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Cow genome map

           
Conread name:
           
ruio02_f11.y1
        

               
Conread position:
               
1-190
               

               
Cow position:
               
chr11:46474009-46473813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr11:68750966-68750763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 36
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr11:71846666-71846451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr11:8339722-8339510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
117, 39
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr11:38235920-38236139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr11:23138389-23138157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr11:34412782-34413000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr11:55347948-55348168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr11:9837418-9837192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr11:43913905-43914121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
119, 39
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr11:27248175-27248403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:35881589-35881828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
120, 50
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr11:58614336-58614596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr11:41577322-41577020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr11:3797092-3797383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
120, 45
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr11:85189717-85189397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 275
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr11:73478306-73478620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
120, 39
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr11:10076457-10076803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 30
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr11:30120980-30120595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr11:61427297-61427680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 35
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr11:36986645-36987041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr11:42083166-42083562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr11:5032094-5031681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr11:58588026-58588439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr11:73512737-73512349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 41
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr11:76606372-76606767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr11:8841060-8840658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr11:17278978-17278578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr11:20601922-20602324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 41
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr11:42358807-42359217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr11:62376754-62376376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 34
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr11:43897818-43898248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 40
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr11:7460897-7460501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 21
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr11:37974608-37975046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
116, 30
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr11:67746960-67747394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr11:18086655-18086229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr11:63847534-63847963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 29
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr11:69118982-69119407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 28
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr11:73924876-73924446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr11:54334015-54334450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 40
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr11:33413916-33414375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr11:34112946-34113406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 122
               

               
Conread position:
               
1-452
               

               
Cow position:
               
chr11:10302524-10302053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 168
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chr11:68207165-68206697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr11:3393527-3393063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 30
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr11:30879360-30879823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr11:31413133-31413613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
116, 30
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr11:51755998-51756453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr11:80923653-80923170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr11:5328478-5328941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 39
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr11:17890040-17889571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr11:25745005-25745464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr11:30708175-30708661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr11:33001682-33002123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
269, 30
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr11:40793018-40792537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr11:65495645-65495188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr11:77705447-77705906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:1486186-1485703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 40
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:1625536-1625065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 40
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:4732021-4732501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:8495720-8496190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 40
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:17321344-17321822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 41
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:25792010-25791536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 30
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:32198623-32199100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:40467441-40466966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:55744156-55744626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:58990193-58990668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 45
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:60302275-60301820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 39
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:64029573-64029110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:68910170-68909696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:75480352-75479865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 34
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:77751083-77750604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:86926239-86925806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
2-452
               

               
Cow position:
               
chr11:8525422-8524970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
120, 29
               

               
Conread position:
               
2-460
               

               
Cow position:
               
chr11:32595150-32595615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
2-460
               

               
Cow position:
               
chr11:59463952-59463485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
2-461
               

               
Cow position:
               
chr11:7873845-7874297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr11:61137513-61137297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
120, 23
               

               
Conread position:
               
3-457
               

               
Cow position:
               
chr11:64334542-64334986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 28
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr11:41599041-41598823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
115, 26
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr11:48271882-48272101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
115, 32
               

               
Conread position:
               
5-231
               

               
Cow position:
               
chr11:61454848-61454619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
115, 35
               

               
Conread position:
               
5-284
               

               
Cow position:
               
chr11:55117160-55117446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr11:37068617-37068303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr11:18389174-18388853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
115, 36
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr11:83196188-83196517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr11:81174577-81174910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 26
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr11:50236282-50235891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
5-396
               

               
Cow position:
               
chr11:41809790-41809399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 24
               

               
Conread position:
               
5-397
               

               
Cow position:
               
chr11:17831546-17831127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 13
               

               
Conread position:
               
5-397
               

               
Cow position:
               
chr11:21852597-21852207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
112, 26
               

               
Conread position:
               
5-418
               

               
Cow position:
               
chr11:41812225-41811799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 26
               

               
Conread position:
               
5-419
               

               
Cow position:
               
chr11:25386757-25387186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
168, 26
               

               
Conread position:
               
5-421
               

               
Cow position:
               
chr11:28643768-28644206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 26
               

               
Conread position:
               
5-421
               

               
Cow position:
               
chr11:48649641-48650091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
5-440
               

               
Cow position:
               
chr11:37278512-37278087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
5-440
               

