Cow genome map

Conread name: rtra32_o15.y1

Conread position: 1-190
Cow position: chr3:24591080-24590898 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 67, 0

Conread position: 1-215
Cow position: chr3:74439535-74439750 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 32, 150

Conread position: 1-239
Cow position: chr3:77424043-77424284 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 32, 150

Conread position: 1-254
Cow position: chr3:66991329-66991573 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 32, 152

Conread position: 1-257
Cow position: chr3:36881682-36881424 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 152

Conread position: 1-294
Cow position: chr3:594815-595108 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-298
Cow position: chr3:41303748-41304044 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 199
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 34, 153

Conread position: 1-313
Cow position: chr3:5995463-5995154 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 148

Conread position: 1-320
Cow position: chr3:49272252-49271935 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 32, 95

Conread position: 1-342
Cow position: chr3:29331039-29330698 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-367
Cow position: chr3:18356265-18355903 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 151

Conread position: 1-371
Cow position: chr3:49613745-49613379 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 151

Conread position: 1-378
Cow position: chr3:18542169-18541796 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 138

Conread position: 1-378
Cow position: chr3:48230217-48229855 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 34

Conread position: 1-386
Cow position: chr3:21259678-21259302 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 253
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 30, 22

Conread position: 1-392
Cow position: chr3:37625212-37625591 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 123

Conread position: 1-408
Cow position: chr3:34030660-34030256 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-419
Cow position: chr3:37969280-37969692 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 52

Conread position: 1-421
Cow position: chr3:18463328-18462918 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 31

Conread position: 1-421
Cow position: chr3:59861604-59862024 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-422
Cow position: chr3:10239892-10240311 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-422
Cow position: chr3:46502772-46503197 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-422
Cow position: chr3:49137300-49136888 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 95

Conread position: 1-423
Cow position: chr3:2917693-2918114 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 56

Conread position: 1-423
Cow position: chr3:3523253-3523673 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 149

Conread position: 1-423
Cow position: chr3:5883777-5884195 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 149

Conread position: 1-423
Cow position: chr3:5953948-5953527 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr3:6686046-6686461 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 70

Conread position: 1-423
Cow position: chr3:19756720-19756297 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 154

Conread position: 1-423
Cow position: chr3:19878889-19879306 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 150

Conread position: 1-423
Cow position: chr3:20380775-20381194 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 1-423
Cow position: chr3:23290104-23289682 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr3:24314699-24315120 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr3:30314805-30315215 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 35

Conread position: 1-423
Cow position: chr3:32841786-32841367 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 282
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 24, 125

Conread position: 1-423
Cow position: chr3:36117894-36118315 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 1-423
Cow position: chr3:40339880-40339461 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 1-423
Cow position: chr3:40823625-40824043 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr3:41211505-41211082 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 152

Conread position: 1-423
Cow position: chr3:42432471-42432873 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 95

Conread position: 1-423
Cow position: chr3:45895319-45894899 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 66

Conread position: 1-423
Cow position: chr3:45974736-45975154 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 66

Conread position: 1-423
Cow position: chr3:46861071-46860650 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr3:49678030-49678454 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 152

Conread position: 1-423
Cow position: chr3:53515851-53516266 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 26

Conread position: 1-423
Cow position: chr3:57484491-57484074 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 108

Conread position: 1-423
Cow position: chr3:58947864-58948267 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 105

Conread position: 1-423
Cow position: chr3:64017128-64016709 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 118

Conread position: 1-423
Cow position: chr3:64027854-64027432 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr3:64650858-64651280 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr3:66890731-66890312 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr3:68873523-68873102 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 151

Conread position: 1-423
Cow position: chr3:72630307-72630727 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 95

Conread position: 1-423
Cow position: chr3:75040931-75040509 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-425
Cow position: chr3:50915564-50915987 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 2-422
Cow position: chr3:47081176-47080761 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-159
Cow position: chr3:64357603-64357439 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 32, 0

Conread position: 3-307
Cow position: chr3:18575954-18575661 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 148, 9

Conread position: 3-423
Cow position: chr3:7480992-7480577 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 108

Conread position: 3-423
Cow position: chr3:21182447-21182041 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 140

Conread position: 3-423
Cow position: chr3:49544970-49544555 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 123

Conread position: 4-351
Cow position: chr3:15178943-15179281 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 243
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 20, 61

Conread position: 4-386
Cow position: chr3:4737738-4737359 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 152

Conread position: 5-324
Cow position: chr3:3981990-3982299 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 28, 115

Conread position: 5-423
Cow position: chr3:56340178-56339765 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 23

Conread position: 9-324
Cow position: chr3:48842410-48842722 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 143

Conread position: 9-423
Cow position: chr3:2907523-2907118 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 92

Conread position: 9-423
Cow position: chr3:52863887-52863478 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 57

Conread position: 10-423
Cow position: chr3:68699728-68699312 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 138

Conread position: 11-423
Cow position: chr3:45774164-45773750 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 281
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 22, 155

Conread position: 11-425
Cow position: chr3:77443607-77444003 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 271
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 20, 136

Conread position: 12-423
Cow position: chr3:18811749-18812160 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 130

Conread position: 13-222
Cow position: chr3:7169036-7169247 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 20, 139

Conread position: 13-352
Cow position: chr3:1516399-1516738 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 138

Conread position: 13-423
Cow position: chr3:6782628-6783024 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position: chr3:18859658-18860064 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 55

Conread position: 13-423
Cow position: chr3:19736824-19737234 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 138

Conread position: 13-423
Cow position: chr3:32622793-32622391 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 140

Conread position: 13-423
Cow position: chr3:45032984-45033399 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position: chr3:46679675-46680081 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 138

Conread position: 13-423
Cow position: chr3:66620423-66620835 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 143

Conread position: 14-422
Cow position: chr3:14439516-14439113 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 137

Conread position: 14-423
Cow position: chr3:19939124-19939544 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 137

Conread position: 14-423
Cow position: chr3:22336133-22336542 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 137

Conread position: 18-299
Cow position: chr3:3054936-3055199 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 68, 0

Conread position: 28-250
Cow position: chr3:70097495-70097709 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 135, 29

Conread position: 28-421
Cow position: chr3:83232966-83232590 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 267
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 71, 0

Conread position: 28-423
Cow position: chr3:7158452-7158073 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 28-423
Cow position: chr3:23213806-23213425 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 28-423
Cow position: chr3:29578897-29579277 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 28-425
Cow position: chr3:52654599-52654225 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 263
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 30-423
Cow position: chr3:63003272-63002894 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 5

Conread position: 32-419
Cow position: chr3:27918703-27919084 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 0

Conread position: 52-423
Cow position: chr3:51242660-51243023 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 75-423
Cow position: chr3:47177965-47177620 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 71

Conread position: 76-385
Cow position: chr3:37953662-37953364 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 197
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 149, 70

Conread position: 82-421
Cow position: chr3:50127334-50126983 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 131

Conread position: 87-383
Cow position: chr3:4286121-4286412 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 59

Conread position: 111-423
Cow position: chr3:2710518-2710217 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 157-423
Cow position: chr3:19890208-19889946 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 194
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 245, 43

Conread position: 183-423
Cow position: chr3:19800762-19800524 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 17

Conread position: 221-423
Cow position: chr3:7247133-7247328 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 234-421
Cow position: chr3:42447570-42447757 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 247-423
Cow position: chr3:4028365-4028538 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 47, 34

Show alignments to all cow chromosomes.