Cow genome map
Conread name: | rtra32_o15.y1 |
Conread position: | 1-177 |
Cow position: | chr21:6340043-6340221 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 133 |
Alignm E-value: | 9e-26 |
Alignm gaps (pig, cow): | 34, 150 |
Conread position: | 1-191 |
Cow position: | chr21:46916064-46916251 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 141 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 34, 131 |
Conread position: | 1-260 |
Cow position: | chr21:26650518-26650782 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 157 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 34, 150 |
Conread position: | 1-297 |
Cow position: | chr21:21518003-21518294 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 212 |
Alignm E-value: | 7.00649e-44 |
Alignm gaps (pig, cow): | 34, 146 |
Conread position: | 1-298 |
Cow position: | chr21:359851-360136 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 0 |
Conread position: | 1-319 |
Cow position: | chr21:33251990-33252301 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 73 |
Conread position: | 1-324 |
Cow position: | chr21:21925841-21925516 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 227 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 32, 155 |
Conread position: | 1-346 |
Cow position: | chr21:2511372-2511717 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-378 |
Cow position: | chr21:30562286-30562659 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-378 |
Cow position: | chr21:31559176-31558804 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-386 |
Cow position: | chr21:23812660-23813039 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 10 |
Conread position: | 1-408 |
Cow position: | chr21:4091126-4091532 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 15 |
Conread position: | 1-421 |
Cow position: | chr21:4589508-4589099 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 150 |
Conread position: | 1-422 |
Cow position: | chr21:21915170-21915587 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 290 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 34, 126 |
Conread position: | 1-423 |
Cow position: | chr21:146406-146826 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr21:467373-467775 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 83 |
Conread position: | 1-423 |
Cow position: | chr21:2540600-2540193 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 11 |
Conread position: | 1-423 |
Cow position: | chr21:2883265-2882841 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 155 |
Conread position: | 1-423 |
Cow position: | chr21:3779250-3779665 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 155 |
Conread position: | 1-423 |
Cow position: | chr21:9892416-9892806 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 296 |
Alignm E-value: | 6.00036e-42 |
Alignm gaps (pig, cow): | 31, 150 |
Conread position: | 1-423 |
Cow position: | chr21:10567152-10567574 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr21:10850560-10850977 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-423 |
Cow position: | chr21:11453179-11452760 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 150 |
Conread position: | 1-423 |
Cow position: | chr21:11506073-11506494 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 152 |
Conread position: | 1-423 |
Cow position: | chr21:12055524-12055105 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr21:30599444-30599025 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-423 |
Cow position: | chr21:35144240-35144659 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 152 |
Conread position: | 1-423 |
Cow position: | chr21:37046097-37046519 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr21:39425540-39425960 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 91 |
Conread position: | 1-423 |
Cow position: | chr21:40271197-40270775 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-423 |
Cow position: | chr21:48116584-48116999 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 2-308 |
Cow position: | chr21:25975756-25976062 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 214 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 31, 129 |
Conread position: | 3-423 |
Cow position: | chr21:4077315-4077733 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 101 |
Conread position: | 3-423 |
Cow position: | chr21:28735715-28736135 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 148 |
Conread position: | 5-313 |
Cow position: | chr21:7267044-7266743 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 145 |
Conread position: | 5-346 |
Cow position: | chr21:27282880-27283214 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 12 |
Conread position: | 9-227 |
Cow position: | chr21:12803564-12803347 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 157 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 24, 68 |
Conread position: | 10-423 |
Cow position: | chr21:2416710-2417112 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 39 |
Conread position: | 12-421 |
Cow position: | chr21:29576-29976 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 136 |
Conread position: | 12-423 |
Cow position: | chr21:13313260-13313660 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 139 |
Conread position: | 13-384 |
Cow position: | chr21:2476052-2475681 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 138 |
Conread position: | 13-384 |
Cow position: | chr21:11406507-11406136 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 138 |
Conread position: | 13-422 |
Cow position: | chr21:47949555-47949957 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 107 |
Conread position: | 13-423 |
Cow position: | chr21:37371734-37372138 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 138 |
Conread position: | 13-424 |
Cow position: | chr21:1287729-1287320 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 84 |
Conread position: | 15-329 |
Cow position: | chr21:18819672-18819356 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 136 |
Conread position: | 28-359 |
Cow position: | chr21:27070752-27070426 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 0 |
Conread position: | 28-423 |
Cow position: | chr21:1192267-1192657 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 0 |
Conread position: | 28-423 |
Cow position: | chr21:2711013-2711387 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 0 |
Conread position: | 28-423 |
Cow position: | chr21:39087518-39087904 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 264 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 357, 35 |
Conread position: | 28-423 |
Cow position: | chr21:47941368-47941755 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 0 |
Conread position: | 106-423 |
Cow position: | chr21:26637610-26637306 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 111-274 |
Cow position: | chr21:28255795-28255961 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 130 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 101, 35 |
Conread position: | 184-423 |
Cow position: | chr21:5015631-5015408 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 186 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 220, 15 |
Conread position: | 184-423 |
Cow position: | chr21:5840604-5840367 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 187 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 285-423 |
Cow position: | chr21:4184663-4184801 (view UCSC Genome Browser custom track) |
Alignm length: | 139 |
Alignm identity: | 107 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.