Cow genome map

Conread name: rtra32_o15.y1

Conread position: 1-169
Cow position: chr16:18687511-18687341 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 150

Conread position: 1-257
Cow position: chr16:25156258-25156004 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 32, 74

Conread position: 1-324
Cow position: chr16:31832243-31832566 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 139

Conread position: 1-327
Cow position: chr16:2239122-2238816 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 32, 101

Conread position: 1-333
Cow position: chr16:5483937-5484267 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-348
Cow position: chr16:16271979-16271648 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 249
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 33, 137

Conread position: 1-348
Cow position: chr16:49235213-49234867 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 145

Conread position: 1-359
Cow position: chr16:15184421-15184765 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 101

Conread position: 1-377
Cow position: chr16:23252888-23252516 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 135

Conread position: 1-387
Cow position: chr16:23808038-23808426 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 151

Conread position: 1-422
Cow position: chr16:9930552-9930970 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 150

Conread position: 1-423
Cow position: chr16:407414-406995 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr16:1567836-1567414 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr16:2411350-2410928 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr16:2483522-2483101 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 47

Conread position: 1-423
Cow position: chr16:2727670-2727249 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr16:5661461-5661882 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 95

Conread position: 1-423
Cow position: chr16:8816488-8816066 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr16:12538308-12537886 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr16:25341583-25341995 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 151

Conread position: 1-423
Cow position: chr16:25441242-25441665 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 155

Conread position: 1-423
Cow position: chr16:25457847-25457425 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr16:26663367-26663788 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 155

Conread position: 1-423
Cow position: chr16:28170753-28170333 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 56

Conread position: 1-423
Cow position: chr16:29033666-29034089 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 11

Conread position: 1-423
Cow position: chr16:29046640-29047061 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr16:40296560-40296138 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr16:41163448-41163033 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr16:43897653-43897234 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-425
Cow position: chr16:23982928-23983350 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 3-423
Cow position: chr16:10203814-10203400 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 3-423
Cow position: chr16:28471482-28471063 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 56

Conread position: 4-423
Cow position: chr16:24105325-24105741 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 66

Conread position: 5-423
Cow position: chr16:10437863-10438275 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 146

Conread position: 6-333
Cow position: chr16:42739474-42739160 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 23, 65

Conread position: 6-392
Cow position: chr16:836672-837050 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 142

Conread position: 6-423
Cow position: chr16:14666190-14665774 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 145

Conread position: 8-423
Cow position: chr16:25257565-25257975 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 141

Conread position: 9-378
Cow position: chr16:15566369-15566735 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 139

Conread position: 11-317
Cow position: chr16:25892346-25892650 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 24, 64

Conread position: 12-423
Cow position: chr16:31592285-31591881 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 139

Conread position: 13-333
Cow position: chr16:47473200-47473524 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 223
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 77

Conread position: 13-342
Cow position: chr16:25188259-25188582 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-343
Cow position: chr16:53045977-53046307 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 138

Conread position: 13-423
Cow position: chr16:32362-32771 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position: chr16:34529951-34530351 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 136

Conread position: 23-223
Cow position: chr16:36232095-36231903 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 122, 0

Conread position: 28-256
Cow position: chr16:18498668-18498448 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 118, 0

Conread position: 28-333
Cow position: chr16:26516767-26516467 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 202
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 70, 103

Conread position: 28-378
Cow position: chr16:15492878-15493221 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 118

Conread position: 28-421
Cow position: chr16:48915503-48915119 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 251
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 57, 119

Conread position: 50-421
Cow position: chr16:4479312-4478946 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 54-422
Cow position: chr16:15476518-15476879 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 95

Conread position: 54-423
Cow position: chr16:28198004-28197639 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 92

Conread position: 82-423
Cow position: chr16:1431888-1432228 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 65

Conread position: 106-327
Cow position: chr16:6943330-6943546 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 114-387
Cow position: chr16:37456290-37456024 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 167-423
Cow position: chr16:10375814-10375560 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 215-419
Cow position: chr16:26374425-26374626 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 26, 0

Conread position: 234-425
Cow position: chr16:23536037-23535849 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 32, 0

Show alignments to all cow chromosomes.