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Cow genome map

           
Conread name:
           
rtra22_d15r1.y1
        

               
Conread position:
               
142-419
               

               
Cow position:
               
chr5:2240707-2240981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
142-549
               

               
Cow position:
               
chr5:17999212-17999612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
8, 121
               

               
Conread position:
               
147-546
               

               
Cow position:
               
chr5:35969817-35969428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
127, 52
               

               
Conread position:
               
150-555
               

               
Cow position:
               
chr5:74610422-74610814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
26, 173
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr5:57398980-57399173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
151-493
               

               
Cow position:
               
chr5:20994816-20995156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
153-355
               

               
Cow position:
               
chr5:51012270-51012071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
169, 41
               

               
Conread position:
               
153-356
               

               
Cow position:
               
chr5:55783689-55783892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
156-427
               

               
Cow position:
               
chr5:61049603-61049332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
156-490
               

               
Cow position:
               
chr5:63241250-63240918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 284
               

               
Conread position:
               
156-548
               

               
Cow position:
               
chr5:30303156-30302777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
157-548
               

               
Cow position:
               
chr5:24349384-24348991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
11, 281
               

               
Conread position:
               
159-480
               

               
Cow position:
               
chr5:45405313-45404993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 272
               

               
Conread position:
               
163-429
               

               
Cow position:
               
chr5:74039740-74040005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
168-358
               

               
Cow position:
               
chr5:19052534-19052723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
168-546
               

               
Cow position:
               
chr5:35208521-35208152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 204
               

               
Conread position:
               
170-400
               

               
Cow position:
               
chr5:49821686-49821455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
171-350
               

               
Cow position:
               
chr5:59958420-59958251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
172-433
               

               
Cow position:
               
chr5:15364528-15364263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 6
               

               
Conread position:
               
174-523
               

               
Cow position:
               
chr5:15479379-15479035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
174-548
               

               
Cow position:
               
chr5:56014971-56014618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
174-548
               

               
Cow position:
               
chr5:65753109-65752740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
82, 42
               

               
Conread position:
               
175-429
               

               
Cow position:
               
chr5:30562180-30561930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
175-538
               

               
Cow position:
               
chr5:50858185-50857831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
120, 22
               

               
Conread position:
               
177-440
               

               
Cow position:
               
chr5:52853214-52852959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
177-536
               

               
Cow position:
               
chr5:12557037-12557396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
177-547
               

               
Cow position:
               
chr5:47602052-47601704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
180, 19
               

               
Conread position:
               
177-547
               

               
Cow position:
               
chr5:72902995-72903347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
316, 21
               

               
Conread position:
               
177-548
               

               
Cow position:
               
chr5:16214926-16214571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
177-548
               

               
Cow position:
               
chr5:44446627-44446984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 93
               

               
Conread position:
               
177-548
               

               
Cow position:
               
chr5:46512521-46512879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
102, 22
               

               
Conread position:
               
178-548
               

               
Cow position:
               
chr5:18289364-18289013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
178-548
               

               
Cow position:
               
chr5:57101550-57101892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
147, 49
               

               
Conread position:
               
178-551
               

               
Cow position:
               
chr5:33560487-33560853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 107
               

               
Conread position:
               
179-349
               

               
Cow position:
               
chr5:57086815-57086985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
179-350
               

               
Cow position:
               
chr5:15770206-15770379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
179-350
               

               
Cow position:
               
chr5:58487618-58487452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
179-351
               

               
Cow position:
               
chr5:56624266-56624441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
179-414
               

               
Cow position:
               
chr5:17828229-17828466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chr5:57686503-57686777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
249, 20
               

               
Conread position:
               
179-494
               

               
Cow position:
               
chr5:20843149-20843462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
179-539
               

               
Cow position:
               
chr5:43370949-43371305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
124, 16
               

               
Conread position:
               
179-546
               

               
Cow position:
               
chr5:4280686-4280347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
180, 18
               

               
Conread position:
               
179-546
               

               
Cow position:
               
chr5:11426990-11427352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
342, 48
               

               
Conread position:
               
179-546
               

               
Cow position:
               
chr5:51053402-51053762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
242, 100
               

