• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
rtra25_l14r1.y1
        

               
Conread position:
               
208-489
               

               
Cow position:
               
chr5:32976100-32975804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 19
               

               
Conread position:
               
222-499
               

               
Cow position:
               
chr5:40122289-40122568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
237-502
               

               
Cow position:
               
chr5:34914735-34915014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
17, 248
               

               
Conread position:
               
247-503
               

               
Cow position:
               
chr5:24995924-24996184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
257-447
               

               
Cow position:
               
chr5:18706242-18706054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
263-463
               

               
Cow position:
               
chr5:47959981-47960189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
266-483
               

               
Cow position:
               
chr5:743004-742780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
266-499
               

               
Cow position:
               
chr5:15364147-15363924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
266-499
               

               
Cow position:
               
chr5:39815226-39815459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
123, 8
               

               
Conread position:
               
269-466
               

               
Cow position:
               
chr5:67340159-67339952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
269-483
               

               
Cow position:
               
chr5:4280715-4280498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
271-457
               

               
Cow position:
               
chr5:12557013-12557209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
271-503
               

               
Cow position:
               
chr5:41009738-41009965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
273-468
               

               
Cow position:
               
chr5:46540788-46540989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
277-463
               

               
Cow position:
               
chr5:35208533-35208333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
277-463
               

               
Cow position:
               
chr5:43604406-43604211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
278-503
               

               
Cow position:
               
chr5:45186848-45187079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 167
               

               
Conread position:
               
278-503
               

               
Cow position:
               
chr5:57074071-57074293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
280-484
               

               
Cow position:
               
chr5:18579155-18578945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
281-458
               

               
Cow position:
               
chr5:17537416-17537596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 109
               

               
Conread position:
               
281-476
               

               
Cow position:
               
chr5:46512503-46512709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 185
               

               
Conread position:
               
282-458
               

               
Cow position:
               
chr5:56624249-56624440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
282-485
               

               
Cow position:
               
chr5:65679720-65679923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 71
               

               
Conread position:
               
282-494
               

               
Cow position:
               
chr5:45854761-45854538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 7
               

               
Conread position:
               
283-485
               

               
Cow position:
               
chr5:37941546-37941758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
66, 141
               

               
Conread position:
               
283-499
               

               
Cow position:
               
chr5:3772100-3771880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
283-503
               

               
Cow position:
               
chr5:36038745-36038963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
284-489
               

               
Cow position:
               
chr5:57447402-57447622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
284-498
               

               
Cow position:
               
chr5:61049595-61049375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 193
               

               
Conread position:
               
284-503
               

               
Cow position:
               
chr5:20127169-20126941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
284-503
               

               
Cow position:
               
chr5:57062272-57062491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
65, 30
               

               
Conread position:
               
285-453
               

               
Cow position:
               
chr5:3626920-3627095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 145
               

               
Conread position:
               
285-455
               

               
Cow position:
               
chr5:28660489-28660310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
285-458
               

               
Cow position:
               
chr5:57231887-57231711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 33
               

               
Conread position:
               
285-461
               

               
Cow position:
               
chr5:55949419-55949605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 21
               

               
Conread position:
               
285-466
               

               
Cow position:
               
chr5:47335274-47335097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
285-468
               

               
Cow position:
               
chr5:54751070-54750874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
285-503
               

               
Cow position:
               
chr5:11562469-11562685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
286-463
               

               
Cow position:
               
chr5:31648676-31648491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
286-468
               

               
Cow position:
               
chr5:55232563-55232747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
286-503
               

               
Cow position:
               
chr5:39036042-39035818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 150
               

               
Conread position:
               
288-503
               

               
Cow position:
               
chr5:60514773-60514990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
289-463
               

               
Cow position:
               
chr5:24108801-24108988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 8
               

               
Conread position:
               
289-499
               

               
Cow position:
               
chr5:12902174-12901949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
289-501
               

               
Cow position:
               
chr5:35826845-35826642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
289-503
               

               
Cow position:
               
chr5:50824839-50824630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
290-461
               

               
Cow position:
               
chr5:58487627-58487449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
290-490
               

               
Cow position:
               
chr5:56463296-56463104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
290-503
               

               
Cow position:
               
chr5:54127538-54127328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
290-503
               

               
Cow position:
               
chr5:56014977-56014769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
27, 107
               

               
Conread position:
               
291-455
               

               
Cow position:
               
chr5:56564005-56563834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 113
               

               
Conread position:
               
291-466
               

               
Cow position:
               
chr5:72895937-72895755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
291-484
               

