Cow genome map

Conread name: rtra32_o15.y1

Conread position: 1-177
Cow position: chr21:6340043-6340221 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 34, 150

Conread position: 1-191
Cow position: chr21:46916064-46916251 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 131

Conread position: 1-260
Cow position: chr21:26650518-26650782 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 157
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 34, 150

Conread position: 1-297
Cow position: chr21:21518003-21518294 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 34, 146

Conread position: 1-298
Cow position: chr21:359851-360136 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 1-319
Cow position: chr21:33251990-33252301 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 73

Conread position: 1-324
Cow position: chr21:21925841-21925516 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 32, 155

Conread position: 1-346
Cow position: chr21:2511372-2511717 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-378
Cow position: chr21:30562286-30562659 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-378
Cow position: chr21:31559176-31558804 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-386
Cow position: chr21:23812660-23813039 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 10

Conread position: 1-408
Cow position: chr21:4091126-4091532 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 15

Conread position: 1-421
Cow position: chr21:4589508-4589099 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 150

Conread position: 1-422
Cow position: chr21:21915170-21915587 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 290
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 34, 126

Conread position: 1-423
Cow position: chr21:146406-146826 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr21:467373-467775 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 83

Conread position: 1-423
Cow position: chr21:2540600-2540193 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 11

Conread position: 1-423
Cow position: chr21:2883265-2882841 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 155

Conread position: 1-423
Cow position: chr21:3779250-3779665 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 155

Conread position: 1-423
Cow position: chr21:9892416-9892806 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 296
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 31, 150

Conread position: 1-423
Cow position: chr21:10567152-10567574 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr21:10850560-10850977 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr21:11453179-11452760 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 150

Conread position: 1-423
Cow position: chr21:11506073-11506494 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 152

Conread position: 1-423
Cow position: chr21:12055524-12055105 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr21:30599444-30599025 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr21:35144240-35144659 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 1-423
Cow position: chr21:37046097-37046519 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr21:39425540-39425960 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 91

Conread position: 1-423
Cow position: chr21:40271197-40270775 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr21:48116584-48116999 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 2-308
Cow position: chr21:25975756-25976062 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 214
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 31, 129

Conread position: 3-423
Cow position: chr21:4077315-4077733 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 101

Conread position: 3-423
Cow position: chr21:28735715-28736135 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 148

Conread position: 5-313
Cow position: chr21:7267044-7266743 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 145

Conread position: 5-346
Cow position: chr21:27282880-27283214 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 12

Conread position: 9-227
Cow position: chr21:12803564-12803347 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 24, 68

Conread position: 10-423
Cow position: chr21:2416710-2417112 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 12-421
Cow position: chr21:29576-29976 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 136

Conread position: 12-423
Cow position: chr21:13313260-13313660 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 139

Conread position: 13-384
Cow position: chr21:2476052-2475681 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 138

Conread position: 13-384
Cow position: chr21:11406507-11406136 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 138

Conread position: 13-422
Cow position: chr21:47949555-47949957 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 107

Conread position: 13-423
Cow position: chr21:37371734-37372138 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-424
Cow position: chr21:1287729-1287320 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 84

Conread position: 15-329
Cow position: chr21:18819672-18819356 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 136

Conread position: 28-359
Cow position: chr21:27070752-27070426 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 28-423
Cow position: chr21:1192267-1192657 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 28-423
Cow position: chr21:2711013-2711387 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 28-423
Cow position: chr21:39087518-39087904 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 357, 35

Conread position: 28-423
Cow position: chr21:47941368-47941755 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 106-423
Cow position: chr21:26637610-26637306 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 111-274
Cow position: chr21:28255795-28255961 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 101, 35

Conread position: 184-423
Cow position: chr21:5015631-5015408 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 220, 15

Conread position: 184-423
Cow position: chr21:5840604-5840367 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 285-423
Cow position: chr21:4184663-4184801 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.