               
Conread position:
               
179-548
               

               
Cow position:
               
chr5:69338060-69337713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr5:3282083-3281694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
124, 139
               

               
Conread position:
               
180-358
               

               
Cow position:
               
chr5:57447418-57447597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
180-358
               

               
Cow position:
               
chr5:62996204-62996026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
180-425
               

               
Cow position:
               
chr5:12300157-12299913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
180-429
               

               
Cow position:
               
chr5:60514779-60515030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 164
               

               
Conread position:
               
180-436
               

               
Cow position:
               
chr5:62812074-62811813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
180-465
               

               
Cow position:
               
chr5:26548896-26549175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 97
               

               
Conread position:
               
180-465
               

               
Cow position:
               
chr5:33273941-33273657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
180-477
               

               
Cow position:
               
chr5:52001380-52001666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
180-483
               

               
Cow position:
               
chr5:30419219-30418923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
135, 47
               

               
Conread position:
               
180-494
               

               
Cow position:
               
chr5:43604385-43604081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 121
               

               
Conread position:
               
180-521
               

               
Cow position:
               
chr5:3772085-3771759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
180-530
               

               
Cow position:
               
chr5:64555775-64555432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
115, 19
               

               
Conread position:
               
180-540
               

               
Cow position:
               
chr5:36868981-36868631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr5:12149795-12149426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr5:12322567-12322917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr5:16893533-16893888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr5:19335532-19335903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 254
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr5:29097606-29097243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
197, 19
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr5:39937359-39936986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 18
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr5:45409570-45409207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
123, 140
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr5:55177125-55176774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
256, 61
               

               
Conread position:
               
180-548
               

               
Cow position:
               
chr5:66582218-66581847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
20, 136
               

               
Conread position:
               
180-549
               

               
Cow position:
               
chr5:2309312-2309677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
180-555
               

               
Cow position:
               
chr5:32153067-32153438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
180-596
               

               
Cow position:
               
chr5:40889051-40889448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
339, 19
               

               
Conread position:
               
181-348
               

               
Cow position:
               
chr5:26149280-26149113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
181-414
               

               
Cow position:
               
chr5:64060689-64060459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
186, 18
               

               
Conread position:
               
181-469
               

               
Cow position:
               
chr5:50101132-50101415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
181-523
               

               
Cow position:
               
chr5:50576012-50575694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
181-533
               

               
Cow position:
               
chr5:5751361-5751722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 285
               

               
Conread position:
               
181-546
               

               
Cow position:
               
chr5:53855961-53855580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
91, 7
               

               
Conread position:
               
181-548
               

               
Cow position:
               
chr5:35246861-35247226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 235
               

               
Conread position:
               
181-548
               

               
Cow position:
               
chr5:41009768-41010109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
244, 17
               

               
Conread position:
               
181-548
               

               
Cow position:
               
chr5:42845355-42845722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
151, 17
               

               
Conread position:
               
181-548
               

               
Cow position:
               
chr5:44796489-44796846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
181-548
               

               
Cow position:
               
chr5:44993792-44994154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
24, 190
               

               
Conread position:
               
181-548
               

               
Cow position:
               
chr5:53055314-53055676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
11, 250
               

               
Conread position:
               
181-548
               

               
Cow position:
               
chr5:61576790-61576425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
122, 37
               

               
Conread position:
               
182-339
               

               
Cow position:
               
chr5:74050068-74049912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
182-350
               

               
Cow position:
               
chr5:54341008-54340843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
182-350
               

               
Cow position:
               
chr5:55949433-55949602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
18, 103
               

               
Conread position:
               
182-397
               

               
Cow position:
               
chr5:62011925-62011713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
182-494
               

               
Cow position:
               
chr5:7012606-7012910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
182-506
               

               
Cow position:
               
chr5:41935409-41935731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 152
               

               
Conread position:
               
182-541
               

               
Cow position:
               
chr5:63647233-63647584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
182-547
               

               
Cow position:
               
chr5:16025240-16025572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
182-548
               

               
Cow position:
               
chr5:21829104-21828750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
183-529
               

               
Cow position:
               
chr5:42064450-42064106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 248
               

               
Conread position:
               
