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Cow genome map

           
Conread name:
           
rtra22_d15r1.y1
        

               
Conread position:
               
144-531
               

               
Cow position:
               
chr24:13626511-13626141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
151, 35
               

               
Conread position:
               
145-486
               

               
Cow position:
               
chr24:230510-230172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
12, 30
               

               
Conread position:
               
148-478
               

               
Cow position:
               
chr24:37823750-37823432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
148-555
               

               
Cow position:
               
chr24:32204561-32204967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
123, 51
               

               
Conread position:
               
151-517
               

               
Cow position:
               
chr24:23863403-23863769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
144, 167
               

               
Conread position:
               
152-544
               

               
Cow position:
               
chr24:30483718-30484113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
14, 124
               

               
Conread position:
               
153-358
               

               
Cow position:
               
chr24:18811054-18810850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 46
               

               
Conread position:
               
153-512
               

               
Cow position:
               
chr24:34273041-34272682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
17, 275
               

               
Conread position:
               
153-546
               

               
Cow position:
               
chr24:32609872-32609478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
154-376
               

               
Cow position:
               
chr24:22420182-22419961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
158-548
               

               
Cow position:
               
chr24:38347892-38347516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
160-550
               

               
Cow position:
               
chr24:10300289-10299915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
164-547
               

               
Cow position:
               
chr24:6131678-6132038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
164-548
               

               
Cow position:
               
chr24:16089440-16089070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
167-493
               

               
Cow position:
               
chr24:3656159-3656477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 13
               

               
Conread position:
               
167-548
               

               
Cow position:
               
chr24:19465703-19466096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
169-575
               

               
Cow position:
               
chr24:39143818-39143417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
23, 134
               

               
Conread position:
               
170-399
               

               
Cow position:
               
chr24:29677703-29677938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
173-548
               

               
Cow position:
               
chr24:19535053-19535418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
174-486
               

               
Cow position:
               
chr24:43028126-43028430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
176-350
               

               
Cow position:
               
chr24:44896241-44896065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
176-548
               

               
Cow position:
               
chr24:28063148-28062786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 122
               

               
Conread position:
               
177-429
               

               
Cow position:
               
chr24:18750910-18750652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 231
               

               
Conread position:
               
177-546
               

               
Cow position:
               
chr24:6450708-6450332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
15, 198
               

               
Conread position:
               
177-548
               

               
Cow position:
               
chr24:39483660-39483311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
200, 98
               

               
Conread position:
               
178-549
               

               
Cow position:
               
chr24:40301353-40300992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
179-348
               

               
Cow position:
               
chr24:43373255-43373089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
179-358
               

               
Cow position:
               
chr24:20017229-20017409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
179-539
               

               
Cow position:
               
chr24:39290242-39289895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
124, 82
               

               
Conread position:
               
179-548
               

               
Cow position:
               
chr24:21606479-21606827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 175
               

               
Conread position:
               
179-548
               

               
Cow position:
               
chr24:28722075-28721725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
180-357
               

               
Cow position:
               
chr24:36286763-36286589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
180-414
               

               
Cow position:
               
chr24:43155104-43155338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
122, 77
               

               
Conread position:
               
180-476
               

               
Cow position:
               
chr24:13948316-13948027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
119, 54
               

               
Conread position:
               
180-503
               

               
Cow position:
               
chr24:37267859-37267540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
115, 135
               

               
Conread position:
               
180-513
               

               
Cow position:
               
chr24:20594740-20594407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
235, 30
               

               
Conread position:
               
180-547
               

               
Cow position:
               
chr24:10499411-10499049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
100, 19
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr24:15861396-15861767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
27, 256
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr24:22647141-22647508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr24:24490832-24491176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr24:30236065-30235707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 19
               

               
Conread position:
               
180-549
               

               
Cow position:
               
chr24:18344260-18343882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
248, 0
               

               
Conread position:
               
180-555
               

               
Cow position:
               
chr24:28303170-28303525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
181-523
               

               
Cow position:
               
chr24:14550983-14550657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
268, 68
               