               
Cow position:
               
chr5:63300329-63300130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
291-503
               

               
Cow position:
               
chr5:16893529-16893733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
292-468
               

               
Cow position:
               
chr5:8136712-8136538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
292-500
               

               
Cow position:
               
chr5:41984591-41984392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
293-463
               

               
Cow position:
               
chr5:65140553-65140371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
293-468
               

               
Cow position:
               
chr5:16025235-16025401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
293-468
               

               
Cow position:
               
chr5:58519163-58519349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
293-502
               

               
Cow position:
               
chr5:57686500-57686698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
110, 5
               

               
Conread position:
               
293-503
               

               
Cow position:
               
chr5:69338063-69337858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
294-449
               

               
Cow position:
               
chr5:74050073-74049910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
294-490
               

               
Cow position:
               
chr5:60207954-60207759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
296-468
               

               
Cow position:
               
chr5:25462330-25462155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
296-503
               

               
Cow position:
               
chr5:51289354-51289553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
297-466
               

               
Cow position:
               
chr5:35763491-35763331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
297-473
               

               
Cow position:
               
chr5:22957651-22957472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
297-499
               

               
Cow position:
               
chr5:22102797-22102600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
99, 21
               

               
Conread position:
               
297-501
               

               
Cow position:
               
chr5:2240741-2240952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
18, 183
               

               
Conread position:
               
298-449
               

               
Cow position:
               
chr5:14000884-14000731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
93, 21
               

               
Conread position:
               
298-457
               

               
Cow position:
               
chr5:41628431-41628587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 60
               

               
Conread position:
               
298-462
               

               
Cow position:
               
chr5:19626820-19626651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
298-463
               

               
Cow position:
               
chr5:59511235-59511400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 63
               

               
Conread position:
               
298-468
               

               
Cow position:
               
chr5:62011930-62011750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
298-478
               

               
Cow position:
               
chr5:55783716-55783905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
298-481
               

               
Cow position:
               
chr5:29010493-29010309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
97, 56
               

               
Conread position:
               
298-485
               

               
Cow position:
               
chr5:6520253-6520063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 126
               

               
Conread position:
               
298-485
               

               
Cow position:
               
chr5:21003542-21003363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 16
               

               
Conread position:
               
298-492
               

               
Cow position:
               
chr5:26167664-26167461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
298-499
               

               
Cow position:
               
chr5:52001374-52001581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 176
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr5:3817441-3817649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr5:26548896-26549102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
25, 178
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr5:30233150-30232946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
97, 7
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr5:44796490-44796695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 73
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr5:50101133-50101338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr5:69461587-69461371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
33, 160
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr5:73253650-73253449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
299-434
               

               
Cow position:
               
chr5:44836782-44836643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
299-463
               

               
Cow position:
               
chr5:55177126-55176959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
26, 163
               

               
Conread position:
               
299-463
               

               
Cow position:
               
chr5:58401806-58401641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
299-468
               

               
Cow position:
               
chr5:37672425-37672267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 83
               

               
Conread position:
               
299-468
               

               
Cow position:
               
chr5:52853216-52853038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
299-497
               

               
Cow position:
               
chr5:38833361-38833165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
6, 77
               

               
Conread position:
               
299-502
               

               
Cow position:
               
chr5:11667937-11668146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 178
               

               
Conread position:
               
299-503
               

               
Cow position:
               
chr5:35190351-35190148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
50, 175
               

               
Conread position:
               
299-503
               

               
Cow position:
               
chr5:49821679-49821466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 185
               

               
Conread position:
               
299-503
               

               
Cow position:
               
chr5:62172642-62172450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
299-503
               

               
Cow position:
               
chr5:64026764-64026981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
39, 189
               

               
Conread position:
               
300-452
               

               
Cow position:
               
chr5:54150077-54149929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
42, 5
               

               
Conread position:
               
300-463
               

               
Cow position:
               
chr5:33273941-33273765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
300-463
               

               
Cow position:
               
chr5:54341011-54340838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
300-463
               

               
Cow position:
               
chr5:64843719-64843899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
300-466
               

               
Cow position:
               
chr5:21721231-21721401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr5:6245421-6245596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
300-498
               

               
Cow position:
               
chr5:44446629-44446822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
300-503
               

               
Cow position:
               
chr5:12322567-12322766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
43, 170
               

               
Conread position:
               
300-503
               

               
Cow position:
               
chr5:30276931-30276728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
21, 17
               

               
Conread position:
               
301-463
               

               
Cow position:
               
chr5:12504548-12504718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 83
               

               
Conread position:
               