183-533
               

               
Cow position:
               
chr5:36038763-36039105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
164, 64
               

               
Conread position:
               
183-548
               

               
Cow position:
               
chr5:1247507-1247160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
183-548
               

               
Cow position:
               
chr5:34505683-34506042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
139, 16
               

               
Conread position:
               
183-548
               

               
Cow position:
               
chr5:35826836-35826487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
183-549
               

               
Cow position:
               
chr5:56028303-56028644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
184-525
               

               
Cow position:
               
chr5:33834281-33833951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
184-546
               

               
Cow position:
               
chr5:49474313-49474659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
179, 88
               

               
Conread position:
               
184-548
               

               
Cow position:
               
chr5:45472514-45472152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
166, 15
               

               
Conread position:
               
184-548
               

               
Cow position:
               
chr5:72895929-72895572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 114
               

               
Conread position:
               
185-548
               

               
Cow position:
               
chr5:43922931-43923264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
256, 73
               

               
Conread position:
               
185-548
               

               
Cow position:
               
chr5:64140777-64140414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
203, 14
               

               
Conread position:
               
186-444
               

               
Cow position:
               
chr5:17105085-17104835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
186-547
               

               
Cow position:
               
chr5:56071096-56070741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 24
               

               
Conread position:
               
186-548
               

               
Cow position:
               
chr5:5257048-5257408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 97
               

               
Conread position:
               
186-549
               

               
Cow position:
               
chr5:42050783-42050434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
187-357
               

               
Cow position:
               
chr5:29599314-29599476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
187-548
               

               
Cow position:
               
chr5:66972668-66972311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
98, 54
               

               
Conread position:
               
188-413
               

               
Cow position:
               
chr5:44196693-44196915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
188-465
               

               
Cow position:
               
chr5:8736040-8736323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
104, 165
               

               
Conread position:
               
188-499
               

               
Cow position:
               
chr5:14344858-14345162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
15, 133
               

               
Conread position:
               
188-509
               

               
Cow position:
               
chr5:57755797-57756108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
188-512
               

               
Cow position:
               
chr5:61914807-61914490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
188-544
               

               
Cow position:
               
chr5:60016399-60016055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
188-546
               

               
Cow position:
               
chr5:43858181-43858546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
187, 170
               

               
Conread position:
               
188-548
               

               
Cow position:
               
chr5:30276924-30276581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
188-548
               

               
Cow position:
               
chr5:45225581-45225941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
23, 86
               

               
Conread position:
               
188-548
               

               
Cow position:
               
chr5:47316737-47317087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
188-548
               

               
Cow position:
               
chr5:57934883-57935225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
189-358
               

               
Cow position:
               
chr5:43611935-43611767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
189-434
               

               
Cow position:
               
chr5:52138174-52137928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
177, 66
               

               
Conread position:
               
189-529
               

               
Cow position:
               
chr5:30233145-30232802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
112, 21
               

               
Conread position:
               
189-544
               

               
Cow position:
               
chr5:32338725-32339076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
65, 26
               

               
Conread position:
               
189-548
               

               
Cow position:
               
chr5:70951656-70951992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 88
               

               
Conread position:
               
189-555
               

               
Cow position:
               
chr5:44847791-44848149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
199, 83
               

               
Conread position:
               
190-383
               

               
Cow position:
               
chr5:24915290-24915483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
190-518
               

               
Cow position:
               
chr5:32394837-32394515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 91
               

               
Conread position:
               
190-548
               

               
Cow position:
               
chr5:26467862-26467507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
174, 38
               

               
Conread position:
               
190-548
               

               
Cow position:
               
chr5:28302521-28302856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
197, 37
               

               
Conread position:
               
190-548
               

               
Cow position:
               
chr5:65967503-65967844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
191-483
               

               
Cow position:
               
chr5:37255099-37255389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
104, 124
               

               
Conread position:
               
191-521
               

               
Cow position:
               
chr5:57526693-57527007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
191-544
               

               
Cow position:
               
chr5:48154229-48154589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
112, 129
               

               
Conread position:
               
191-547
               

               
Cow position:
               
chr5:55942142-55942511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
21, 278
               

