Cow genome map
Conread name: | rtra32_o15.y1 |
Conread position: | 1-193 |
Cow position: | chr9:60651510-60651316 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 144 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-195 |
Cow position: | chr9:25484073-25484269 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 150 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-206 |
Cow position: | chr9:3354478-3354270 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 152 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 10, 112 |
Conread position: | 1-237 |
Cow position: | chr9:25023093-25022858 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 175 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 20, 148 |
Conread position: | 1-272 |
Cow position: | chr9:49177625-49177354 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-352 |
Cow position: | chr9:13476679-13476326 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 151 |
Conread position: | 1-353 |
Cow position: | chr9:1075995-1075648 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-357 |
Cow position: | chr9:31064635-31064991 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-373 |
Cow position: | chr9:1980194-1980564 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 149 |
Conread position: | 1-376 |
Cow position: | chr9:28688309-28688681 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 152 |
Conread position: | 1-386 |
Cow position: | chr9:60464423-60464049 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 260 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 32, 89 |
Conread position: | 1-406 |
Cow position: | chr9:25035643-25035240 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-419 |
Cow position: | chr9:3803546-3803969 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 145 |
Conread position: | 1-419 |
Cow position: | chr9:44818393-44818793 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 24 |
Conread position: | 1-420 |
Cow position: | chr9:3566643-3566223 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 160 |
Conread position: | 1-421 |
Cow position: | chr9:37971002-37970573 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 150 |
Conread position: | 1-422 |
Cow position: | chr9:1636155-1636570 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 142 |
Conread position: | 1-422 |
Cow position: | chr9:18509594-18509175 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 151 |
Conread position: | 1-422 |
Cow position: | chr9:37162604-37162190 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 74 |
Conread position: | 1-423 |
Cow position: | chr9:4532700-4533121 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr9:6830301-6829886 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 73 |
Conread position: | 1-423 |
Cow position: | chr9:7002991-7003433 (view UCSC Genome Browser custom track) |
Alignm length: | 448 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr9:7061885-7061457 (view UCSC Genome Browser custom track) |
Alignm length: | 439 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 11 |
Conread position: | 1-423 |
Cow position: | chr9:9013307-9013725 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 101 |
Conread position: | 1-423 |
Cow position: | chr9:10322017-10322427 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 1-423 |
Cow position: | chr9:17064185-17063765 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr9:27034888-27035307 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-423 |
Cow position: | chr9:28022006-28022428 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 95 |
Conread position: | 1-423 |
Cow position: | chr9:28440011-28440432 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 150 |
Conread position: | 1-423 |
Cow position: | chr9:29027992-29027584 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 92 |
Conread position: | 1-423 |
Cow position: | chr9:29628539-29628122 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 118 |
Conread position: | 1-423 |
Cow position: | chr9:30672575-30672990 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr9:42309890-42310310 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr9:42569108-42569529 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 151 |
Conread position: | 1-423 |
Cow position: | chr9:45873549-45873967 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 80 |
Conread position: | 1-423 |
Cow position: | chr9:47002398-47002820 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 153 |
Conread position: | 1-423 |
Cow position: | chr9:59173951-59173521 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 160 |
Conread position: | 1-423 |
Cow position: | chr9:59425977-59426393 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 150 |
Conread position: | 1-423 |
Cow position: | chr9:59536304-59536721 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 97 |
Conread position: | 1-423 |
Cow position: | chr9:60277813-60277391 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 66 |
Conread position: | 1-423 |
Cow position: | chr9:64119437-64119842 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 92 |
Conread position: | 1-425 |
Cow position: | chr9:16175976-16176398 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 151 |
Conread position: | 2-385 |
Cow position: | chr9:53702515-53702146 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 260 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 34, 147 |
Conread position: | 2-423 |
Cow position: | chr9:5004201-5004599 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 79 |
Conread position: | 4-373 |
Cow position: | chr9:59455055-59454691 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 147 |
Conread position: | 5-268 |
Cow position: | chr9:6050830-6050575 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 195 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 29, 12 |
Conread position: | 5-371 |
Cow position: | chr9:31807782-31808143 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 0 |
Conread position: | 6-423 |
Cow position: | chr9:3543052-3543469 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 148 |
Conread position: | 6-423 |
Cow position: | chr9:51181972-51181561 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 116 |
Conread position: | 10-423 |
Cow position: | chr9:1251779-1251373 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 137 |
Conread position: | 10-423 |
Cow position: | chr9:22653788-22654197 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 140 |
Conread position: | 12-423 |
Cow position: | chr9:43664046-43664427 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 217, 52 |
Conread position: | 13-221 |
Cow position: | chr9:16268586-16268795 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 160 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 20, 138 |
Conread position: | 13-230 |
Cow position: | chr9:25755009-25754792 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 167 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 20, 138 |
Conread position: | 13-419 |
Cow position: | chr9:51210896-51211303 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 138 |
Conread position: | 13-422 |
Cow position: | chr9:130975-130564 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 141 |
Conread position: | 13-423 |
Cow position: | chr9:222312-221904 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 57 |
Conread position: | 13-423 |
Cow position: | chr9:780590-780181 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 138 |
Conread position: | 13-423 |
Cow position: | chr9:3006030-3005623 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 138 |
Conread position: | 13-423 |
Cow position: | chr9:28678187-28678594 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 138 |
Conread position: | 13-423 |
Cow position: | chr9:30826896-30827301 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 44 |
Conread position: | 13-423 |
Cow position: | chr9:50790928-50791336 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 138 |
Conread position: | 13-423 |
Cow position: | chr9:64018247-64017838 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 138 |
Conread position: | 14-423 |
Cow position: | chr9:36724717-36725125 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 137 |
Conread position: | 28-174 |
Cow position: | chr9:1995674-1995531 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 109 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 118, 0 |
Conread position: | 28-421 |
Cow position: | chr9:27934322-27934710 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 0 |
Conread position: | 28-421 |
Cow position: | chr9:34722150-34722527 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 36 |
Conread position: | 28-425 |
Cow position: | chr9:2171298-2171687 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 370, 88 |
Conread position: | 29-372 |
Cow position: | chr9:4650874-4650538 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 227 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 204, 56 |
Conread position: | 30-357 |
Cow position: | chr9:44795514-44795822 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 51-423 |
Cow position: | chr9:25187365-25187732 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 26 |
Conread position: | 55-423 |
Cow position: | chr9:3998275-3998636 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 29 |
Conread position: | 82-423 |
Cow position: | chr9:32969239-32969575 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 0 |
Conread position: | 91-364 |
Cow position: | chr9:828824-828574 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 186 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 106-417 |
Cow position: | chr9:14762132-14761837 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 153, 40 |
Conread position: | 106-423 |
Cow position: | chr9:4943500-4943187 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 246, 42 |
Conread position: | 225-425 |
Cow position: | chr9:27782647-27782836 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 147 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.