               
Cow position:
               
chr11:59872613-59873059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 35
               

               
Conread position:
               
5-452
               

               
Cow position:
               
chr11:30191850-30192329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 42
               

               
Conread position:
               
5-455
               

               
Cow position:
               
chr11:13499701-13500165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
5-458
               

               
Cow position:
               
chr11:50153131-50152659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 29
               

               
Conread position:
               
5-461
               

               
Cow position:
               
chr11:5075524-5075073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 33
               

               
Conread position:
               
5-461
               

               
Cow position:
               
chr11:6594561-6594072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 37
               

               
Conread position:
               
5-461
               

               
Cow position:
               
chr11:10095029-10095500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
5-461
               

               
Cow position:
               
chr11:34615955-34616418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 35
               

               
Conread position:
               
5-461
               

               
Cow position:
               
chr11:43524309-43524767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 35
               

               
Conread position:
               
5-461
               

               
Cow position:
               
chr11:49211146-49210660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 32
               

               
Conread position:
               
5-461
               

               
Cow position:
               
chr11:61202840-61203323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 293
               

               
Conread position:
               
5-461
               

               
Cow position:
               
chr11:67345958-67345502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
6-327
               

               
Cow position:
               
chr11:17112939-17112608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
6-367
               

               
Cow position:
               
chr11:18588892-18588521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 34
               

               
Conread position:
               
6-453
               

               
Cow position:
               
chr11:40458808-40459259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
6-461
               

               
Cow position:
               
chr11:18509321-18508872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 28
               

               
Conread position:
               
7-223
               

               
Cow position:
               
chr11:37118173-37118390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
7-312
               

               
Cow position:
               
chr11:4412331-4412012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
7-385
               

               
Cow position:
               
chr11:3833659-3833280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 35
               

               
Conread position:
               
7-460
               

               
Cow position:
               
chr11:66733524-66733988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
7-461
               

               
Cow position:
               
chr11:17860465-17859996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
7-461
               

               
Cow position:
               
chr11:41986355-41985891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 35
               

               
Conread position:
               
7-461
               

               
Cow position:
               
chr11:70484173-70483694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
7-461
               

               
Cow position:
               
chr11:77745575-77745092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 143
               

               
Conread position:
               
8-461
               

               
Cow position:
               
chr11:53778302-53778777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 23
               

               
Conread position:
               
9-339
               

               
Cow position:
               
chr11:27386649-27386302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 22
               

               
Conread position:
               
9-401
               

               
Cow position:
               
chr11:26483410-26483804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 31
               

               
Conread position:
               
11-259
               

               
Cow position:
               
chr11:36496541-36496780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
11-420
               

               
Cow position:
               
chr11:1071401-1070973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 30
               

               
Conread position:
               
12-416
               

               
Cow position:
               
chr11:7589874-7590302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 275
               

               
Conread position:
               
12-452
               

               
Cow position:
               
chr11:71868910-71868455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 19
               

               
Conread position:
               
13-218
               

               
Cow position:
               
chr11:25319745-25319949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
107, 29
               

               
Conread position:
               
16-461
               

               
Cow position:
               
chr11:18698570-18699027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 25
               

               
Conread position:
               
18-461
               

               
Cow position:
               
chr11:26535474-26535941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 20
               

               
Conread position:
               
24-439
               

               
Cow position:
               
chr11:18244242-18243810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 237
               

               
Conread position:
               
32-461
               

               
Cow position:
               
chr11:6400363-6399907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 19
               

               
Conread position:
               
38-461
               

               
Cow position:
               
chr11:35348043-35347594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 6
               

               
Conread position:
               
40-460
               

               
Cow position:
               
chr11:19487760-19487323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 108
               

               
Conread position:
               
41-461
               

               
Cow position:
               
chr11:13043420-13042991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 25
               

               
Conread position:
               
44-223
               

               
Cow position:
               
chr11:48901358-48901180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
77, 153
               

               
Conread position:
               
45-425
               

               
Cow position:
               
chr11:10388876-10388503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 123
               

               
Conread position:
               
45-441
               

               
Cow position:
               
chr11:81137942-81138349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
45-461
               

               
Cow position:
               
chr11:58103054-58102601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 155
               

               
Conread position:
               
46-217
               

               
Cow position:
               
chr11:84891030-84890855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
46-218
               

