Cow genome map

Conread name: rtra32_o15.y1

Conread position: 1-187
Cow position: chr15:2012039-2012227 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 27, 154

Conread position: 1-238
Cow position: chr15:42320462-42320225 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 183
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 32, 140

Conread position: 1-256
Cow position: chr15:7787741-7787488 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 18

Conread position: 1-256
Cow position: chr15:51216553-51216805 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 32, 150

Conread position: 1-278
Cow position: chr15:3842465-3842181 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 32, 147

Conread position: 1-282
Cow position: chr15:7260593-7260866 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 17, 151

Conread position: 1-342
Cow position: chr15:12421201-12420860 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 67

Conread position: 1-379
Cow position: chr15:51714922-51715300 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-412
Cow position: chr15:44069889-44070299 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 148

Conread position: 1-415
Cow position: chr15:17292403-17292836 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 1-419
Cow position: chr15:32673583-32673182 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 94

Conread position: 1-421
Cow position: chr15:2647697-2647275 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 151

Conread position: 1-421
Cow position: chr15:17080243-17079826 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-421
Cow position: chr15:35735543-35735958 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 90

Conread position: 1-421
Cow position: chr15:42936679-42937092 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 74

Conread position: 1-423
Cow position: chr15:315895-315474 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 150

Conread position: 1-423
Cow position: chr15:1237653-1238063 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 46

Conread position: 1-423
Cow position: chr15:1519191-1518772 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 150

Conread position: 1-423
Cow position: chr15:1772457-1772879 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 150

Conread position: 1-423
Cow position: chr15:1882547-1882125 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 150

Conread position: 1-423
Cow position: chr15:2076613-2077031 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 95

Conread position: 1-423
Cow position: chr15:3009892-3009472 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 96

Conread position: 1-423
Cow position: chr15:4196421-4196843 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 150

Conread position: 1-423
Cow position: chr15:4922115-4922532 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr15:4961611-4962019 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 76

Conread position: 1-423
Cow position: chr15:6155988-6155562 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 157

Conread position: 1-423
Cow position: chr15:6471959-6471538 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 68

Conread position: 1-423
Cow position: chr15:7544846-7545259 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 129

Conread position: 1-423
Cow position: chr15:7837209-7837630 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr15:7934295-7934712 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 91

Conread position: 1-423
Cow position: chr15:15347154-15346731 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 90

Conread position: 1-423
Cow position: chr15:18268028-18267606 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr15:18576679-18577098 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 108

Conread position: 1-423
Cow position: chr15:19738088-19737669 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr15:21665781-21665364 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr15:24295059-24295479 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr15:28490182-28489767 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 13

Conread position: 1-423
Cow position: chr15:31358851-31359264 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr15:32494422-32494003 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 1-423
Cow position: chr15:36626330-36625888 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 161

Conread position: 1-424
Cow position: chr15:328392-328794 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 281
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 32, 147

Conread position: 1-425
Cow position: chr15:44828759-44829183 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 150

Conread position: 2-423
Cow position: chr15:444567-444986 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 149

Conread position: 3-249
Cow position: chr15:9912603-9912844 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 30, 93

Conread position: 3-343
Cow position: chr15:35753630-35753286 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 148

Conread position: 3-423
Cow position: chr15:19817940-19818347 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 32

Conread position: 4-423
Cow position: chr15:6078725-6079133 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 63

Conread position: 4-423
Cow position: chr15:35647699-35647286 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 142

Conread position: 5-217
Cow position: chr15:17218435-17218223 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 76

Conread position: 5-423
Cow position: chr15:8099457-8099860 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 92

Conread position: 7-423
Cow position: chr15:6553843-6553440 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 8

Conread position: 8-423
Cow position: chr15:7549375-7549780 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 10-206
Cow position: chr15:7234277-7234468 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 19, 61

Conread position: 10-422
Cow position: chr15:369183-368792 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 137

Conread position: 10-423
Cow position: chr15:18332850-18332445 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 76

Conread position: 10-423
Cow position: chr15:37392468-37392876 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 137

Conread position: 11-423
Cow position: chr15:3261355-3260937 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 136

Conread position: 12-186
Cow position: chr15:53339000-53339168 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 12-296
Cow position: chr15:4765181-4765465 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 21, 139

Conread position: 12-378
Cow position: chr15:8750402-8750751 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 62

Conread position: 12-419
Cow position: chr15:1764070-1764468 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 51

Conread position: 12-419
Cow position: chr15:4651344-4651741 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 31

Conread position: 13-210
Cow position: chr15:29009810-29010008 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 20, 138

Conread position: 13-352
Cow position: chr15:5980333-5980675 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 139

Conread position: 13-423
Cow position: chr15:1834491-1834089 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 121

Conread position: 13-423
Cow position: chr15:4142847-4142437 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 14-423
Cow position: chr15:524883-524476 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 140

Conread position: 14-423
Cow position: chr15:10888593-10888999 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 59

Conread position: 14-423
Cow position: chr15:36970896-36971298 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 91

Conread position: 15-423
Cow position: chr15:7894254-7893852 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 85

Conread position: 23-332
Cow position: chr15:2591778-2591473 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 181
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 15, 125

Conread position: 27-281
Cow position: chr15:24794345-24794592 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 61, 120

Conread position: 28-199
Cow position: chr15:41366168-41366332 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 28-216
Cow position: chr15:36077238-36077422 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 118, 0

Conread position: 28-324
Cow position: chr15:4385264-4385551 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 28-422
Cow position: chr15:4812599-4812980 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 118

Conread position: 28-422
Cow position: chr15:50123951-50123562 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 0

Conread position: 28-423
Cow position: chr15:14582354-14581977 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 32-422
Cow position: chr15:32720742-32720360 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 116

Conread position: 32-423
Cow position: chr15:3888872-3889260 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 114

Conread position: 37-423
Cow position: chr15:32711101-32711474 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 112

Conread position: 44-423
Cow position: chr15:56500-56861 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 265
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 57

Conread position: 57-423
Cow position: chr15:789552-789191 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 60-277
Cow position: chr15:690800-691009 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 86, 0

Conread position: 64-423
Cow position: chr15:38980697-38981051 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 75-423
Cow position: chr15:32693617-32693951 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 63

Conread position: 111-418
Cow position: chr15:32203738-32204027 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 115-420
Cow position: chr15:4678384-4678685 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 34

Conread position: 237-423
Cow position: chr15:6592429-6592236 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 23, 29

Show alignments to all cow chromosomes.