               
Conread position:
               
182-481
               

               
Cow position:
               
chr24:11028492-11028784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
7, 121
               

               
Conread position:
               
182-501
               

               
Cow position:
               
chr24:880813-880510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
182-508
               

               
Cow position:
               
chr24:39523258-39523573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
182-546
               

               
Cow position:
               
chr24:27149573-27149233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
337, 6
               

               
Conread position:
               
182-549
               

               
Cow position:
               
chr24:38815166-38814801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
89, 137
               

               
Conread position:
               
183-348
               

               
Cow position:
               
chr24:6007980-6008141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
183-449
               

               
Cow position:
               
chr24:8677015-8676755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
183-548
               

               
Cow position:
               
chr24:21519620-21519271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
305, 16
               

               
Conread position:
               
184-358
               

               
Cow position:
               
chr24:16641104-16640929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
184-545
               

               
Cow position:
               
chr24:35985541-35985886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
184-546
               

               
Cow position:
               
chr24:28990752-28990400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
97, 110
               

               
Conread position:
               
184-548
               

               
Cow position:
               
chr24:5142130-5141778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
184-548
               

               
Cow position:
               
chr24:11840373-11840012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
312, 15
               

               
Conread position:
               
184-548
               

               
Cow position:
               
chr24:42825324-42825660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
184-549
               

               
Cow position:
               
chr24:27844344-27844687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
186-548
               

               
Cow position:
               
chr24:18356870-18357219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
186-555
               

               
Cow position:
               
chr24:17860074-17860428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
187-513
               

               
Cow position:
               
chr24:28234229-28233918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
188-525
               

               
Cow position:
               
chr24:27040235-27039908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
188-548
               

               
Cow position:
               
chr24:352418-352771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
188-548
               

               
Cow position:
               
chr24:11887341-11886995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
188-548
               

               
Cow position:
               
chr24:18484805-18485163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 125
               

               
Conread position:
               
188-548
               

               
Cow position:
               
chr24:19000229-18999881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
101, 117
               

               
Conread position:
               
188-548
               

               
Cow position:
               
chr24:27607927-27608264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
188-548
               

               
Cow position:
               
chr24:30229659-30229305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
113, 11
               

               
Conread position:
               
188-555
               

               
Cow position:
               
chr24:31159816-31159444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 198
               

               
Conread position:
               
189-538
               

               
Cow position:
               
chr24:27219903-27220247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
330, 115
               

               
Conread position:
               
189-548
               

               
Cow position:
               
chr24:18731925-18732289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
246, 9
               

               
Conread position:
               
190-350
               

               
Cow position:
               
chr24:2261853-2261694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
190-358
               

               
Cow position:
               
chr24:43445827-43445995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 104
               

               
Conread position:
               
190-470
               

               
Cow position:
               
chr24:27285008-27284732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 166
               

               
Conread position:
               
190-545
               

               
Cow position:
               
chr24:29587184-29586830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
201, 59
               

               
Conread position:
               
190-548
               

               
Cow position:
               
chr24:16995062-16994720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
193, 91
               

               
Conread position:
               
191-358
               

               
Cow position:
               
chr24:12121082-12120915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
191-430
               

               
Cow position:
               
chr24:19730965-19730726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
104, 125
               

               
Conread position:
               
191-474
               

               
Cow position:
               
chr24:23574976-23575249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
225, 0
               

               
Conread position:
               
191-507
               

               
Cow position:
               
chr24:28061043-28060716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
191-544
               

               
Cow position:
               
chr24:35332911-35332556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
111, 129
               

               
Conread position:
               
191-548
               

               
Cow position:
               
chr24:31812366-31812022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
295, 7
               

               
Conread position:
               
191-548
               

               
Cow position:
               
chr24:33621295-33621650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
224, 264
               

               
Conread position:
               
192-436
               

               
Cow position:
               
chr24:5360893-5360659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
223, 80
               

               
Conread position:
               
192-479
               

               
Cow position:
               
chr24:39910849-39911134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
174, 122
               

