Cow genome map

Conread name: rtra32_o15.y1

Conread position: 1-135
Cow position:
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 1-173
Cow position:
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 150

Conread position: 1-176
Cow position:
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 150

Conread position: 1-177
Cow position:
Alignm length: 182
Alignm identity: 132
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 34, 150

Conread position: 1-216
Cow position:
Alignm length: 221
Alignm identity: 166
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 32, 150

Conread position: 1-224
Cow position:
Alignm length: 231
Alignm identity: 172
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 32, 150

Conread position: 1-264
Cow position:
Alignm length: 271
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 66

Conread position: 1-313
Cow position:
Alignm length: 318
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 127

Conread position: 1-327
Cow position:
Alignm length: 332
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-327
Cow position:
Alignm length: 337
Alignm identity: 231
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 31, 81

Conread position: 1-341
Cow position:
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-343
Cow position:
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-352
Cow position:
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-357
Cow position:
Alignm length: 362
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 132

Conread position: 1-358
Cow position:
Alignm length: 363
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-373
Cow position:
Alignm length: 378
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-379
Cow position:
Alignm length: 385
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 151

Conread position: 1-380
Cow position:
Alignm length: 385
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 123

Conread position: 1-414
Cow position:
Alignm length: 419
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 76

Conread position: 1-419
Cow position:
Alignm length: 424
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-419
Cow position:
Alignm length: 427
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 148

Conread position: 1-422
Cow position:
Alignm length: 427
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 1-422
Cow position:
Alignm length: 422
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 1-422
Cow position:
Alignm length: 427
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-422
Cow position:
Alignm length: 427
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 106

Conread position: 1-422
Cow position:
Alignm length: 427
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 71

Conread position: 1-422
Cow position:
Alignm length: 427
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 150

Conread position: 1-422
Cow position:
Alignm length: 427
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 107

Conread position: 1-423
Cow position:
Alignm length: 429
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 151

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 433
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 429
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 151

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 423
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 430
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 96

Conread position: 1-423
Cow position:
Alignm length: 429
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 429
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 150

Conread position: 1-423
Cow position:
Alignm length: 430
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 423
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 1-423
Cow position:
Alignm length: 429
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 154

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 73

Conread position: 1-423
Cow position:
Alignm length: 436
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 12

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 150

Conread position: 1-423
Cow position:
Alignm length: 429
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 99

Conread position: 1-423
Cow position:
Alignm length: 424
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 34

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 153

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 151

Conread position: 1-423
Cow position:
Alignm length: 429
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 156

Conread position: 1-423
Cow position:
Alignm length: 430
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 1-423
Cow position:
Alignm length: 430
Alignm identity: 286
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 151

Conread position: 1-423
Cow position:
Alignm length: 428
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 423
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 1-423
Cow position:
Alignm length: 435
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 18

Conread position: 1-423
Cow position:
Alignm length: 431
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 1-423
Cow position:
Alignm length: 429
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 3-423
Cow position:
Alignm length: 427
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 150

Conread position: 4-422
Cow position:
Alignm length: 424
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 147

Conread position: 4-423
Cow position:
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 147

Conread position: 5-417
Cow position:
Alignm length: 424
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 57

Conread position: 5-422
Cow position:
Alignm length: 423
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 91

Conread position: 6-243
Cow position:
Alignm length: 243
Alignm identity: 179
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 27, 137

Conread position: 6-423
Cow position:
Alignm length: 419
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 141

Conread position: 7-425
Cow position:
Alignm length: 426
Alignm identity: 269
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 94

Conread position: 8-341
Cow position:
Alignm length: 334
Alignm identity: 207
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 21, 0

Conread position: 8-379
Cow position:
Alignm length: 376
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 139

Conread position: 10-352
Cow position:
Alignm length: 344
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 86

Conread position: 10-360
Cow position:
Alignm length: 356
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 139

Conread position: 10-422
Cow position:
Alignm length: 418
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 141

Conread position: 10-423
Cow position:
Alignm length: 415
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 137

Conread position: 10-423
Cow position:
Alignm length: 419
Alignm identity: 284
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 26, 63

Conread position: 10-423
Cow position:
Alignm length: 419
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 141

Conread position: 10-423
Cow position:
Alignm length: 415
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 137

Conread position: 12-227
Cow position:
Alignm length: 221
Alignm identity: 168
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 21, 138

