Cow genome map
Conread name: | rtra32_o15.y1 |
Conread position: | 1-169 |
Cow position: | chr16:18687511-18687341 (view UCSC Genome Browser custom track) |
Alignm length: | 174 |
Alignm identity: | 130 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-257 |
Cow position: | chr16:25156258-25156004 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 191 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 32, 74 |
Conread position: | 1-324 |
Cow position: | chr16:31832243-31832566 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 139 |
Conread position: | 1-327 |
Cow position: | chr16:2239122-2238816 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 236 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 32, 101 |
Conread position: | 1-333 |
Cow position: | chr16:5483937-5484267 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-348 |
Cow position: | chr16:16271979-16271648 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 249 |
Alignm E-value: | 6.00036e-42 |
Alignm gaps (pig, cow): | 33, 137 |
Conread position: | 1-348 |
Cow position: | chr16:49235213-49234867 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 145 |
Conread position: | 1-359 |
Cow position: | chr16:15184421-15184765 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 101 |
Conread position: | 1-377 |
Cow position: | chr16:23252888-23252516 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 135 |
Conread position: | 1-387 |
Cow position: | chr16:23808038-23808426 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 151 |
Conread position: | 1-422 |
Cow position: | chr16:9930552-9930970 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 150 |
Conread position: | 1-423 |
Cow position: | chr16:407414-406995 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr16:1567836-1567414 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-423 |
Cow position: | chr16:2411350-2410928 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-423 |
Cow position: | chr16:2483522-2483101 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 47 |
Conread position: | 1-423 |
Cow position: | chr16:2727670-2727249 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr16:5661461-5661882 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 95 |
Conread position: | 1-423 |
Cow position: | chr16:8816488-8816066 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-423 |
Cow position: | chr16:12538308-12537886 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-423 |
Cow position: | chr16:25341583-25341995 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 151 |
Conread position: | 1-423 |
Cow position: | chr16:25441242-25441665 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 155 |
Conread position: | 1-423 |
Cow position: | chr16:25457847-25457425 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-423 |
Cow position: | chr16:26663367-26663788 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 155 |
Conread position: | 1-423 |
Cow position: | chr16:28170753-28170333 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 56 |
Conread position: | 1-423 |
Cow position: | chr16:29033666-29034089 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 11 |
Conread position: | 1-423 |
Cow position: | chr16:29046640-29047061 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-423 |
Cow position: | chr16:40296560-40296138 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr16:41163448-41163033 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr16:43897653-43897234 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-425 |
Cow position: | chr16:23982928-23983350 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 3-423 |
Cow position: | chr16:10203814-10203400 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 0 |
Conread position: | 3-423 |
Cow position: | chr16:28471482-28471063 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 56 |
Conread position: | 4-423 |
Cow position: | chr16:24105325-24105741 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 66 |
Conread position: | 5-423 |
Cow position: | chr16:10437863-10438275 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 146 |
Conread position: | 6-333 |
Cow position: | chr16:42739474-42739160 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 242 |
Alignm E-value: | 8.40779e-45 |
Alignm gaps (pig, cow): | 23, 65 |
Conread position: | 6-392 |
Cow position: | chr16:836672-837050 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 142 |
Conread position: | 6-423 |
Cow position: | chr16:14666190-14665774 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 145 |
Conread position: | 8-423 |
Cow position: | chr16:25257565-25257975 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 141 |
Conread position: | 9-378 |
Cow position: | chr16:15566369-15566735 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 139 |
Conread position: | 11-317 |
Cow position: | chr16:25892346-25892650 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 221 |
Alignm E-value: | 6.00036e-42 |
Alignm gaps (pig, cow): | 24, 64 |
Conread position: | 12-423 |
Cow position: | chr16:31592285-31591881 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 139 |
Conread position: | 13-333 |
Cow position: | chr16:47473200-47473524 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 223 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 20, 77 |
Conread position: | 13-342 |
Cow position: | chr16:25188259-25188582 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 138 |
Conread position: | 13-343 |
Cow position: | chr16:53045977-53046307 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 138 |
Conread position: | 13-423 |
Cow position: | chr16:32362-32771 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 138 |
Conread position: | 13-423 |
Cow position: | chr16:34529951-34530351 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 136 |
Conread position: | 23-223 |
Cow position: | chr16:36232095-36231903 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 143 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 122, 0 |
Conread position: | 28-256 |
Cow position: | chr16:18498668-18498448 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 171 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 118, 0 |
Conread position: | 28-333 |
Cow position: | chr16:26516767-26516467 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 202 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 70, 103 |
Conread position: | 28-378 |
Cow position: | chr16:15492878-15493221 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 182, 118 |
Conread position: | 28-421 |
Cow position: | chr16:48915503-48915119 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 251 |
Alignm E-value: | 9e-24 |
Alignm gaps (pig, cow): | 57, 119 |
Conread position: | 50-421 |
Cow position: | chr16:4479312-4478946 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 0 |
Conread position: | 54-422 |
Cow position: | chr16:15476518-15476879 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 237, 95 |
Conread position: | 54-423 |
Cow position: | chr16:28198004-28197639 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 92 |
Conread position: | 82-423 |
Cow position: | chr16:1431888-1432228 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 65 |
Conread position: | 106-327 |
Cow position: | chr16:6943330-6943546 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 178 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 114-387 |
Cow position: | chr16:37456290-37456024 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 167-423 |
Cow position: | chr16:10375814-10375560 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 215-419 |
Cow position: | chr16:26374425-26374626 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 150 |
Alignm E-value: | 8e-34 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 234-425 |
Cow position: | chr16:23536037-23535849 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 146 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.