               
Conread position:
               
191-548
               

               
Cow position:
               
chr5:30178268-30178626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
99, 124
               

               
Conread position:
               
191-548
               

               
Cow position:
               
chr5:44049934-44049582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
112, 129
               

               
Conread position:
               
192-548
               

               
Cow position:
               
chr5:24995989-24996339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
101, 7
               

               
Conread position:
               
192-555
               

               
Cow position:
               
chr5:35459063-35459417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
158, 79
               

               
Conread position:
               
193-429
               

               
Cow position:
               
chr5:46540828-46541057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
195, 82
               

               
Conread position:
               
198-549
               

               
Cow position:
               
chr5:8023988-8024312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
321, 36
               

               
Conread position:
               
199-350
               

               
Cow position:
               
chr5:45854727-45854574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
199-358
               

               
Cow position:
               
chr5:34347507-34347665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
199-367
               

               
Cow position:
               
chr5:59662831-59662998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
199-400
               

               
Cow position:
               
chr5:34288028-34288223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
199-493
               

               
Cow position:
               
chr5:60952888-60952595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 121
               

               
Conread position:
               
199-494
               

               
Cow position:
               
chr5:59626746-59627036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
199-505
               

               
Cow position:
               
chr5:11769498-11769196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
86, 174
               

               
Conread position:
               
199-511
               

               
Cow position:
               
chr5:19752527-19752226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
255, 67
               

               
Conread position:
               
199-520
               

               
Cow position:
               
chr5:43403135-43402812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 113
               

               
Conread position:
               
199-523
               

               
Cow position:
               
chr5:5856086-5855777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 89
               

               
Conread position:
               
199-524
               

               
Cow position:
               
chr5:25366325-25365999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
180, 27
               

               
Conread position:
               
199-534
               

               
Cow position:
               
chr5:22242548-22242876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
152, 55
               

               
Conread position:
               
199-539
               

               
Cow position:
               
chr5:57767762-57768090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
250, 28
               

               
Conread position:
               
199-544
               

               
Cow position:
               
chr5:9893899-9894241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
274, 34
               

               
Conread position:
               
199-545
               

               
Cow position:
               
chr5:47756998-47756659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
316, 91
               

               
Conread position:
               
199-546
               

               
Cow position:
               
chr5:11667958-11668300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
268, 68
               

               
Conread position:
               
199-546
               

               
Cow position:
               
chr5:34976614-34976960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
99, 11
               

               
Conread position:
               
199-546
               

               
Cow position:
               
chr5:35685159-35684824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
61, 27
               

               
Conread position:
               
199-546
               

               
Cow position:
               
chr5:45845464-45845806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
124, 76
               

               
Conread position:
               
199-546
               

               
Cow position:
               
chr5:52164947-52165293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 128
               

               
Conread position:
               
199-547
               

               
Cow position:
               
chr5:12902145-12901800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
176, 161
               

               
Conread position:
               
199-547
               

               
Cow position:
               
chr5:30628927-30629273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
88, 113
               

               
Conread position:
               
199-547
               

               
Cow position:
               
chr5:74643458-74643786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr5:7057171-7057522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
87, 151
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr5:14550356-14550698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
318, 232
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr5:21617681-21617342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
228, 73
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr5:25035028-25035359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 161
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr5:28224668-28224336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
320, 72
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr5:34562235-34561896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
185, 53
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr5:47870828-47871163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
279, 47
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr5:64321988-64321637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 83
               

               
Conread position:
               
199-548
               

               
Cow position:
               
chr5:65941024-65941366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
199-549
               

               
Cow position:
               
chr5:7044480-7044824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
200-470
               

               
Cow position:
               
chr5:20288033-20288302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
112, 242
               

               
Conread position:
               
200-475
               

               
Cow position:
               
chr5:69099944-69099675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 75
               

               
Conread position:
               
200-530
               

               
Cow position:
               
chr5:59384461-59384791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
200-546
               

               
Cow position:
               
chr5:38833339-38833009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
200-546
               

               
Cow position:
               
chr5:55756188-55756545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 95
               

               
Conread position:
               