               
Conread position:
               
192-533
               

               
Cow position:
               
chr24:37395025-37395359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
71, 109
               

               
Conread position:
               
192-548
               

               
Cow position:
               
chr24:27906620-27906272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 54
               

               
Conread position:
               
192-552
               

               
Cow position:
               
chr24:16510154-16509800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
197-548
               

               
Cow position:
               
chr24:31359495-31359160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
199-349
               

               
Cow position:
               
chr24:38693702-38693851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
199-358
               

               
Cow position:
               
chr24:25947684-25947843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
84, 67
               

               
Conread position:
               
199-358
               

               
Cow position:
               
chr24:27066405-27066249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
199-480
               

               
Cow position:
               
chr24:28600263-28600537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
109, 28
               

               
Conread position:
               
199-497
               

               
Cow position:
               
chr24:37974808-37975096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
199-513
               

               
Cow position:
               
chr24:29605858-29606174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
88, 28
               

               
Conread position:
               
199-523
               

               
Cow position:
               
chr24:42103536-42103235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
199-524
               

               
Cow position:
               
chr24:390275-389959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
229, 76
               

               
Conread position:
               
199-545
               

               
Cow position:
               
chr24:22689398-22689745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 116
               

               
Conread position:
               
199-546
               

               
Cow position:
               
chr24:212145-211821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
53, 48
               

               
Conread position:
               
199-546
               

               
Cow position:
               
chr24:36403981-36404308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
199-547
               

               
Cow position:
               
chr24:3494056-3493727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
199-547
               

               
Cow position:
               
chr24:28496408-28496748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr24:2402202-2402540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
176, 45
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr24:17311054-17311375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr24:18474554-18474911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
85, 90
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr24:19179261-19179613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
300, 118
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr24:19801014-19800680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
176, 76
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr24:25194441-25194103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
80, 98
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr24:33098297-33098658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
211, 84
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr24:34742924-34742589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
192, 27
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr24:41980485-41980835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
278, 81
               

               
Conread position:
               
199-549
               

               
Cow position:
               
chr24:32693895-32693539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
101, 19
               

               
Conread position:
               
199-549
               

               
Cow position:
               
chr24:41423770-41423442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
195, 11
               

               
Conread position:
               
199-552
               

               
Cow position:
               
chr24:7914184-7913832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
100, 121
               

               
Conread position:
               
199-555
               

               
Cow position:
               
chr24:20801170-20801520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
316, 87
               

               
Conread position:
               
199-555
               

               
Cow position:
               
chr24:43371418-43371074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
200-358
               

               
Cow position:
               
chr24:18874646-18874802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
200-529
               

               
Cow position:
               
chr24:39849718-39850031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
201-545
               

               
Cow position:
               
chr24:24755602-24755283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
236, 25
               

               
Conread position:
               
201-548
               

               
Cow position:
               
chr24:33944579-33944238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
86, 172
               

               
Conread position:
               
202-362
               

               
Cow position:
               
chr24:3193099-3193258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
203-367
               

               
Cow position:
               
chr24:5152697-5152533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
203-469
               

               
Cow position:
               
chr24:2992709-2992965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
203-470
               

               
Cow position:
               
chr24:15288998-15288732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
227, 69
               

               
Conread position:
               
203-513
               

               
Cow position:
               
chr24:27713239-27713535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
203-544
               

               
Cow position:
               
chr24:30313858-30314194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
98, 69
               

               
Conread position:
               
203-545
               

               
Cow position:
               
chr24:37038062-37037736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
159, 72
               

               
Conread position:
               
203-548
               

               
Cow position:
               
chr24:1269948-1269632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
224, 69
               

               
Conread position:
               
203-548
               

               
Cow position:
               
chr24:17104401-17104736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
203-548
               

               
Cow position:
               
chr24:24457071-24457412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
203-548
               

               
Cow position:
               
chr24:28553401-28553713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
203-548
               

               
Cow position:
               
chr24:29595629-29595977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 126
               

               
Conread position:
               