301-485
               

               
Cow position:
               
chr5:36823114-36822932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
302-503
               

               
Cow position:
               
chr5:26467868-26467664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
302-503
               

               
Cow position:
               
chr5:57934879-57935070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
303-452
               

               
Cow position:
               
chr5:31964787-31964647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
303-463
               

               
Cow position:
               
chr5:62996196-62996029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chr5:1247505-1247296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
303-503
               

               
Cow position:
               
chr5:41165321-41165126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chr5:54875452-54875655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 171
               

               
Conread position:
               
304-503
               

               
Cow position:
               
chr5:26147828-26147629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
305-429
               

               
Cow position:
               
chr5:74690014-74690148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
305-446
               

               
Cow position:
               
chr5:40102508-40102651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
305-460
               

               
Cow position:
               
chr5:45225582-45225741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
305-462
               

               
Cow position:
               
chr5:59958408-59958247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
305-463
               

               
Cow position:
               
chr5:15471157-15471001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
305-463
               

               
Cow position:
               
chr5:47316737-47316902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
305-468
               

               
Cow position:
               
chr5:18289360-18289189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
305-468
               

               
Cow position:
               
chr5:49207091-49207260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
305-468
               

               
Cow position:
               
chr5:60016398-60016232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
305-468
               

               
Cow position:
               
chr5:61580519-61580348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
305-468
               

               
Cow position:
               
chr5:66287180-66287012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 26
               

               
Conread position:
               
305-476
               

               
Cow position:
               
chr5:52849321-52849144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
305-499
               

               
Cow position:
               
chr5:43858179-43858377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 171
               

               
Conread position:
               
305-501
               

               
Cow position:
               
chr5:6438789-6438981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
305-501
               

               
Cow position:
               
chr5:22667309-22667111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
44, 170
               

               
Conread position:
               
305-502
               

               
Cow position:
               
chr5:29599315-29599508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
305-503
               

               
Cow position:
               
chr5:991712-991502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
305-503
               

               
Cow position:
               
chr5:12562520-12562722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 123
               

               
Conread position:
               
305-503
               

               
Cow position:
               
chr5:16185617-16185416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
305-503
               

               
Cow position:
               
chr5:17105083-17104891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
305-503
               

               
Cow position:
               
chr5:21829103-21828906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
88, 146
               

               
Conread position:
               
305-503
               

               
Cow position:
               
chr5:33560501-33560696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
305-503
               

               
Cow position:
               
chr5:34562248-34562054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
305-503
               

               
Cow position:
               
chr5:45472514-45472320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
305-503
               

               
Cow position:
               
chr5:57767748-57767947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
18, 171
               

               
Conread position:
               
306-452
               

               
Cow position:
               
chr5:70951656-70951806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
306-462
               

               
Cow position:
               
chr5:40241972-40241818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 90
               

               
Conread position:
               
306-468
               

               
Cow position:
               
chr5:5030675-5030510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
306-468
               

               
Cow position:
               
chr5:12434773-12434610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
306-482
               

               
Cow position:
               
chr5:19968120-19968306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
306-486
               

               
Cow position:
               
chr5:25598062-25597883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
97, 11
               

               
Conread position:
               
306-498
               

               
Cow position:
               
chr5:56028308-56028498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
306-501
               

               
Cow position:
               
chr5:15991406-15991599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
18, 115
               

               
Conread position:
               
306-502
               

               
Cow position:
               
chr5:22242536-22242728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 66
               

               
Conread position:
               
306-502
               

               
Cow position:
               
chr5:47602048-47601851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
10, 67
               

               
Conread position:
               
306-503
               

               
Cow position:
               
chr5:12654671-12654873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
43, 133
               

               
Conread position:
               
306-503
               

               
Cow position:
               
chr5:49474316-49474507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
307-463
               

               
Cow position:
               
chr5:12478736-12478886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
307-463
               

               
Cow position:
               
chr5:57101289-57101451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 114
               

               
Conread position:
               
307-467
               

               
Cow position:
               
chr5:52211456-52211619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
307-468
               

               
Cow position:
               
chr5:37253660-37253496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
307-485
               

               
Cow position:
               
chr5:30845342-30845158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
307-494
               

               
Cow position:
               
chr5:25366337-25366143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 116
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr5:50942932-50943117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
308-425
               

               
Cow position:
               
chr5:8149075-8149196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
308-463
               

               
Cow position:
               
chr5:73167778-73167939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
308-468
               

               
Cow position:
               
chr5:52192202-52192362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
94, 41
               

               
Conread position:
               
308-468
               

               
Cow position:
               
chr5:55756177-55756351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
308-468
               

