Cow genome map
| Conread name: | rtra32_o15.y1 |
| Conread position: | 1-234 |
| Cow position: | chr28:29820089-29820322 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 32, 142 |
| Conread position: | 1-255 |
| Cow position: | chr28:14913871-14914127 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 124 |
| Conread position: | 1-257 |
| Cow position: | chr28:3020395-3020143 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 32, 139 |
| Conread position: | 1-257 |
| Cow position: | chr28:10581630-10581373 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-271 |
| Cow position: | chr28:10229867-10229595 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-286 |
| Cow position: | chr28:2083949-2084229 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 74 |
| Conread position: | 1-327 |
| Cow position: | chr28:34594334-34594659 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 66 |
| Conread position: | 1-342 |
| Cow position: | chr28:782748-783087 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-364 |
| Cow position: | chr28:10497660-10497308 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 114 |
| Conread position: | 1-382 |
| Cow position: | chr28:7822606-7822987 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-420 |
| Cow position: | chr28:5113943-5113527 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-421 |
| Cow position: | chr28:7789596-7789177 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 1-422 |
| Cow position: | chr28:12150658-12151076 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 1-423 |
| Cow position: | chr28:1167527-1167105 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr28:1814512-1814092 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 1-423 |
| Cow position: | chr28:1953478-1953902 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 148 |
| Conread position: | 1-423 |
| Cow position: | chr28:2724574-2724152 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr28:2988885-2988466 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 1-423 |
| Cow position: | chr28:3191891-3191482 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 1-423 |
| Cow position: | chr28:5566500-5566926 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 157 |
| Conread position: | 1-423 |
| Cow position: | chr28:5751350-5750926 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr28:5937831-5938256 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 126 |
| Conread position: | 1-423 |
| Cow position: | chr28:7002345-7002767 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 1-423 |
| Cow position: | chr28:7740834-7741243 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 155 |
| Conread position: | 1-423 |
| Cow position: | chr28:10071639-10072047 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 1-423 |
| Cow position: | chr28:12409873-12409454 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr28:13460324-13460745 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 1-423 |
| Cow position: | chr28:17388838-17389254 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 108 |
| Conread position: | 1-423 |
| Cow position: | chr28:24667965-24668390 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 22, 68 |
| Conread position: | 1-423 |
| Cow position: | chr28:26425896-26425484 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr28:32792025-32791603 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 1-424 |
| Cow position: | chr28:6779988-6779566 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 153 |
| Conread position: | 1-425 |
| Cow position: | chr28:17666943-17666528 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 108 |
| Conread position: | 1-425 |
| Cow position: | chr28:22260796-22260378 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 3-423 |
| Cow position: | chr28:1505222-1505641 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 148 |
| Conread position: | 3-423 |
| Cow position: | chr28:33252669-33253075 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 5-348 |
| Cow position: | chr28:26489663-26490001 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 11, 155 |
| Conread position: | 5-423 |
| Cow position: | chr28:10647026-10646629 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 6-423 |
| Cow position: | chr28:18520082-18519674 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 113 |
| Conread position: | 7-339 |
| Cow position: | chr28:5813370-5813702 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 144 |
| Conread position: | 10-401 |
| Cow position: | chr28:5798114-5798495 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 10-420 |
| Cow position: | chr28:1387036-1386632 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 13-192 |
| Cow position: | chr28:24588450-24588633 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 139 |
| Conread position: | 13-244 |
| Cow position: | chr28:485202-484971 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-250 |
| Cow position: | chr28:8720931-8720694 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-423 |
| Cow position: | chr28:6538901-6538492 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 138 |
| Conread position: | 13-423 |
| Cow position: | chr28:14750907-14751313 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 13-423 |
| Cow position: | chr28:24589212-24589624 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 142 |
| Conread position: | 21-425 |
| Cow position: | chr28:33259019-33259412 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 23-207 |
| Cow position: | chr28:7882017-7881837 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 11, 86 |
| Conread position: | 32-384 |
| Cow position: | chr28:22233015-22232671 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 35-421 |
| Cow position: | chr28:5765156-5765523 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 47-208 |
| Cow position: | chr28:7880928-7881085 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 82-395 |
| Cow position: | chr28:8379274-8379581 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 106-423 |
| Cow position: | chr28:21359940-21360252 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 40 |
| Conread position: | 150-423 |
| Cow position: | chr28:14704884-14704616 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 204-423 |
| Cow position: | chr28:15035536-15035325 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 206-422 |
| Cow position: | chr28:8720390-8720180 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 226-423 |
| Cow position: | chr28:29820581-29820777 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 237-423 |
| Cow position: | chr28:32627157-32626976 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 239-418 |
| Cow position: | chr28:7881853-7881679 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
Show alignments to all cow chromosomes.