Cow genome map
| Conread name: | rtra32_o15.y1 |
| Conread position: | 1-257 |
| Cow position: | chr13:46731631-46731389 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 1-275 |
| Cow position: | chr13:11064080-11063813 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 1-324 |
| Cow position: | chr13:3058029-3057706 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 139 |
| Conread position: | 1-343 |
| Cow position: | chr13:4941176-4941511 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-351 |
| Cow position: | chr13:33336331-33335993 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 90 |
| Conread position: | 1-378 |
| Cow position: | chr13:9044588-9044965 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-384 |
| Cow position: | chr13:13324830-13325204 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-402 |
| Cow position: | chr13:34868830-34869228 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 150 |
| Conread position: | 1-412 |
| Cow position: | chr13:34042281-34041875 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-422 |
| Cow position: | chr13:50109542-50109955 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 1-423 |
| Cow position: | chr13:1593069-1592647 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr13:4483881-4484302 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 152 |
| Conread position: | 1-423 |
| Cow position: | chr13:6668032-6667613 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr13:23003221-23002800 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr13:30238333-30238747 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 148 |
| Conread position: | 1-423 |
| Cow position: | chr13:30303364-30303788 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 1-423 |
| Cow position: | chr13:31556628-31556222 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 1-423 |
| Cow position: | chr13:31734004-31733582 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 1-423 |
| Cow position: | chr13:32737737-32737319 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 74 |
| Conread position: | 1-423 |
| Cow position: | chr13:34325476-34325055 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 152 |
| Conread position: | 1-423 |
| Cow position: | chr13:34937578-34937986 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 151 |
| Conread position: | 1-423 |
| Cow position: | chr13:43982994-43982579 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 1-423 |
| Cow position: | chr13:47229920-47229498 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr13:49973766-49974181 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 149 |
| Conread position: | 1-424 |
| Cow position: | chr13:2388737-2388309 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 2-423 |
| Cow position: | chr13:15924295-15923875 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 149 |
| Conread position: | 3-369 |
| Cow position: | chr13:15451020-15450660 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 3-423 |
| Cow position: | chr13:35757331-35757751 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 147 |
| Conread position: | 4-423 |
| Cow position: | chr13:15520407-15520002 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 5-422 |
| Cow position: | chr13:20541941-20541534 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 142 |
| Conread position: | 5-423 |
| Cow position: | chr13:3654227-3653815 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 147 |
| Conread position: | 9-257 |
| Cow position: | chr13:34911064-34910822 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 12-206 |
| Cow position: | chr13:22766123-22766318 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 140 |
| Conread position: | 13-422 |
| Cow position: | chr13:17308568-17308976 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 13-423 |
| Cow position: | chr13:30244585-30244176 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 133 |
| Conread position: | 13-423 |
| Cow position: | chr13:30656880-30656477 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 13-423 |
| Cow position: | chr13:32985253-32984846 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-423 |
| Cow position: | chr13:60466430-60466833 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 19-423 |
| Cow position: | chr13:58118808-58118405 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 131 |
| Conread position: | 28-251 |
| Cow position: | chr13:26844211-26844424 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 28-333 |
| Cow position: | chr13:22831571-22831274 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 134, 116 |
| Conread position: | 28-423 |
| Cow position: | chr13:21840085-21839695 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 28-423 |
| Cow position: | chr13:31612189-31611797 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 118 |
| Conread position: | 28-423 |
| Cow position: | chr13:32545496-32545886 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 28-423 |
| Cow position: | chr13:41315972-41316362 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 29-372 |
| Cow position: | chr13:57023822-57024155 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 65, 50 |
| Conread position: | 29-423 |
| Cow position: | chr13:35030667-35031043 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 66 |
| Conread position: | 32-382 |
| Cow position: | chr13:676980-677337 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 114 |
| Conread position: | 53-423 |
| Cow position: | chr13:13900010-13900374 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 199-422 |
| Cow position: | chr13:16255095-16254876 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 220-423 |
| Cow position: | chr13:11798588-11798397 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.