200-548
               

               
Cow position:
               
chr5:11229446-11229785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 44
               

               
Conread position:
               
200-548
               

               
Cow position:
               
chr5:19278478-19278816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
87, 111
               

               
Conread position:
               
200-548
               

               
Cow position:
               
chr5:35235462-35235825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
169, 318
               

               
Conread position:
               
200-549
               

               
Cow position:
               
chr5:55966648-55966996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 115
               

               
Conread position:
               
201-490
               

               
Cow position:
               
chr5:61456071-61455787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 74
               

               
Conread position:
               
201-541
               

               
Cow position:
               
chr5:14920702-14921039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
61, 90
               

               
Conread position:
               
201-544
               

               
Cow position:
               
chr5:39447301-39447642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 249
               

               
Conread position:
               
201-546
               

               
Cow position:
               
chr5:14314740-14314411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
201-546
               

               
Cow position:
               
chr5:40109708-40109385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
201-547
               

               
Cow position:
               
chr5:30253964-30253626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
201-548
               

               
Cow position:
               
chr5:12760896-12761232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
165, 89
               

               
Conread position:
               
201-548
               

               
Cow position:
               
chr5:53835945-53835598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
69, 143
               

               
Conread position:
               
201-556
               

               
Cow position:
               
chr5:66339297-66338955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 64
               

               
Conread position:
               
202-358
               

               
Cow position:
               
chr5:19561223-19561379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
202-548
               

               
Cow position:
               
chr5:62172621-62172300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
202-549
               

               
Cow position:
               
chr5:11539829-11540165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
95, 124
               

               
Conread position:
               
203-429
               

               
Cow position:
               
chr5:69383473-69383253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
203-546
               

               
Cow position:
               
chr5:41165304-41164974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
203-548
               

               
Cow position:
               
chr5:30487449-30487120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 120
               

               
Conread position:
               
203-548
               

               
Cow position:
               
chr5:49440630-49440988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 261
               

               
Conread position:
               
203-548
               

               
Cow position:
               
chr5:66257856-66257523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
203-549
               

               
Cow position:
               
chr5:29828270-29827932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
184, 116
               

               
Conread position:
               
204-546
               

               
Cow position:
               
chr5:65776156-65776496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
58, 48
               

               
Conread position:
               
204-548
               

               
Cow position:
               
chr5:22667291-22666977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 71
               

               
Conread position:
               
205-547
               

               
Cow position:
               
chr5:67932246-67932579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 160
               

               
Conread position:
               
205-552
               

               
Cow position:
               
chr5:55956130-55955789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 72
               

               
Conread position:
               
206-548
               

               
Cow position:
               
chr5:20779180-20779502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
206-548
               

               
Cow position:
               
chr5:50600265-50599940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
145, 69
               

               
Conread position:
               
209-548
               

               
Cow position:
               
chr5:30845322-30844997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
209-555
               

               
Cow position:
               
chr5:47696244-47696565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
209-558
               

               
Cow position:
               
chr5:59395880-59395535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
148, 213
               

               
Conread position:
               
210-521
               

               
Cow position:
               
chr5:17554820-17555120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
159, 65
               

               
Conread position:
               
210-538
               

               
Cow position:
               
chr5:17062864-17063196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
169, 203
               

               
Conread position:
               
210-547
               

               
Cow position:
               
chr5:14903851-14904191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
210-548
               

               
Cow position:
               
chr5:12673265-12673578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
211-548
               

               
Cow position:
               
chr5:34050322-34049995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
308, 101
               

               
Conread position:
               
213-397
               

               
Cow position:
               
chr5:53980540-53980724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
213-476
               

               
Cow position:
               
chr5:72006285-72006537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
213-503
               

               
Cow position:
               
chr5:63234611-63234897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
54, 176
               

               
Conread position:
               
213-504
               

               
Cow position:
               
chr5:34108845-34109131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
213-537
               

               
Cow position:
               
chr5:53947111-53946790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 147
               

               
Conread position:
               
213-538
               

               
Cow position:
               
chr5:31475896-31475575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
302, 203
               

               
Conread position:
               
213-546
               

               
Cow position:
               
chr5:29352920-29353242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
215, 62
               

