Cow genome map
| Conread name: | rtra32_o15.y1 |
| Conread position: | 1-227 |
| Cow position: | chr2:50983379-50983153 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 1-234 |
| Cow position: | chr2:63978158-63978390 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 1-242 |
| Cow position: | chr2:81256654-81256900 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 1-271 |
| Cow position: | chr2:52062517-52062786 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 100 |
| Conread position: | 1-303 |
| Cow position: | chr2:54737349-54737651 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 150 |
| Conread position: | 1-327 |
| Cow position: | chr2:78762310-78762615 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 32, 63 |
| Conread position: | 1-342 |
| Cow position: | chr2:28650382-28650042 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 1-357 |
| Cow position: | chr2:57588539-57588895 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 150 |
| Conread position: | 1-364 |
| Cow position: | chr2:12224464-12224096 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 150 |
| Conread position: | 1-421 |
| Cow position: | chr2:19011190-19011608 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-422 |
| Cow position: | chr2:781590-781177 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 150 |
| Conread position: | 1-422 |
| Cow position: | chr2:8118386-8118805 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-422 |
| Cow position: | chr2:24146709-24147133 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 1-422 |
| Cow position: | chr2:32066227-32065817 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 1-422 |
| Cow position: | chr2:41172520-41172931 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 34 |
| Conread position: | 1-423 |
| Cow position: | chr2:198942-198523 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr2:2380951-2381369 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 1-423 |
| Cow position: | chr2:3324721-3324295 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 1-423 |
| Cow position: | chr2:4403314-4402894 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 150 |
| Conread position: | 1-423 |
| Cow position: | chr2:5474359-5474781 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 150 |
| Conread position: | 1-423 |
| Cow position: | chr2:7902870-7903306 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 27 |
| Conread position: | 1-423 |
| Cow position: | chr2:9907756-9908178 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr2:10268810-10268393 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr2:10732921-10732509 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr2:11159277-11158854 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr2:13045856-13045439 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr2:16900099-16900517 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr2:22077627-22078049 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 1-423 |
| Cow position: | chr2:28793102-28793512 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr2:36980225-36980646 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 1-423 |
| Cow position: | chr2:44991447-44991030 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 138 |
| Conread position: | 1-423 |
| Cow position: | chr2:51990405-51989990 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 1-423 |
| Cow position: | chr2:53329603-53330022 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 151 |
| Conread position: | 1-423 |
| Cow position: | chr2:65938601-65938185 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 149 |
| Conread position: | 1-423 |
| Cow position: | chr2:80293104-80292687 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr2:80955793-80955374 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 150 |
| Conread position: | 2-298 |
| Cow position: | chr2:39421423-39421717 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 149 |
| Conread position: | 3-343 |
| Cow position: | chr2:35355548-35355881 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 3-419 |
| Cow position: | chr2:5485125-5484719 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 150 |
| Conread position: | 3-423 |
| Cow position: | chr2:282841-282425 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 148 |
| Conread position: | 3-423 |
| Cow position: | chr2:10186381-10185960 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 3-423 |
| Cow position: | chr2:45919714-45919301 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 29, 147 |
| Conread position: | 5-423 |
| Cow position: | chr2:40538339-40538741 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 5-423 |
| Cow position: | chr2:50077457-50077865 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 6-422 |
| Cow position: | chr2:49604793-49605208 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 9-201 |
| Cow position: | chr2:69584768-69584575 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 9-384 |
| Cow position: | chr2:5905006-5904638 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 133 |
| Conread position: | 10-359 |
| Cow position: | chr2:175670-175324 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 138 |
| Conread position: | 10-419 |
| Cow position: | chr2:47038558-47038153 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 10-423 |
| Cow position: | chr2:3835112-3834696 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 149 |
| Conread position: | 10-423 |
| Cow position: | chr2:36030475-36030087 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 11-421 |
| Cow position: | chr2:28620167-28619770 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 136 |
| Conread position: | 12-338 |
| Cow position: | chr2:28642956-28642642 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 89 |
| Conread position: | 12-420 |
| Cow position: | chr2:16290196-16290597 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 139 |
| Conread position: | 13-285 |
| Cow position: | chr2:67419445-67419170 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-332 |
| Cow position: | chr2:5870496-5870188 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 137 |
| Conread position: | 13-423 |
| Cow position: | chr2:10611771-10611371 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 90 |
| Conread position: | 13-423 |
| Cow position: | chr2:36053134-36052743 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 89 |
| Conread position: | 13-423 |
| Cow position: | chr2:47603390-47602983 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 138 |
| Conread position: | 13-423 |
| Cow position: | chr2:49472102-49472512 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 13-423 |
| Cow position: | chr2:52616325-52616736 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-423 |
| Cow position: | chr2:57335051-57335461 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 14-423 |
| Cow position: | chr2:41686370-41686774 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 18-378 |
| Cow position: | chr2:42671126-42670769 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 133 |
| Conread position: | 20-423 |
| Cow position: | chr2:31297665-31298062 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 28-193 |
| Cow position: | chr2:6961340-6961502 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 28-257 |
| Cow position: | chr2:44091176-44091400 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 28-413 |
| Cow position: | chr2:44935045-44934661 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 79 |
| Conread position: | 28-414 |
| Cow position: | chr2:212347-211969 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 28-423 |
| Cow position: | chr2:2412921-2412532 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 118 |
| Conread position: | 28-423 |
| Cow position: | chr2:5813503-5813128 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 28-423 |
| Cow position: | chr2:14822998-14823367 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 28-423 |
| Cow position: | chr2:49590276-49590666 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 28-423 |
| Cow position: | chr2:59413805-59413419 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 29-283 |
| Cow position: | chr2:39631586-39631832 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 135, 63 |
| Conread position: | 33-423 |
| Cow position: | chr2:41657063-41657440 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 95-272 |
| Cow position: | chr2:12202972-12202806 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 134-422 |
| Cow position: | chr2:34051153-34051431 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 268, 14 |
| Conread position: | 157-423 |
| Cow position: | chr2:47810848-47811110 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 190-425 |
| Cow position: | chr2:73193152-73193383 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 196-423 |
| Cow position: | chr2:12480028-12479802 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 236-414 |
| Cow position: | chr2:6961606-6961780 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 248-423 |
| Cow position: | chr2:67420855-67420685 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 266-423 |
| Cow position: | chr2:53661453-53661610 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.