               
Cow position:
               
chr11:6620570-6620389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
46-231
               

               
Cow position:
               
chr11:65409436-65409247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
76, 160
               

               
Conread position:
               
46-236
               

               
Cow position:
               
chr11:2788101-2788295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
71, 182
               

               
Conread position:
               
46-362
               

               
Cow position:
               
chr11:71168856-71168530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 215
               

               
Conread position:
               
46-371
               

               
Cow position:
               
chr11:70273023-70273375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
46-387
               

               
Cow position:
               
chr11:56654270-56654640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
46-395
               

               
Cow position:
               
chr11:53552978-53553310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
46-405
               

               
Cow position:
               
chr11:81931350-81931014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 51
               

               
Conread position:
               
46-418
               

               
Cow position:
               
chr11:70745814-70745419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
46-421
               

               
Cow position:
               
chr11:951990-952386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
74, 153
               

               
Conread position:
               
46-430
               

               
Cow position:
               
chr11:3769568-3769185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 142
               

               
Conread position:
               
46-452
               

               
Cow position:
               
chr11:8988508-8988088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 231
               

               
Conread position:
               
46-453
               

               
Cow position:
               
chr11:4436054-4436483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 115
               

               
Conread position:
               
46-454
               

               
Cow position:
               
chr11:63065375-63065803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 215
               

               
Conread position:
               
46-457
               

               
Cow position:
               
chr11:65827010-65826598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 91
               

               
Conread position:
               
46-458
               

               
Cow position:
               
chr11:21894432-21893995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 181
               

               
Conread position:
               
46-459
               

               
Cow position:
               
chr11:52464164-52464560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
46-459
               

               
Cow position:
               
chr11:87155234-87155676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
46-460
               

               
Cow position:
               
chr11:47755643-47755224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
46-460
               

               
Cow position:
               
chr11:52297502-52297067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 253
               

               
Conread position:
               
46-460
               

               
Cow position:
               
chr11:59902612-59903048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
46-460
               

               
Cow position:
               
chr11:85723423-85723850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 112
               

               
Conread position:
               
46-461
               

               
Cow position:
               
chr11:3719973-3720412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 300
               

               
Conread position:
               
46-461
               

               
Cow position:
               
chr11:6234157-6233721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
46-461
               

               
Cow position:
               
chr11:7315405-7314992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 181
               

               
Conread position:
               
46-461
               

               
Cow position:
               
chr11:13190941-13191393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
30, 40
               

               
Conread position:
               
46-461
               

               
Cow position:
               
chr11:14649591-14649154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 204
               

               
Conread position:
               
46-461
               

               
Cow position:
               
chr11:35579975-35580418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
71, 225
               

               
Conread position:
               
46-461
               

               
Cow position:
               
chr11:36182410-36182848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 120
               

               
Conread position:
               
46-461
               

               
Cow position:
               
chr11:46748147-46747702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 208
               

               
Conread position:
               
46-461
               

               
Cow position:
               
chr11:50111913-50112338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 117
               

               
Conread position:
               
46-461
               

               
Cow position:
               
chr11:70303808-70304232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
47-224
               

               
Cow position:
               
chr11:38193874-38194056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
73, 159
               

               
Conread position:
               
47-224
               

               
Cow position:
               
chr11:77241103-77241272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 33
               

               
Conread position:
               
47-297
               

               
Cow position:
               
chr11:81614909-81614645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
126, 29
               

               
Conread position:
               
47-301
               

               
Cow position:
               
chr11:30110694-30110961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
47-323
               

               
Cow position:
               
chr11:25165168-25165446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
47-362
               

               
Cow position:
               
chr11:42003231-42002888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
47-384
               

               
Cow position:
               
chr11:43430724-43430375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 73
               

               
Conread position:
               
47-390
               

               
Cow position:
               
chr11:40258675-40258322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
47-394
               

               
Cow position:
               
chr11:33526799-33527144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 41
               

               
Conread position:
               
47-397
               

               
Cow position:
               
chr11:1362758-1362373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
47-400
               

               
Cow position:
               
chr11:18572526-18572898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 114
               

               
Conread position:
               
47-400
               

               
Cow position:
               
chr11:76114377-76114740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 81
               

               
Conread position:
               
47-400
               

               
Cow position:
               
chr11:80761657-80761280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
79, 75
               

               
Conread position:
               
