Cow genome map
| Conread name: | rtra32_o15.y1 |
| Conread position: | 1-223 |
| Cow position: | chr11:20510146-20510366 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 1-227 |
| Cow position: | chr11:59369838-59370067 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 136 |
| Conread position: | 1-238 |
| Cow position: | chr11:30187880-30188120 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-285 |
| Cow position: | chr11:4270839-4270556 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-287 |
| Cow position: | chr11:8245330-8245616 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-358 |
| Cow position: | chr11:23877325-23877683 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 150 |
| Conread position: | 1-411 |
| Cow position: | chr11:19064234-19063825 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 1-414 |
| Cow position: | chr11:76374182-76373788 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-421 |
| Cow position: | chr11:58134409-58134828 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 149 |
| Conread position: | 1-422 |
| Cow position: | chr11:53432044-53431623 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr11:4027541-4027124 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 1-423 |
| Cow position: | chr11:9157132-9156719 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 61 |
| Conread position: | 1-423 |
| Cow position: | chr11:9734648-9734236 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 151 |
| Conread position: | 1-423 |
| Cow position: | chr11:10090698-10091117 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr11:10847464-10847887 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr11:11988129-11988548 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr11:12093581-12094003 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 102 |
| Conread position: | 1-423 |
| Cow position: | chr11:12358402-12357980 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr11:15898925-15898509 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 282 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 32, 151 |
| Conread position: | 1-423 |
| Cow position: | chr11:15983639-15984062 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr11:17107671-17107250 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 149 |
| Conread position: | 1-423 |
| Cow position: | chr11:19102464-19102059 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr11:24393341-24393756 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 151 |
| Conread position: | 1-423 |
| Cow position: | chr11:26124909-26124490 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 153 |
| Conread position: | 1-423 |
| Cow position: | chr11:28054577-28054172 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-423 |
| Cow position: | chr11:28229742-28229319 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr11:38835409-38834998 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr11:41170671-41170259 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr11:43514614-43514196 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr11:44157231-44156811 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr11:67450513-67450929 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr11:84389649-84390073 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-424 |
| Cow position: | chr11:44251820-44252237 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 1-425 |
| Cow position: | chr11:85393789-85393366 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 106 |
| Conread position: | 3-277 |
| Cow position: | chr11:11677375-11677641 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 4-423 |
| Cow position: | chr11:62229214-62229624 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 5-423 |
| Cow position: | chr11:29668587-29668172 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 6-423 |
| Cow position: | chr11:28702029-28702445 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 27, 152 |
| Conread position: | 7-294 |
| Cow position: | chr11:52766637-52766914 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 155, 47 |
| Conread position: | 9-423 |
| Cow position: | chr11:31874742-31874342 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 115 |
| Conread position: | 10-423 |
| Cow position: | chr11:33194525-33194122 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 108 |
| Conread position: | 10-423 |
| Cow position: | chr11:45111651-45112053 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 137 |
| Conread position: | 13-271 |
| Cow position: | chr11:4041061-4040808 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 13-359 |
| Cow position: | chr11:5343190-5342844 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 13-423 |
| Cow position: | chr11:1496052-1495652 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 13-423 |
| Cow position: | chr11:3493038-3493431 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-423 |
| Cow position: | chr11:20734215-20733805 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-423 |
| Cow position: | chr11:28108177-28108573 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 13-423 |
| Cow position: | chr11:31926205-31926609 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 13-423 |
| Cow position: | chr11:36744153-36743744 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 137 |
| Conread position: | 13-423 |
| Cow position: | chr11:57628019-57627601 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 13-423 |
| Cow position: | chr11:61401024-61400623 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 13-423 |
| Cow position: | chr11:64046025-64046435 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 13-423 |
| Cow position: | chr11:64082056-64081646 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 13-423 |
| Cow position: | chr11:67846544-67846132 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-423 |
| Cow position: | chr11:73477335-73477745 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 14-414 |
| Cow position: | chr11:9606544-9606152 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 20-420 |
| Cow position: | chr11:42432191-42432580 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 66 |
| Conread position: | 20-423 |
| Cow position: | chr11:52419429-52419827 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 131 |
| Conread position: | 28-137 |
| Cow position: | chr11:8283526-8283635 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-249 |
| Cow position: | chr11:47760643-47760427 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 28-414 |
| Cow position: | chr11:21443368-21443724 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 112, 63 |
| Conread position: | 28-422 |
| Cow position: | chr11:40775947-40775565 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 95 |
| Conread position: | 28-423 |
| Cow position: | chr11:63655290-63654900 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 42-423 |
| Cow position: | chr11:71329656-71330029 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 44-339 |
| Cow position: | chr11:22934861-22935149 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 82 |
| Conread position: | 59-423 |
| Cow position: | chr11:39802943-39803297 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 63-423 |
| Cow position: | chr11:53287083-53286728 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 82-421 |
| Cow position: | chr11:44492170-44491840 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 106-270 |
| Cow position: | chr11:4057142-4057301 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 130-423 |
| Cow position: | chr11:17546316-17546604 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 208-422 |
| Cow position: | chr11:20510620-20510832 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 60, 108 |
| Conread position: | 234-423 |
| Cow position: | chr11:19063825-19063636 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-420 |
| Cow position: | chr11:24336939-24336756 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-423 |
| Cow position: | chr11:71982260-71982087 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 282-423 |
| Cow position: | chr11:4270091-4269950 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.