203-549
               

               
Cow position:
               
chr24:37650846-37650503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
63, 130
               

               
Conread position:
               
204-555
               

               
Cow position:
               
chr24:17407561-17407218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
319, 110
               

               
Conread position:
               
205-502
               

               
Cow position:
               
chr24:43832691-43832402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
234, 67
               

               
Conread position:
               
209-533
               

               
Cow position:
               
chr24:17751943-17752264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
71, 102
               

               
Conread position:
               
209-548
               

               
Cow position:
               
chr24:40130301-40129956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
210-509
               

               
Cow position:
               
chr24:29561415-29561701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
210-547
               

               
Cow position:
               
chr24:44987208-44987548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 214
               

               
Conread position:
               
211-429
               

               
Cow position:
               
chr24:41916420-41916201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
148, 64
               

               
Conread position:
               
213-436
               

               
Cow position:
               
chr24:6742386-6742162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
213-485
               

               
Cow position:
               
chr24:28342523-28342247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 150
               

               
Conread position:
               
213-529
               

               
Cow position:
               
chr24:36008647-36008338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
306, 31
               

               
Conread position:
               
213-548
               

               
Cow position:
               
chr24:18741404-18741737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 219
               

               
Conread position:
               
213-548
               

               
Cow position:
               
chr24:31036499-31036187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
114, 7
               

               
Conread position:
               
213-548
               

               
Cow position:
               
chr24:31816736-31816423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
214-548
               

               
Cow position:
               
chr24:23556177-23556493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
129, 58
               

               
Conread position:
               
215-548
               

               
Cow position:
               
chr24:44040852-44041179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
220, 57
               

               
Conread position:
               
224-548
               

               
Cow position:
               
chr24:17294045-17294358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
295, 139
               

               
Conread position:
               
227-547
               

               
Cow position:
               
chr24:29782311-29781999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
65, 51
               

               
Conread position:
               
227-556
               

               
Cow position:
               
chr24:16645171-16645503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
88, 50
               

               
Conread position:
               
228-544
               

               
Cow position:
               
chr24:20943306-20943005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
231-548
               

               
Cow position:
               
chr24:12200264-12200579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
233-548
               

               
Cow position:
               
chr24:35576394-35576701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
234-548
               

               
Cow position:
               
chr24:20874820-20874514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
237-548
               

               
Cow position:
               
chr24:42344857-42345171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
66, 83
               

               
Conread position:
               
237-552
               

               
Cow position:
               
chr24:26554457-26554771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
282, 195
               

               
Conread position:
               
238-548
               

               
Cow position:
               
chr24:17832684-17832980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
281, 45
               

               
Conread position:
               
241-547
               

               
Cow position:
               
chr24:27725878-27726178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
241-548
               

               
Cow position:
               
chr24:18024836-18025134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
41, 121
               

               
Conread position:
               
243-548
               

               
Cow position:
               
chr24:23186786-23187083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
252-548
               

               
Cow position:
               
chr24:6102954-6102658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
22, 110
               

               
Conread position:
               
261-550
               

               
Cow position:
               
chr24:18017343-18017059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
257, 170
               

               
Conread position:
               
265-540
               

               
Cow position:
               
chr24:34008461-34008736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
253, 166
               

               
Conread position:
               
265-548
               

               
Cow position:
               
chr24:15373517-15373243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
270, 151
               

               
Conread position:
               
268-555
               

               
Cow position:
               
chr24:43200167-43200449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
168, 32
               

               
Conread position:
               
276-548
               

               
Cow position:
               
chr24:24250823-24250562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
277-548
               

               
Cow position:
               
chr24:33153877-33153611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 111
               

               
Conread position:
               
283-547
               

               
Cow position:
               
chr24:43683369-43683637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 146
               

               
Conread position:
               
283-548
               

               
Cow position:
               
chr24:28253813-28253540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 171
               

               
Conread position:
               
283-549
               

               
Cow position:
               
chr24:5754929-5754671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
283-552
               

               
Cow position:
               
chr24:29063565-29063818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
284-544
               