Conread position: 12-423
Cow position:
Alignm length: 417
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 142

Conread position: 12-423
Cow position:
Alignm length: 417
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 114

Conread position: 13-261
Cow position:
Alignm length: 254
Alignm identity: 152
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 20, 138

Conread position: 13-274
Cow position:
Alignm length: 267
Alignm identity: 201
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 20, 133

Conread position: 13-319
Cow position:
Alignm length: 320
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 138

Conread position: 13-421
Cow position:
Alignm length: 416
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 142

Conread position: 13-422
Cow position:
Alignm length: 415
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-422
Cow position:
Alignm length: 420
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 145

Conread position: 13-423
Cow position:
Alignm length: 411
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 13-423
Cow position:
Alignm length: 418
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 138

Conread position: 13-423
Cow position:
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position:
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 138

Conread position: 13-423
Cow position:
Alignm length: 425
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 147

Conread position: 13-423
Cow position:
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position:
Alignm length: 416
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 64

Conread position: 13-423
Cow position:
Alignm length: 416
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 64

Conread position: 13-423
Cow position:
Alignm length: 418
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position:
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 138

Conread position: 13-423
Cow position:
Alignm length: 416
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 54

Conread position: 13-423
Cow position:
Alignm length: 418
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 141

Conread position: 13-423
Cow position:
Alignm length: 425
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 140

Conread position: 13-423
Cow position:
Alignm length: 416
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 13-423
Cow position:
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 138

Conread position: 13-423
Cow position:
Alignm length: 417
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 84

Conread position: 13-423
Cow position:
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 140

Conread position: 13-423
Cow position:
Alignm length: 416
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 140

Conread position: 14-422
Cow position:
Alignm length: 414
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 137

Conread position: 16-423
Cow position:
Alignm length: 426
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 128

Conread position: 18-420
Cow position:
Alignm length: 408
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 136

Conread position: 19-423
Cow position:
Alignm length: 405
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 23-230
Cow position:
Alignm length: 212
Alignm identity: 149
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 11, 108

Conread position: 27-340
Cow position:
Alignm length: 315
Alignm identity: 202
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 118, 163

Conread position: 28-225
Cow position:
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 69, 117

Conread position: 28-313
Cow position:
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 28-391
Cow position:
Alignm length: 369
Alignm identity: 258
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 69, 36

Conread position: 28-419
Cow position:
Alignm length: 392
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 28-422
Cow position:
Alignm length: 401
Alignm identity: 258
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 27, 18

Conread position: 28-423
Cow position:
Alignm length: 397
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 118

Conread position: 29-267
Cow position:
Alignm length: 239
Alignm identity: 176
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 117, 0

Conread position: 30-423
Cow position:
Alignm length: 394
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 32-419
Cow position:
Alignm length: 389
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 114

Conread position: 33-423
Cow position:
Alignm length: 391
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 36-423
Cow position:
Alignm length: 399
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 59

Conread position: 43-422
Cow position:
Alignm length: 381
Alignm identity: 246
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 359, 43

Conread position: 45-313
Cow position:
Alignm length: 270
Alignm identity: 187
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 136, 12

Conread position: 54-420
Cow position:
Alignm length: 369
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 67

Conread position: 81-423
Cow position:
Alignm length: 343
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 82-423
Cow position:
Alignm length: 342
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 95-423
Cow position:
Alignm length: 329
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 106-327
Cow position:
Alignm length: 226
Alignm identity: 172
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 88, 38

Conread position: 106-423
Cow position:
Alignm length: 318
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 106-423
Cow position:
Alignm length: 318
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 113-422
Cow position:
Alignm length: 313
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 39

Conread position: 118-423
Cow position:
Alignm length: 306
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 124-425
Cow position:
Alignm length: 305
Alignm identity: 218
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 85, 24

Conread position: 152-423
Cow position:
Alignm length: 273
Alignm identity: 185
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 63, 17

Conread position: 155-423
Cow position:
Alignm length: 269
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 184-423
Cow position:
Alignm length: 240
Alignm identity: 176
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 57, 0

Conread position: 214-423
Cow position:
Alignm length: 210
Alignm identity: 160
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 27, 0

Conread position: 220-417
Cow position:
Alignm length: 199
Alignm identity: 152
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 184, 21

Conread position: 291-423
Cow position:
Alignm length: 133
Alignm identity: 100
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 44, 0

Show alignments to all cow chromosomes.