               
Conread position:
               
213-548
               

               
Cow position:
               
chr5:26097502-26097179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
305, 77
               

               
Conread position:
               
213-548
               

               
Cow position:
               
chr5:45397777-45397462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
213-549
               

               
Cow position:
               
chr5:33414196-33414530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 86
               

               
Conread position:
               
214-548
               

               
Cow position:
               
chr5:5110848-5111189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
214-548
               

               
Cow position:
               
chr5:20128265-20127940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
305, 216
               

               
Conread position:
               
215-533
               

               
Cow position:
               
chr5:64523654-64523968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
215-540
               

               
Cow position:
               
chr5:52040111-52040427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
303, 196
               

               
Conread position:
               
216-413
               

               
Cow position:
               
chr5:16939383-16939580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
216-492
               

               
Cow position:
               
chr5:59330530-59330808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 75
               

               
Conread position:
               
217-538
               

               
Cow position:
               
chr5:64168029-64168346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
86, 103
               

               
Conread position:
               
220-471
               

               
Cow position:
               
chr5:49501613-49501864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
63, 220
               

               
Conread position:
               
220-543
               

               
Cow position:
               
chr5:57419591-57419904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
155, 58
               

               
Conread position:
               
222-548
               

               
Cow position:
               
chr5:48829358-48829042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 64
               

               
Conread position:
               
222-552
               

               
Cow position:
               
chr5:64697991-64697664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 140
               

               
Conread position:
               
222-596
               

               
Cow position:
               
chr5:6503673-6504044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 209
               

               
Conread position:
               
223-544
               

               
Cow position:
               
chr5:64137460-64137139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 97
               

               
Conread position:
               
224-548
               

               
Cow position:
               
chr5:47703924-47704246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 92
               

               
Conread position:
               
229-548
               

               
Cow position:
               
chr5:69461531-69461218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
120, 48
               

               
Conread position:
               
234-490
               

               
Cow position:
               
chr5:66366700-66366449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
236-548
               

               
Cow position:
               
chr5:71495011-71494701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
156, 28
               

               
Conread position:
               
238-548
               

               
Cow position:
               
chr5:37646353-37646662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
241-542
               

               
Cow position:
               
chr5:60183984-60183691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
139, 34
               

               
Conread position:
               
260-544
               

               
Cow position:
               
chr5:19524067-19523785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
260-548
               

               
Cow position:
               
chr5:56680424-56680131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 7
               

               
Conread position:
               
262-549
               

               
Cow position:
               
chr5:26990551-26990275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
265-493
               

               
Cow position:
               
chr5:45419975-45420195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
265-546
               

               
Cow position:
               
chr5:54767747-54768024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
111, 96
               

               
Conread position:
               
268-548
               

               
Cow position:
               
chr5:50533229-50533503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
268-548
               

               
Cow position:
               
chr5:63987286-63987567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
273-523
               

               
Cow position:
               
chr5:54086692-54086452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
128, 87
               

               
Conread position:
               
277-548
               

               
Cow position:
               
chr5:458638-458366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
238, 71
               

               
Conread position:
               
279-549
               

               
Cow position:
               
chr5:69731648-69731394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
280-525
               

               
Cow position:
               
chr5:59872933-59873184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
280-541
               

               
Cow position:
               
chr5:35126202-35125945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
280-546
               

               
Cow position:
               
chr5:45574767-45574501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
99, 171
               

               
Conread position:
               
280-548
               

               
Cow position:
               
chr5:16206008-16206271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
69, 111
               

               
Conread position:
               
280-548
               

               
Cow position:
               
chr5:56524321-56524059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
75, 84
               

               
Conread position:
               
281-548
               

               
Cow position:
               
chr5:34528692-34528445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 52
               

               
Conread position:
               
283-544
               

               
Cow position:
               
chr5:7698144-7697893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
283-547
               

               
Cow position:
               
chr5:72564908-72564645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
236, 155
               

               
Conread position:
               
283-548
               

               
Cow position:
               
chr5:75436745-75437009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
232, 6
               

               
Conread position:
               
284-522
               

               
Cow position:
               
chr5:47323605-47323375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
284-538
               