47-419
               

               
Cow position:
               
chr11:3282781-3283142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 44
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr11:70609510-70609917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
75, 107
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr11:80530093-80530473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 89
               

               
Conread position:
               
47-436
               

               
Cow position:
               
chr11:6835250-6835667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 294
               

               
Conread position:
               
47-440
               

               
Cow position:
               
chr11:42836240-42835813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
47-442
               

               
Cow position:
               
chr11:51688003-51687589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 150
               

               
Conread position:
               
47-449
               

               
Cow position:
               
chr11:24601689-24602105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 158
               

               
Conread position:
               
47-457
               

               
Cow position:
               
chr11:11125385-11125821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 364
               

               
Conread position:
               
47-457
               

               
Cow position:
               
chr11:21549218-21549635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 102
               

               
Conread position:
               
47-457
               

               
Cow position:
               
chr11:45646868-45646440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
74, 33
               

               
Conread position:
               
47-460
               

               
Cow position:
               
chr11:21844410-21843983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
47-461
               

               
Cow position:
               
chr11:9222003-9221565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 268
               

               
Conread position:
               
47-461
               

               
Cow position:
               
chr11:18484437-18484044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 109
               

               
Conread position:
               
47-461
               

               
Cow position:
               
chr11:30720820-30721257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 379
               

               
Conread position:
               
47-461
               

               
Cow position:
               
chr11:42016916-42016481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 266
               

               
Conread position:
               
47-461
               

               
Cow position:
               
chr11:46746358-46746793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
47-461
               

               
Cow position:
               
chr11:48474431-48474866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 65
               

               
Conread position:
               
47-461
               

               
Cow position:
               
chr11:55761602-55762014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 29
               

               
Conread position:
               
47-461
               

               
Cow position:
               
chr11:73354333-73353910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 151
               

               
Conread position:
               
47-461
               

               
Cow position:
               
chr11:80564027-80564454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 347
               

               
Conread position:
               
47-461
               

               
Cow position:
               
chr11:83043638-83043210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 101
               

               
Conread position:
               
48-218
               

               
Cow position:
               
chr11:53719669-53719839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
48-344
               

               
Cow position:
               
chr11:48697171-48697486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
72, 196
               

               
Conread position:
               
48-393
               

               
Cow position:
               
chr11:35874257-35873912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
48-459
               

               
Cow position:
               
chr11:1380418-1380832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 84
               

               
Conread position:
               
50-391
               

               
Cow position:
               
chr11:64638798-64638437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 285
               

               
Conread position:
               
51-217
               

               
Cow position:
               
chr11:8105509-8105677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
72, 145
               

               
Conread position:
               
51-224
               

               
Cow position:
               
chr11:27462658-27462488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
71, 106
               

               
Conread position:
               
51-224
               

               
Cow position:
               
chr11:48232469-48232635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 82
               

               
Conread position:
               
51-225
               

               
Cow position:
               
chr11:6639238-6639413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
51-229
               

               
Cow position:
               
chr11:45632038-45631856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
69, 148
               

               
Conread position:
               
51-244
               

               
Cow position:
               
chr11:11752792-11752597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
51-335
               

               
Cow position:
               
chr11:18210622-18210315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
70, 148
               

               
Conread position:
               
51-343
               

               
Cow position:
               
chr11:22932235-22931930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
125, 31
               

               
Conread position:
               
51-363
               

               
Cow position:
               
chr11:44818823-44819154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
51-390
               

               
Cow position:
               
chr11:34830053-34829698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 288
               

               
Conread position:
               
51-397
               

               
Cow position:
               
chr11:41271864-41272232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 149
               

               
Conread position:
               
51-397
               

               
Cow position:
               
chr11:62155357-62155733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 29
               

               
Conread position:
               
51-403
               

               
Cow position:
               
chr11:30354794-30355159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
51-419
               

               
Cow position:
               
chr11:23232787-23232405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 114
               

               
Conread position:
               
51-421
               

               
Cow position:
               
chr11:20761572-20761961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
51-427
               

               
Cow position:
               
chr11:30475726-30476119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
51-438
               

               
Cow position:
               
chr11:7924862-7924458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
51-450
               

               
Cow position:
               
chr11:13040433-13040036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
68, 25
               

               
Conread position:
               
51-458
               

               
Cow position:
               
chr11:10992006-10992416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 149
               

               
Conread position:
               
