Cow genome map

Conread name: rtra32_o15.y1

Conread position: 1-145
Cow position: chr6:4508146-4507997 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 1-145
Cow position: chr6:43607426-43607275 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 1-222
Cow position: chr6:3544763-3544986 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 32, 152

Conread position: 1-237
Cow position: chr6:33995048-33994811 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 32

Conread position: 1-277
Cow position: chr6:8202017-8202292 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 56

Conread position: 1-285
Cow position: chr6:55544047-55543762 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 150

Conread position: 1-319
Cow position: chr6:58027032-58027345 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 97

Conread position: 1-327
Cow position: chr6:14852304-14851977 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 145

Conread position: 1-342
Cow position: chr6:15280276-15279942 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 100

Conread position: 1-343
Cow position: chr6:68027065-68027405 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 66

Conread position: 1-354
Cow position: chr6:39437826-39438172 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-355
Cow position: chr6:40867282-40866933 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-357
Cow position: chr6:30274899-30274548 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-359
Cow position: chr6:65821853-65821492 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 156

Conread position: 1-375
Cow position: chr6:52693303-52693675 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-379
Cow position: chr6:38900891-38900517 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 61

Conread position: 1-395
Cow position: chr6:36526328-36526719 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-403
Cow position: chr6:29311771-29312173 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-419
Cow position: chr6:44150283-44149865 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 1-421
Cow position: chr6:15477183-15477608 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 288
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 32, 12

Conread position: 1-421
Cow position: chr6:17046333-17046751 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-422
Cow position: chr6:34892726-34892306 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-422
Cow position: chr6:35876436-35876020 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr6:331193-330771 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 1-423
Cow position: chr6:3889207-3888786 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 152

Conread position: 1-423
Cow position: chr6:8761025-8760605 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 142

Conread position: 1-423
Cow position: chr6:10643826-10644234 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr6:12666040-12665625 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 90

Conread position: 1-423
Cow position: chr6:13104331-13104752 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 108

Conread position: 1-423
Cow position: chr6:13944180-13944602 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 145

Conread position: 1-423
Cow position: chr6:15140904-15140487 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 112

Conread position: 1-423
Cow position: chr6:17598006-17597596 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 73

Conread position: 1-423
Cow position: chr6:20560833-20560412 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr6:28275256-28275675 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 155

Conread position: 1-423
Cow position: chr6:30479382-30479800 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 146

Conread position: 1-423
Cow position: chr6:40275361-40275782 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 14

Conread position: 1-423
Cow position: chr6:44550815-44550398 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 294
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr6:47042919-47042503 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr6:65928243-65928662 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-425
Cow position: chr6:10631331-10631749 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 278
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 34, 74

Conread position: 1-425
Cow position: chr6:65841867-65842279 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 74

Conread position: 2-256
Cow position: chr6:25214535-25214791 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 191
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 31, 149

Conread position: 2-423
Cow position: chr6:27529726-27529310 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 11

Conread position: 2-423
Cow position: chr6:51086220-51086637 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 149

Conread position: 4-343
Cow position: chr6:3277668-3277341 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 51

Conread position: 4-423
Cow position: chr6:5949498-5949079 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 147

Conread position: 4-423
Cow position: chr6:6566889-6567283 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 127

Conread position: 6-238
Cow position: chr6:65881196-65881423 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 22, 0

Conread position: 6-423
Cow position: chr6:11724826-11724412 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 76

Conread position: 6-423
Cow position: chr6:43793428-43793016 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 17

Conread position: 6-423
Cow position: chr6:66232100-66232508 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 141

Conread position: 7-421
Cow position: chr6:7141181-7140769 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 144

Conread position: 8-423
Cow position: chr6:7178989-7178575 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 131

Conread position: 9-423
Cow position: chr6:24239349-24239752 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 10-423
Cow position: chr6:26670585-26670171 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 141

Conread position: 12-283
Cow position: chr6:25794059-25794328 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 90

Conread position: 12-346
Cow position: chr6:64715522-64715848 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 137

Conread position: 12-423
Cow position: chr6:27470888-27471297 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 140

Conread position: 13-339
Cow position: chr6:28063621-28063946 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-359
Cow position: chr6:1411655-1411312 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 135

Conread position: 13-419
Cow position: chr6:39908812-39909218 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 140

Conread position: 13-423
Cow position: chr6:2374986-2375393 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 133

Conread position: 13-423
Cow position: chr6:13847310-13847721 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 141

Conread position: 13-423
Cow position: chr6:16052164-16052574 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 140

Conread position: 13-423
Cow position: chr6:27169866-27170269 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 139

Conread position: 13-423
Cow position: chr6:40251948-40252355 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 136

Conread position: 13-423
Cow position: chr6:43618000-43618410 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 140

Conread position: 13-423
Cow position: chr6:44032077-44032487 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position: chr6:69221925-69221515 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 138

Conread position: 16-423
Cow position: chr6:65914490-65914893 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 49

Conread position: 22-423
Cow position: chr6:185484-185088 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 52

Conread position: 28-237
Cow position: chr6:41656974-41656773 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 28-392
Cow position: chr6:38233145-38233497 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 57

Conread position: 28-423
Cow position: chr6:10499419-10499029 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 28-423
Cow position: chr6:21972963-21973351 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 28-423
Cow position: chr6:24323076-24322686 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 29-423
Cow position: chr6:40315696-40316080 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 62

Conread position: 32-333
Cow position: chr6:40813356-40813061 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 57-283
Cow position: chr6:2887521-2887742 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 89, 0

Conread position: 71-423
Cow position: chr6:58600835-58601176 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 74

Conread position: 81-324
Cow position: chr6:10500658-10500896 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 230, 65

Conread position: 82-341
Cow position: chr6:11274554-11274313 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 82-422
Cow position: chr6:3488058-3487728 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 83-423
Cow position: chr6:186109-185774 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 84-359
Cow position: chr6:6544579-6544843 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 52, 7

Conread position: 89-274
Cow position: chr6:26044916-26045096 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 118, 57

Conread position: 90-423
Cow position: chr6:51714073-51714395 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 8

Conread position: 104-423
Cow position: chr6:6475485-6475173 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 36

Conread position: 160-423
Cow position: chr6:41804292-41804563 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 39

Conread position: 196-423
Cow position: chr6:43999530-43999756 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 266-423
Cow position: chr6:26045376-26045533 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 269-423
Cow position: chr6:25214766-25214918 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 281-423
Cow position: chr6:55542700-55542558 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 104
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.