               
Cow position:
               
chr5:41294224-41293974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
284-545
               

               
Cow position:
               
chr5:15426681-15426416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
149, 105
               

               
Conread position:
               
284-546
               

               
Cow position:
               
chr5:21039841-21040090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
231, 10
               

               
Conread position:
               
284-546
               

               
Cow position:
               
chr5:37808520-37808790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
153, 188
               

               
Conread position:
               
284-546
               

               
Cow position:
               
chr5:38076340-38076597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
284-548
               

               
Cow position:
               
chr5:26476875-26477128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
145, 114
               

               
Conread position:
               
284-548
               

               
Cow position:
               
chr5:30949772-30950032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
284-549
               

               
Cow position:
               
chr5:36855349-36855087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 147
               

               
Conread position:
               
284-553
               

               
Cow position:
               
chr5:54375359-54375626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
251, 0
               

               
Conread position:
               
284-555
               

               
Cow position:
               
chr5:4031843-4032117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
284-555
               

               
Cow position:
               
chr5:54350218-54350491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
54, 59
               

               
Conread position:
               
285-535
               

               
Cow position:
               
chr5:55019433-55019189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
232, 8
               

               
Conread position:
               
285-548
               

               
Cow position:
               
chr5:14473261-14473533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
285-548
               

               
Cow position:
               
chr5:54060418-54060160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
233, 87
               

               
Conread position:
               
286-548
               

               
Cow position:
               
chr5:63426864-63427122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
90, 75
               

               
Conread position:
               
287-547
               

               
Cow position:
               
chr5:43992464-43992206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
231, 145
               

               
Conread position:
               
287-548
               

               
Cow position:
               
chr5:9089888-9090136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
287-548
               

               
Cow position:
               
chr5:45273362-45273617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
230, 22
               

               
Conread position:
               
287-557
               

               
Cow position:
               
chr5:23678563-23678829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
231, 36
               

               
Conread position:
               
288-545
               

               
Cow position:
               
chr5:13717432-13717684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
231, 21
               

               
Conread position:
               
290-547
               

               
Cow position:
               
chr5:41452535-41452779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
290-548
               

               
Cow position:
               
chr5:39875261-39875007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 78
               

               
Conread position:
               
290-549
               

               
Cow position:
               
chr5:23168689-23168942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 70
               

               
Conread position:
               
293-546
               

               
Cow position:
               
chr5:52000352-52000108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
293-548
               

               
Cow position:
               
chr5:62142810-62142554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
188, 138
               

               
Conread position:
               
294-548
               

               
Cow position:
               
chr5:6528818-6528566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
36, 155
               

               
Conread position:
               
294-549
               

               
Cow position:
               
chr5:58856235-58855986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
215, 69
               

               
Conread position:
               
294-555
               

               
Cow position:
               
chr5:59115513-59115258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
207, 19
               

               
Conread position:
               
297-538
               

               
Cow position:
               
chr5:64758637-64758878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 68
               

               
Conread position:
               
297-546
               

               
Cow position:
               
chr5:15598108-15598347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
297-547
               

               
Cow position:
               
chr5:57575904-57575654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
297-548
               

               
Cow position:
               
chr5:6045426-6045175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 64
               

               
Conread position:
               
297-548
               

               
Cow position:
               
chr5:28927464-28927705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
297-548
               

               
Cow position:
               
chr5:34301046-34300800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
48, 59
               

               
Conread position:
               
297-548
               

               
Cow position:
               
chr5:50821913-50821666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
300-548
               

               
Cow position:
               
chr5:48009732-48009965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
170, 79
               

               
Conread position:
               
301-549
               

               
Cow position:
               
chr5:65886884-65887128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
74, 59
               

               
Conread position:
               
304-548
               

               
Cow position:
               
chr5:46509742-46509982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
308-556
               

               
Cow position:
               
chr5:52644961-52645203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
309-539
               

               
Cow position:
               
chr5:56636013-56635793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 52
               

               
Conread position:
               
309-548
               

               
Cow position:
               
chr5:32696705-32696936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
309-549
               

               
Cow position:
               
chr5:65588817-65588586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
310-512
               