51-460
               

               
Cow position:
               
chr11:81300886-81300465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 181
               

               
Conread position:
               
51-461
               

               
Cow position:
               
chr11:17227913-17227494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
51-461
               

               
Cow position:
               
chr11:48932856-48932432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
51-461
               

               
Cow position:
               
chr11:53773399-53773840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
51-461
               

               
Cow position:
               
chr11:63518741-63519151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 99
               

               
Conread position:
               
52-212
               

               
Cow position:
               
chr11:5790188-5790023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
52-415
               

               
Cow position:
               
chr11:83230657-83230288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
52-456
               

               
Cow position:
               
chr11:49935015-49934591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
24, 150
               

               
Conread position:
               
52-461
               

               
Cow position:
               
chr11:6580541-6580991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
53-224
               

               
Cow position:
               
chr11:71455516-71455695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-236
               

               
Cow position:
               
chr11:81143830-81143637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 152
               

               
Conread position:
               
53-287
               

               
Cow position:
               
chr11:75748164-75748419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
53-418
               

               
Cow position:
               
chr11:377922-377527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 377
               

               
Conread position:
               
53-459
               

               
Cow position:
               
chr11:49148778-49149201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 23
               

               
Conread position:
               
53-460
               

               
Cow position:
               
chr11:34467326-34467718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 104
               

               
Conread position:
               
53-460
               

               
Cow position:
               
chr11:62663504-62663086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 90
               

               
Conread position:
               
53-461
               

               
Cow position:
               
chr11:52381142-52380715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 121
               

               
Conread position:
               
53-461
               

               
Cow position:
               
chr11:66041002-66041429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 113
               

               
Conread position:
               
54-367
               

               
Cow position:
               
chr11:80788181-80787842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
54-389
               

               
Cow position:
               
chr11:7415116-7414789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
54-453
               

               
Cow position:
               
chr11:41549599-41549184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 10
               

               
Conread position:
               
54-461
               

               
Cow position:
               
chr11:259449-259019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
82, 67
               

               
Conread position:
               
54-461
               

               
Cow position:
               
chr11:19247466-19247048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 283
               

               
Conread position:
               
55-323
               

               
Cow position:
               
chr11:38810620-38810328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
65, 226
               

               
Conread position:
               
55-409
               

               
Cow position:
               
chr11:45898325-45897940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
55-458
               

               
Cow position:
               
chr11:55333639-55334073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 221
               

               
Conread position:
               
56-223
               

               
Cow position:
               
chr11:24584911-24585079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 110
               

               
Conread position:
               
56-397
               

               
Cow position:
               
chr11:34032464-34032104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
56-450
               

               
Cow position:
               
chr11:55052604-55053013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 156
               

               
Conread position:
               
57-397
               

               
Cow position:
               
chr11:47125298-47125638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 111
               

               
Conread position:
               
58-224
               

               
Cow position:
               
chr11:30596730-30596889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
58-371
               

               
Cow position:
               
chr11:41176170-41175880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
204, 60
               

               
Conread position:
               
59-224
               

               
Cow position:
               
chr11:15608558-15608389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
59-302
               

               
Cow position:
               
chr11:62045133-62045396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
61, 102
               

               
Conread position:
               
59-404
               

               
Cow position:
               
chr11:1157405-1157747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
136, 44
               

               
Conread position:
               
59-454
               

               
Cow position:
               
chr11:77759025-77758611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
60-256
               

               
Cow position:
               
chr11:17192546-17192348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
61, 137
               

               
Conread position:
               
60-386
               

               
Cow position:
               
chr11:47544863-47545215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
60, 288
               

               
Conread position:
               
60-398
               

               
Cow position:
               
chr11:63482690-63482334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 277
               

               
Conread position:
               
60-400
               

               
Cow position:
               
chr11:36659079-36658726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 273
               

               
Conread position:
               
60-419
               

               
Cow position:
               
chr11:33754164-33753795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
61, 86
               

               
Conread position:
               
60-451
               

               
Cow position:
               
chr11:34120929-34121345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
21, 143
               

               
Conread position:
               
60-460
               

               
Cow position:
               
chr11:27746653-27747074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
27, 145
               

               
Conread position:
               
61-397
               

               
Cow position:
               
chr11:22499614-22499272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
62-313
               