               
Cow position:
               
chr5:55942142-55942312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
308-489
               

               
Cow position:
               
chr5:35246868-35247065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
308-490
               

               
Cow position:
               
chr5:55943482-55943668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
41, 169
               

               
Conread position:
               
308-501
               

               
Cow position:
               
chr5:70591777-70591594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
308-502
               

               
Cow position:
               
chr5:28302521-28302704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
308-503
               

               
Cow position:
               
chr5:8736039-8736241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
11, 167
               

               
Conread position:
               
308-503
               

               
Cow position:
               
chr5:14314752-14314566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
41, 81
               

               
Conread position:
               
308-503
               

               
Cow position:
               
chr5:51053411-51053617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
309-468
               

               
Cow position:
               
chr5:35685168-35685002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
309-468
               

               
Cow position:
               
chr5:44028073-44028240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
309-492
               

               
Cow position:
               
chr5:75478683-75478871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
33, 170
               

               
Conread position:
               
311-426
               

               
Cow position:
               
chr5:63940221-63940339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 65
               

               
Conread position:
               
311-452
               

               
Cow position:
               
chr5:48104493-48104344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
311-455
               

               
Cow position:
               
chr5:14419785-14419930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
311-468
               

               
Cow position:
               
chr5:60100696-60100537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
5, 115
               

               
Conread position:
               
311-468
               

               
Cow position:
               
chr5:60154001-60153842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
5, 86
               

               
Conread position:
               
311-468
               

               
Cow position:
               
chr5:74643451-74643611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
311-502
               

               
Cow position:
               
chr5:37842046-37842240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
35, 167
               

               
Conread position:
               
311-503
               

               
Cow position:
               
chr5:7044473-7044667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 157
               

               
Conread position:
               
311-503
               

               
Cow position:
               
chr5:16668919-16668735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
92, 7
               

               
Conread position:
               
311-503
               

               
Cow position:
               
chr5:34288021-34288212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
38, 167
               

               
Conread position:
               
311-503
               

               
Cow position:
               
chr5:35394208-35394395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 7
               

               
Conread position:
               
311-503
               

               
Cow position:
               
chr5:45845457-45845653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
311-503
               

               
Cow position:
               
chr5:64175897-64176088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 158
               

               
Conread position:
               
312-503
               

               
Cow position:
               
chr5:51298484-51298674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
313-502
               

               
Cow position:
               
chr5:51246906-51247092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
313-503
               

               
Cow position:
               
chr5:14920696-14920892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
313-503
               

               
Cow position:
               
chr5:20288027-20288225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 170
               

               
Conread position:
               
314-458
               

               
Cow position:
               
chr5:34639354-34639199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
314-462
               

               
Cow position:
               
chr5:64061243-64061092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
314-463
               

               
Cow position:
               
chr5:31234934-31234784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 84
               

               
Conread position:
               
314-463
               

               
Cow position:
               
chr5:46479017-46479170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
314-468
               

               
Cow position:
               
chr5:30562158-30561999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
314-468
               

               
Cow position:
               
chr5:34918573-34918413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
314-476
               

               
Cow position:
               
chr5:29895401-29895230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
314-485
               

               
Cow position:
               
chr5:19752531-19752352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr5:6876735-6876926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 149
               

               
Conread position:
               
314-502
               

               
Cow position:
               
chr5:65941020-65941211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
35, 164
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr5:9893895-9894085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
34, 150
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr5:21617685-21617496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
35, 161
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr5:22795436-22795255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
37, 66
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr5:42050774-42050590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
80, 96
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr5:56071088-56070897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 158
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr5:57101567-57101741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
129, 35
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr5:59626742-59626933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
35, 119
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr5:75227983-75228161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
316-503
               

               
Cow position:
               
chr5:1693864-1694050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 158
               

               
Conread position:
               
319-458
               

               
Cow position:
               
chr5:63627315-63627458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
319-461
               

               
Cow position:
               
chr5:36143203-36143058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
319-468
               

               
Cow position:
               
chr5:34625173-34625027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
319-468
               

               
Cow position:
               
chr5:34787797-34787641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
319-468
               

               
Cow position:
               
chr5:64140763-64140605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
319-477
               

               
Cow position:
               
chr5:57497201-57497366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
319-478
               

               
Cow position:
               
chr5:56548791-56548628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
319-485
               

               
Cow position:
               
chr5:21520225-21520389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
319-485
               

               
Cow position:
               
chr5:69765809-69765982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 158
               

               
Conread position:
               
319-488
               

               
Cow position:
               
chr5:70572583-70572424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
319-498
               