               
Cow position:
               
chr5:31640542-31640340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
149, 132
               

               
Conread position:
               
314-502
               

               
Cow position:
               
chr5:67212474-67212286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
124, 130
               

               
Conread position:
               
314-548
               

               
Cow position:
               
chr5:65883659-65883892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
62, 58
               

               
Conread position:
               
319-529
               

               
Cow position:
               
chr5:8162710-8162920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
57, 53
               

               
Conread position:
               
332-544
               

               
Cow position:
               
chr5:69520986-69520781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
332-548
               

               
Cow position:
               
chr5:14629715-14629929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
100, 116
               

               
Conread position:
               
332-548
               

               
Cow position:
               
chr5:63865890-63865679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
332-549
               

               
Cow position:
               
chr5:67540106-67540320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 28
               

               
Conread position:
               
335-548
               

               
Cow position:
               
chr5:36255165-36255376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
120, 95
               

               
Conread position:
               
374-544
               

               
Cow position:
               
chr5:29212997-29212832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
374-548
               

               
Cow position:
               
chr5:29979929-29980099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
375-547
               

               
Cow position:
               
chr5:7140056-7140226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
136, 11
               

               
Conread position:
               
375-548
               

               
Cow position:
               
chr5:18899028-18898863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
375-548
               

               
Cow position:
               
chr5:27015730-27015568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
379-548
               

               
Cow position:
               
chr5:21964335-21964169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
379-548
               

               
Cow position:
               
chr5:58144553-58144720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
136, 53
               

               
Conread position:
               
379-555
               

               
Cow position:
               
chr5:34115699-34115527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
380-548
               

               
Cow position:
               
chr5:24485387-24485552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
387-548
               

               
Cow position:
               
chr5:8994525-8994682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
388-546
               

               
Cow position:
               
chr5:40039729-40039884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
388-547
               

               
Cow position:
               
chr5:2500140-2500303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
388-547
               

               
Cow position:
               
chr5:54404850-54405008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
138, 44
               

               
Conread position:
               
388-548
               

               
Cow position:
               
chr5:16179484-16179641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 24
               

               
Conread position:
               
388-548
               

               
Cow position:
               
chr5:71579215-71579058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
131, 41
               

               
Conread position:
               
388-556
               

               
Cow position:
               
chr5:51800933-51801097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
131, 43
               

               
Conread position:
               
392-529
               

               
Cow position:
               
chr5:29860386-29860250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
392-547
               

               
Cow position:
               
chr5:62826717-62826869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
395-548
               

               
Cow position:
               
chr5:32956062-32956212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
400-543
               

               
Cow position:
               
chr5:29895226-29895087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
402-547
               

               
Cow position:
               
chr5:56433834-56433689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
403-545
               

               
Cow position:
               
chr5:34192930-34192786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
116, 93
               

               
Conread position:
               
403-548
               

               
Cow position:
               
chr5:9859687-9859829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
403-548
               

               
Cow position:
               
chr5:16509124-16508979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 44
               

               
Conread position:
               
403-548
               

               
Cow position:
               
chr5:41486713-41486857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
403-548
               

               
Cow position:
               
chr5:56820236-56820378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
403-549
               

               
Cow position:
               
chr5:17644630-17644773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
419-548
               

               
Cow position:
               
chr5:18090737-18090607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
419-571
               

               
Cow position:
               
chr5:40356856-40357008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
100, 8
               

               
Conread position:
               
421-542
               

               
Cow position:
               
chr5:42748168-42748046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
422-548
               

               
Cow position:
               
chr5:51490749-51490875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
428-548
               

               
Cow position:
               
chr5:7921396-7921516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
428-548
               

               
Cow position:
               
chr5:16185091-16184971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
429-548
               

               
Cow position:
               
chr5:32963629-32963745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
430-548
               

               
Cow position:
               
chr5:19294485-19294602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
6, 97
               

               
Conread position:
               
435-548
               

               
Cow position:
               
chr5:65932932-65933046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 7
               

               
Conread position:
               
435-549
               

               
Cow position:
               
chr5:45037017-45036904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
443-546
               

               
Cow position:
               
chr5:60520151-60520048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.