               
Cow position:
               
chr11:59673099-59672829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 139
               

               
Conread position:
               
62-457
               

               
Cow position:
               
chr11:31227732-31228110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 81
               

               
Conread position:
               
62-460
               

               
Cow position:
               
chr11:30764217-30764648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
63-461
               

               
Cow position:
               
chr11:83397643-83398064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
64-241
               

               
Cow position:
               
chr11:10876977-10877157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 135
               

               
Conread position:
               
64-459
               

               
Cow position:
               
chr11:2917837-2917438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
64-460
               

               
Cow position:
               
chr11:78381307-78380913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 82
               

               
Conread position:
               
65-231
               

               
Cow position:
               
chr11:63516563-63516734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 135
               

               
Conread position:
               
66-390
               

               
Cow position:
               
chr11:36647102-36647431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 135
               

               
Conread position:
               
66-418
               

               
Cow position:
               
chr11:3233821-3234189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 168
               

               
Conread position:
               
67-397
               

               
Cow position:
               
chr11:77128411-77128755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
67-461
               

               
Cow position:
               
chr11:45872576-45872153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 243
               

               
Conread position:
               
68-397
               

               
Cow position:
               
chr11:33310714-33311072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
69-457
               

               
Cow position:
               
chr11:2907781-2907378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
37, 134
               

               
Conread position:
               
70-453
               

               
Cow position:
               
chr11:66188576-66188170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 340
               

               
Conread position:
               
71-461
               

               
Cow position:
               
chr11:38071111-38071501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
102, 20
               

               
Conread position:
               
71-461
               

               
Cow position:
               
chr11:48544190-48544593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
72-450
               

               
Cow position:
               
chr11:72870673-72871047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 8
               

               
Conread position:
               
72-461
               

               
Cow position:
               
chr11:3726033-3726444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
48, 195
               

               
Conread position:
               
73-460
               

               
Cow position:
               
chr11:77319172-77319568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
48, 85
               

               
Conread position:
               
73-461
               

               
Cow position:
               
chr11:5416649-5417043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
73-461
               

               
Cow position:
               
chr11:20238421-20238833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
74-234
               

               
Cow position:
               
chr11:21819695-21819534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
47, 123
               

               
Conread position:
               
74-421
               

               
Cow position:
               
chr11:2832921-2832569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
46, 114
               

               
Conread position:
               
74-450
               

               
Cow position:
               
chr11:36112166-36112564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 208
               

               
Conread position:
               
76-224
               

               
Cow position:
               
chr11:81042313-81042460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
44, 26
               

               
Conread position:
               
76-461
               

               
Cow position:
               
chr11:2083899-2084302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
77-461
               

               
Cow position:
               
chr11:30639196-30638795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 201
               

               
Conread position:
               
77-461
               

               
Cow position:
               
chr11:42885018-42884628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
44, 71
               

               
Conread position:
               
79-390
               

               
Cow position:
               
chr11:47899031-47899356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 120
               

               
Conread position:
               
81-224
               

               
Cow position:
               
chr11:41438468-41438318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
81-244
               

               
Cow position:
               
chr11:62808892-62808728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
81-415
               

               
Cow position:
               
chr11:30924909-30925267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 66
               

               
Conread position:
               
81-421
               

               
Cow position:
               
chr11:50072718-50073056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
81-452
               

               
Cow position:
               
chr11:26117960-26117586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
39, 227
               

               
Conread position:
               
82-457
               

               
Cow position:
               
chr11:57725071-57724670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 197
               

               
Conread position:
               
83-456
               

               
Cow position:
               
chr11:26144326-26143942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 193
               

               
Conread position:
               
85-460
               

               
Cow position:
               
chr11:62239510-62239897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
129, 52
               

               
Conread position:
               
86-460
               

               
Cow position:
               
chr11:27405307-27404915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
35, 255
               

               
Conread position:
               
89-459
               

               
Cow position:
               
chr11:10687123-10686732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
32, 262
               

               
Conread position:
               
90-341
               

               
Cow position:
               
chr11:14094659-14094381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
90-370
               

               
Cow position:
               
chr11:18341273-18340973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 232
               

               
Conread position:
               
90-450
               

               
Cow position:
               
chr11:4663273-4662908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
90-457
               

               
Cow position:
               
chr11:11469868-11469500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
90-461
               

