Cow genome map
| Conread name: | rtra32_o15.y1 |
| Conread position: | 1-192 |
| Cow position: | chr5:6155083-6154890 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-221 |
| Cow position: | chr5:59482385-59482607 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 34, 138 |
| Conread position: | 1-222 |
| Cow position: | chr5:49119142-49118922 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-276 |
| Cow position: | chr5:31706705-31706981 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-298 |
| Cow position: | chr5:54932087-54931791 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 140 |
| Conread position: | 1-320 |
| Cow position: | chr5:46660180-46660484 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 64 |
| Conread position: | 1-341 |
| Cow position: | chr5:10843288-10842949 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-353 |
| Cow position: | chr5:41528622-41528275 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-382 |
| Cow position: | chr5:32772613-32773002 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 161 |
| Conread position: | 1-416 |
| Cow position: | chr5:46776210-46776625 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 150 |
| Conread position: | 1-417 |
| Cow position: | chr5:31101489-31101077 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-422 |
| Cow position: | chr5:46664134-46664544 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr5:415584-415163 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 1-423 |
| Cow position: | chr5:2914586-2915003 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr5:3503968-3503562 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 98 |
| Conread position: | 1-423 |
| Cow position: | chr5:6588889-6588468 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 138 |
| Conread position: | 1-423 |
| Cow position: | chr5:7273962-7274385 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 1-423 |
| Cow position: | chr5:10776133-10775715 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr5:10918959-10919379 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 1-423 |
| Cow position: | chr5:18122337-18121924 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 149 |
| Conread position: | 1-423 |
| Cow position: | chr5:18666125-18666547 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr5:23960184-23959762 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 150 |
| Conread position: | 1-423 |
| Cow position: | chr5:24098805-24099226 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr5:27909141-27908719 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 1-423 |
| Cow position: | chr5:30579460-30579883 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 153 |
| Conread position: | 1-423 |
| Cow position: | chr5:46738441-46738020 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-423 |
| Cow position: | chr5:54792497-54792083 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 1-423 |
| Cow position: | chr5:55628124-55628545 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 87 |
| Conread position: | 1-423 |
| Cow position: | chr5:57482408-57481985 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 74 |
| Conread position: | 1-423 |
| Cow position: | chr5:59060749-59061167 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr5:64781880-64781461 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 1-423 |
| Cow position: | chr5:73489423-73489004 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 153 |
| Conread position: | 3-313 |
| Cow position: | chr5:27002173-27002475 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 3-422 |
| Cow position: | chr5:37732486-37732904 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 3-423 |
| Cow position: | chr5:14380282-14380695 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 68 |
| Conread position: | 3-423 |
| Cow position: | chr5:34696741-34697157 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 149 |
| Conread position: | 4-339 |
| Cow position: | chr5:5667916-5667590 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 97 |
| Conread position: | 4-423 |
| Cow position: | chr5:4069355-4069774 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 149 |
| Conread position: | 5-307 |
| Cow position: | chr5:62360576-62360872 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 7-425 |
| Cow position: | chr5:14345562-14345148 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 147 |
| Conread position: | 8-421 |
| Cow position: | chr5:48808584-48808187 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 12-423 |
| Cow position: | chr5:3786074-3786476 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 142 |
| Conread position: | 12-423 |
| Cow position: | chr5:4385391-4385797 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 137 |
| Conread position: | 12-423 |
| Cow position: | chr5:24588912-24589317 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 52 |
| Conread position: | 13-194 |
| Cow position: | chr5:24577058-24577240 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 13-249 |
| Cow position: | chr5:26079077-26078847 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 22, 133 |
| Conread position: | 13-357 |
| Cow position: | chr5:10482991-10483335 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 138 |
| Conread position: | 13-419 |
| Cow position: | chr5:4089214-4089620 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 13-423 |
| Cow position: | chr5:3964595-3965002 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 13-423 |
| Cow position: | chr5:12643576-12643173 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-423 |
| Cow position: | chr5:35300242-35300652 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 13-423 |
| Cow position: | chr5:44459626-44460036 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 13-423 |
| Cow position: | chr5:48468136-48467727 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 14-420 |
| Cow position: | chr5:4019054-4018650 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 24-352 |
| Cow position: | chr5:26084413-26084100 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 25-378 |
| Cow position: | chr5:67594048-67594393 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 70, 61 |
| Conread position: | 28-359 |
| Cow position: | chr5:46644846-46645166 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 28-378 |
| Cow position: | chr5:68470576-68470228 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 222, 95 |
| Conread position: | 28-411 |
| Cow position: | chr5:53625725-53625349 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 75 |
| Conread position: | 28-423 |
| Cow position: | chr5:35525984-35526360 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 263, 104 |
| Conread position: | 29-355 |
| Cow position: | chr5:32309440-32309111 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 180, 117 |
| Conread position: | 32-423 |
| Cow position: | chr5:18663959-18664345 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 33-420 |
| Cow position: | chr5:41555439-41555070 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 69 |
| Conread position: | 35-359 |
| Cow position: | chr5:14658472-14658158 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 62, 118 |
| Conread position: | 52-417 |
| Cow position: | chr5:241389-241749 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 52-423 |
| Cow position: | chr5:2531447-2531808 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 94 |
| Conread position: | 59-351 |
| Cow position: | chr5:69621399-69621687 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 83 |
| Conread position: | 82-423 |
| Cow position: | chr5:45700536-45700868 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 82-423 |
| Cow position: | chr5:58196250-58196577 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 106-423 |
| Cow position: | chr5:47830826-47830518 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 114-422 |
| Cow position: | chr5:41961470-41961171 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 34 |
| Conread position: | 150-423 |
| Cow position: | chr5:1341749-1341478 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 249-423 |
| Cow position: | chr5:29766269-29766442 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 293-425 |
| Cow position: | chr5:49518987-49519119 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.