
Alignm E-value:	6e-40
Alignm gaps (pig, cow):	12, 81
Conread position:	106-339
Cow position:	chr3:35153787-35153568 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	164
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	23, 27