Cow genome map
| Conread name: | rtra32_o15.y1 |
| Conread position: | 1-175 |
| Cow position: | chr10:10582187-10582361 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 83 |
| Conread position: | 1-224 |
| Cow position: | chr10:44294534-44294315 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 32, 74 |
| Conread position: | 1-240 |
| Cow position: | chr10:32578665-32578904 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 38, 149 |
| Conread position: | 1-255 |
| Cow position: | chr10:17432873-17432626 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 1-273 |
| Cow position: | chr10:21900397-21900133 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 81 |
| Conread position: | 1-281 |
| Cow position: | chr10:25564881-25564605 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 1-320 |
| Cow position: | chr10:11821144-11821467 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 32, 107 |
| Conread position: | 1-354 |
| Cow position: | chr10:31524479-31524822 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 1-420 |
| Cow position: | chr10:19495909-19495484 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 131 |
| Conread position: | 1-422 |
| Cow position: | chr10:8326913-8326508 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 6 |
| Conread position: | 1-422 |
| Cow position: | chr10:26596994-26597413 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 152 |
| Conread position: | 1-422 |
| Cow position: | chr10:57989610-57989192 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 1-423 |
| Cow position: | chr10:280246-279809 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 1-423 |
| Cow position: | chr10:2120629-2120212 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 1-423 |
| Cow position: | chr10:8290361-8290777 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 149 |
| Conread position: | 1-423 |
| Cow position: | chr10:14804213-14804633 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 1-423 |
| Cow position: | chr10:19511989-19512409 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 1-423 |
| Cow position: | chr10:19715184-19714766 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 1-423 |
| Cow position: | chr10:21400294-21399872 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr10:21487299-21487720 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr10:28641916-28642332 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr10:30685130-30684714 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 152 |
| Conread position: | 1-423 |
| Cow position: | chr10:38344977-38344561 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr10:38538120-38537698 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr10:38545517-38545117 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-423 |
| Cow position: | chr10:39040918-39040506 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 1-423 |
| Cow position: | chr10:39180160-39180588 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 1-423 |
| Cow position: | chr10:41157824-41158240 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr10:41877295-41877716 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 151 |
| Conread position: | 1-423 |
| Cow position: | chr10:55093642-55094065 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 151 |
| Conread position: | 1-423 |
| Cow position: | chr10:62408467-62408045 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-424 |
| Cow position: | chr10:22101621-22102038 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 1-425 |
| Cow position: | chr10:7281711-7281287 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-425 |
| Cow position: | chr10:16925914-16926335 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 2-423 |
| Cow position: | chr10:29846267-29845849 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 151 |
| Conread position: | 5-423 |
| Cow position: | chr10:21883186-21883590 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 211, 28 |
| Conread position: | 8-287 |
| Cow position: | chr10:41388722-41388443 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 146 |
| Conread position: | 10-212 |
| Cow position: | chr10:32064981-32065185 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 10-423 |
| Cow position: | chr10:5849236-5848828 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 137 |
| Conread position: | 12-274 |
| Cow position: | chr10:37770760-37771022 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 139 |
| Conread position: | 13-223 |
| Cow position: | chr10:39816097-39815887 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 13-313 |
| Cow position: | chr10:51952233-51951937 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-423 |
| Cow position: | chr10:4191849-4191449 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-423 |
| Cow position: | chr10:11698632-11699042 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 13-423 |
| Cow position: | chr10:41567491-41567898 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-423 |
| Cow position: | chr10:47907319-47907729 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 13-423 |
| Cow position: | chr10:56065062-56065472 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 28-223 |
| Cow position: | chr10:60193086-60193276 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 28-333 |
| Cow position: | chr10:39779649-39779940 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 28-343 |
| Cow position: | chr10:1377656-1377961 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 28-384 |
| Cow position: | chr10:14929297-14929641 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 104, 74 |
| Conread position: | 28-422 |
| Cow position: | chr10:32557769-32558147 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 313, 118 |
| Conread position: | 28-423 |
| Cow position: | chr10:14335432-14335050 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 54-423 |
| Cow position: | chr10:57482610-57482255 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 22, 96 |
| Conread position: | 106-423 |
| Cow position: | chr10:11685158-11684847 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 111-297 |
| Cow position: | chr10:5679-5860 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 152-422 |
| Cow position: | chr10:21480454-21480722 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 119, 46 |
| Conread position: | 196-423 |
| Cow position: | chr10:29632194-29631968 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 249-423 |
| Cow position: | chr10:39815914-39815740 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-423 |
| Cow position: | chr10:19840350-19840480 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.