Cow genome map

Conread name: rtra32_o15.y1

Conread position: 1-193
Cow position: chr9:60651510-60651316 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 150

Conread position: 1-195
Cow position: chr9:25484073-25484269 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 32, 150

Conread position: 1-206
Cow position: chr9:3354478-3354270 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 10, 112

Conread position: 1-237
Cow position: chr9:25023093-25022858 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 20, 148

Conread position: 1-272
Cow position: chr9:49177625-49177354 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-352
Cow position: chr9:13476679-13476326 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 151

Conread position: 1-353
Cow position: chr9:1075995-1075648 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-357
Cow position: chr9:31064635-31064991 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-373
Cow position: chr9:1980194-1980564 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 149

Conread position: 1-376
Cow position: chr9:28688309-28688681 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 152

Conread position: 1-386
Cow position: chr9:60464423-60464049 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 260
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 32, 89

Conread position: 1-406
Cow position: chr9:25035643-25035240 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-419
Cow position: chr9:3803546-3803969 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 145

Conread position: 1-419
Cow position: chr9:44818393-44818793 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 24

Conread position: 1-420
Cow position: chr9:3566643-3566223 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 160

Conread position: 1-421
Cow position: chr9:37971002-37970573 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 150

Conread position: 1-422
Cow position: chr9:1636155-1636570 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 142

Conread position: 1-422
Cow position: chr9:18509594-18509175 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 151

Conread position: 1-422
Cow position: chr9:37162604-37162190 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 74

Conread position: 1-423
Cow position: chr9:4532700-4533121 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr9:6830301-6829886 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 73

Conread position: 1-423
Cow position: chr9:7002991-7003433 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr9:7061885-7061457 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 11

Conread position: 1-423
Cow position: chr9:9013307-9013725 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 101

Conread position: 1-423
Cow position: chr9:10322017-10322427 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 1-423
Cow position: chr9:17064185-17063765 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr9:27034888-27035307 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr9:28022006-28022428 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 95

Conread position: 1-423
Cow position: chr9:28440011-28440432 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 150

Conread position: 1-423
Cow position: chr9:29027992-29027584 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 92

Conread position: 1-423
Cow position: chr9:29628539-29628122 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 118

Conread position: 1-423
Cow position: chr9:30672575-30672990 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr9:42309890-42310310 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr9:42569108-42569529 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 151

Conread position: 1-423
Cow position: chr9:45873549-45873967 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 80

Conread position: 1-423
Cow position: chr9:47002398-47002820 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-423
Cow position: chr9:59173951-59173521 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 160

Conread position: 1-423
Cow position: chr9:59425977-59426393 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position: chr9:59536304-59536721 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 97

Conread position: 1-423
Cow position: chr9:60277813-60277391 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 66

Conread position: 1-423
Cow position: chr9:64119437-64119842 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 92

Conread position: 1-425
Cow position: chr9:16175976-16176398 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 151

Conread position: 2-385
Cow position: chr9:53702515-53702146 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 260
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 34, 147

Conread position: 2-423
Cow position: chr9:5004201-5004599 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 79

Conread position: 4-373
Cow position: chr9:59455055-59454691 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 147

Conread position: 5-268
Cow position: chr9:6050830-6050575 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 29, 12

Conread position: 5-371
Cow position: chr9:31807782-31808143 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 6-423
Cow position: chr9:3543052-3543469 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 148

Conread position: 6-423
Cow position: chr9:51181972-51181561 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 116

Conread position: 10-423
Cow position: chr9:1251779-1251373 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 137

Conread position: 10-423
Cow position: chr9:22653788-22654197 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 140

Conread position: 12-423
Cow position: chr9:43664046-43664427 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 52

Conread position: 13-221
Cow position: chr9:16268586-16268795 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 20, 138

Conread position: 13-230
Cow position: chr9:25755009-25754792 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 20, 138

Conread position: 13-419
Cow position: chr9:51210896-51211303 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 138

Conread position: 13-422
Cow position: chr9:130975-130564 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 141

Conread position: 13-423
Cow position: chr9:222312-221904 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 57

Conread position: 13-423
Cow position: chr9:780590-780181 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position: chr9:3006030-3005623 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position: chr9:28678187-28678594 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position: chr9:30826896-30827301 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 44

Conread position: 13-423
Cow position: chr9:50790928-50791336 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position: chr9:64018247-64017838 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 14-423
Cow position: chr9:36724717-36725125 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 137

Conread position: 28-174
Cow position: chr9:1995674-1995531 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 118, 0

Conread position: 28-421
Cow position: chr9:27934322-27934710 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 28-421
Cow position: chr9:34722150-34722527 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 36

Conread position: 28-425
Cow position: chr9:2171298-2171687 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 88

Conread position: 29-372
Cow position: chr9:4650874-4650538 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 227
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 204, 56

Conread position: 30-357
Cow position: chr9:44795514-44795822 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 51-423
Cow position: chr9:25187365-25187732 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 26

Conread position: 55-423
Cow position: chr9:3998275-3998636 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 29

Conread position: 82-423
Cow position: chr9:32969239-32969575 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 91-364
Cow position: chr9:828824-828574 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 106-417
Cow position: chr9:14762132-14761837 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 40

Conread position: 106-423
Cow position: chr9:4943500-4943187 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 42

Conread position: 225-425
Cow position: chr9:27782647-27782836 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 16, 0

Show alignments to all cow chromosomes.