               
Cow position:
               
chr5:56327501-56327678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
84, 145
               

               
Conread position:
               
319-499
               

               
Cow position:
               
chr5:3582780-3582602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 150
               

               
Conread position:
               
319-499
               

               
Cow position:
               
chr5:5016648-5016459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
319-499
               

               
Cow position:
               
chr5:56524387-56524216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
319-502
               

               
Cow position:
               
chr5:60948357-60948172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 154
               

               
Conread position:
               
319-503
               

               
Cow position:
               
chr5:6086116-6086305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
27, 155
               

               
Conread position:
               
319-503
               

               
Cow position:
               
chr5:25035029-25035217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 164
               

               
Conread position:
               
319-503
               

               
Cow position:
               
chr5:30303106-30302932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
319-503
               

               
Cow position:
               
chr5:30628928-30629121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 110
               

               
Conread position:
               
319-503
               

               
Cow position:
               
chr5:43403134-43402943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 163
               

               
Conread position:
               
319-503
               

               
Cow position:
               
chr5:69099944-69099758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
30, 130
               

               
Conread position:
               
319-503
               

               
Cow position:
               
chr5:70271092-70270905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 155
               

               
Conread position:
               
320-498
               

               
Cow position:
               
chr5:44847803-44847978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
29, 148
               

               
Conread position:
               
320-502
               

               
Cow position:
               
chr5:30253964-30253780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 158
               

               
Conread position:
               
320-503
               

               
Cow position:
               
chr5:40109708-40109531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
320-503
               

               
Cow position:
               
chr5:53835945-53835755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 142
               

               
Conread position:
               
322-452
               

               
Cow position:
               
chr5:22898097-22898226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
322-458
               

               
Cow position:
               
chr5:20667558-20667696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
322-467
               

               
Cow position:
               
chr5:4824375-4824216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
322-468
               

               
Cow position:
               
chr5:60523949-60523799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
322-486
               

               
Cow position:
               
chr5:71387421-71387256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
322-503
               

               
Cow position:
               
chr5:4267882-4267708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
322-503
               

               
Cow position:
               
chr5:69383473-69383293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
323-468
               

               
Cow position:
               
chr5:74065299-74065450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
323-476
               

               
Cow position:
               
chr5:9559634-9559480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 71
               

               
Conread position:
               
323-483
               

               
Cow position:
               
chr5:72045456-72045624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
20, 159
               

               
Conread position:
               
323-488
               

               
Cow position:
               
chr5:40531311-40531492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
323-489
               

               
Cow position:
               
chr5:5017592-5017421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 87
               

               
Conread position:
               
323-497
               

               
Cow position:
               
chr5:44734506-44734683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
26, 154
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:16179303-16179473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
326-484
               

               
Cow position:
               
chr5:26790113-26790273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
326-499
               

               
Cow position:
               
chr5:66366726-66366552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 144
               

               
Conread position:
               
328-503
               

               
Cow position:
               
chr5:51233808-51233981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 145
               

               
Conread position:
               
329-468
               

               
Cow position:
               
chr5:4981660-4981517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
329-468
               

               
Cow position:
               
chr5:12673265-12673411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
329-503
               

               
Cow position:
               
chr5:17554820-17554994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 105
               

               
Conread position:
               
330-468
               

               
Cow position:
               
chr5:45397779-45397637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 123
               

               
Conread position:
               
332-468
               

               
Cow position:
               
chr5:56334312-56334444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
332-503
               

               
Cow position:
               
chr5:38169104-38168932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 144
               

               
Conread position:
               
334-503
               

               
Cow position:
               
chr5:15721878-15722036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
334-503
               

               
Cow position:
               
chr5:72006287-72006452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
338-458
               

               
Cow position:
               
chr5:71724492-71724375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
113, 47
               

               
Conread position:
               
341-468
               

               
Cow position:
               
chr5:46704100-46704232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
342-476
               

               
Cow position:
               
chr5:17604937-17605075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
345-503
               

               
Cow position:
               
chr5:38040372-38040526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 126
               

               
Conread position:
               
345-503
               

               
Cow position:
               
chr5:55795774-55795929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
54, 127
               

               
Conread position:
               
349-468
               

               
Cow position:
               
chr5:65050026-65050144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
5, 50
               

               
Conread position:
               
351-493
               

               
Cow position:
               
chr5:17602015-17602165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
360-498
               

               
Cow position:
               
chr5:29979783-29979915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
382-501
               

               
Cow position:
               
chr5:9233833-9233949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 90
               
Show alignments to all cow chromosomes.