               
Cow position:
               
chr24:5683372-5683116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
284-545
               

               
Cow position:
               
chr24:17955352-17955606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
233, 81
               

               
Conread position:
               
285-546
               

               
Cow position:
               
chr24:27290963-27290704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
234, 147
               

               
Conread position:
               
285-548
               

               
Cow position:
               
chr24:32071053-32070800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
88, 75
               

               
Conread position:
               
285-555
               

               
Cow position:
               
chr24:18970416-18970681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
90, 79
               

               
Conread position:
               
290-546
               

               
Cow position:
               
chr24:29673608-29673355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
229, 26
               

               
Conread position:
               
290-548
               

               
Cow position:
               
chr24:27824549-27824292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
75, 85
               

               
Conread position:
               
290-555
               

               
Cow position:
               
chr24:28326994-28327257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
150, 113
               

               
Conread position:
               
297-507
               

               
Cow position:
               
chr24:39791621-39791414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
297-547
               

               
Cow position:
               
chr24:31324364-31324116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
197, 32
               

               
Conread position:
               
297-548
               

               
Cow position:
               
chr24:3430813-3430568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
299-546
               

               
Cow position:
               
chr24:32369837-32370083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
90, 128
               

               
Conread position:
               
300-545
               

               
Cow position:
               
chr24:19736257-19736490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
300-548
               

               
Cow position:
               
chr24:16895360-16895602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
309-546
               

               
Cow position:
               
chr24:30897469-30897702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
310-546
               

               
Cow position:
               
chr24:201570-201798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
124, 146
               

               
Conread position:
               
312-538
               

               
Cow position:
               
chr24:39159485-39159702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
49, 63
               

               
Conread position:
               
313-548
               

               
Cow position:
               
chr24:43432854-43432626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
57, 47
               

               
Conread position:
               
318-548
               

               
Cow position:
               
chr24:33221880-33222108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
319-544
               

               
Cow position:
               
chr24:15707387-15707605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 42
               

               
Conread position:
               
326-548
               

               
Cow position:
               
chr24:27340968-27341186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
332-538
               

               
Cow position:
               
chr24:32054706-32054503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
335-548
               

               
Cow position:
               
chr24:20249854-20250066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
80, 87
               

               
Conread position:
               
341-548
               

               
Cow position:
               
chr24:20024649-20024445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
176, 75
               

               
Conread position:
               
364-548
               

               
Cow position:
               
chr24:36554821-36554998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
373-548
               

               
Cow position:
               
chr24:6487923-6487757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
374-548
               

               
Cow position:
               
chr24:35794732-35794902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
374-549
               

               
Cow position:
               
chr24:27052491-27052662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
145, 57
               

               
Conread position:
               
376-546
               

               
Cow position:
               
chr24:42007741-42007575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
379-548
               

               
Cow position:
               
chr24:18405313-18405483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 124
               

               
Conread position:
               
379-548
               

               
Cow position:
               
chr24:39218844-39219009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
101, 7
               

               
Conread position:
               
381-547
               

               
Cow position:
               
chr24:19634069-19633908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
387-555
               

               
Cow position:
               
chr24:885698-885859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
388-523
               

               
Cow position:
               
chr24:31382890-31382756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
391-548
               

               
Cow position:
               
chr24:7917375-7917531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
393-548
               

               
Cow position:
               
chr24:29028025-29027878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
395-548
               

               
Cow position:
               
chr24:11876870-11876719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
396-548
               

               
Cow position:
               
chr24:14171708-14171860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
403-545
               

               
Cow position:
               
chr24:5152210-5152071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
110, 12
               

               
Conread position:
               
403-548
               

               
Cow position:
               
chr24:27968058-27967912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
426-546
               

               
Cow position:
               
chr24:25525003-25524885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
426-555
               

               
Cow position:
               
chr24:35074049-35073918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
432-548
               

               
Cow position:
               
chr24:27719806-27719921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
442-548
               

               
Cow position:
               
chr24:18695560-18695453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               
Show alignments to all cow chromosomes.