               
Cow position:
               
chr11:62620150-62620533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 329
               

               
Conread position:
               
91-460
               

               
Cow position:
               
chr11:25620629-25620234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
92-218
               

               
Cow position:
               
chr11:32436096-32436229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
92-397
               

               
Cow position:
               
chr11:42044223-42043902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
92-461
               

               
Cow position:
               
chr11:31417203-31417580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 30
               

               
Conread position:
               
93-458
               

               
Cow position:
               
chr11:70422801-70422440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 64
               

               
Conread position:
               
93-461
               

               
Cow position:
               
chr11:21728499-21728131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
25, 102
               

               
Conread position:
               
95-377
               

               
Cow position:
               
chr11:2509525-2509231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
97-461
               

               
Cow position:
               
chr11:5433040-5433423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
24, 335
               

               
Conread position:
               
98-460
               

               
Cow position:
               
chr11:29960078-29960449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
101-353
               

               
Cow position:
               
chr11:2811947-2811679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
103-461
               

               
Cow position:
               
chr11:34145138-34144762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
18, 233
               

               
Conread position:
               
103-461
               

               
Cow position:
               
chr11:81406379-81406010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 173
               

               
Conread position:
               
105-436
               

               
Cow position:
               
chr11:23586416-23586773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 302
               

               
Conread position:
               
105-461
               

               
Cow position:
               
chr11:39462398-39462776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 330
               

               
Conread position:
               
106-360
               

               
Cow position:
               
chr11:61859118-61858845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
108-459
               

               
Cow position:
               
chr11:69015777-69016132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
99, 52
               

               
Conread position:
               
108-460
               

               
Cow position:
               
chr11:65607904-65607538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 18
               

               
Conread position:
               
110-461
               

               
Cow position:
               
chr11:18656022-18656379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
111-461
               

               
Cow position:
               
chr11:20562189-20561836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
22, 112
               

               
Conread position:
               
116-457
               

               
Cow position:
               
chr11:37425321-37425002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
8, 45
               

               
Conread position:
               
118-224
               

               
Cow position:
               
chr11:27910887-27910995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
118-458
               

               
Cow position:
               
chr11:27913069-27913440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 109
               

               
Conread position:
               
119-386
               

               
Cow position:
               
chr11:38874607-38874320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 270
               

               
Conread position:
               
119-388
               

               
Cow position:
               
chr11:52983486-52983761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 146
               

               
Conread position:
               
119-421
               

               
Cow position:
               
chr11:36238580-36238897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
54, 152
               

               
Conread position:
               
121-421
               

               
Cow position:
               
chr11:61958952-61958626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
26, 138
               

               
Conread position:
               
124-413
               

               
Cow position:
               
chr11:71341648-71341356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
124-460
               

               
Cow position:
               
chr11:7458485-7458124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
125-397
               

               
Cow position:
               
chr11:12804487-12804202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
125-461
               

               
Cow position:
               
chr11:34646395-34646752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
127-461
               

               
Cow position:
               
chr11:3920501-3920146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
49, 234
               

               
Conread position:
               
127-461
               

               
Cow position:
               
chr11:13592541-13592896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 144
               

               
Conread position:
               
129-341
               

               
Cow position:
               
chr11:48042233-48041994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
129-395
               

               
Cow position:
               
chr11:67246615-67246878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
32, 5
               

               
Conread position:
               
132-461
               

               
Cow position:
               
chr11:37804745-37804395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
134-370
               

               
Cow position:
               
chr11:49231688-49231941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 64
               

               
Conread position:
               
134-457
               

               
Cow position:
               
chr11:41215558-41215886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
134-458
               

               
Cow position:
               
chr11:63202425-63202093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
134-461
               

               
Cow position:
               
chr11:3702762-3703109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
57, 289
               

               
Conread position:
               
134-461
               

               
Cow position:
               
chr11:15382653-15382338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
238, 56
               

               
Conread position:
               
134-461
               

               
Cow position:
               
chr11:28367516-28367868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
35, 268
               

               
Conread position:
               
134-461
               

               
Cow position:
               
chr11:35723791-35724127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
134-461
               

               
Cow position:
               
chr11:70601009-70600670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
46, 110
               

               
Conread position:
               
134-461
               

               
Cow position:
               
chr11:72375874-72375509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
135-421
               

               
Cow position:
               
chr11:15373664-15373960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 60
               

               
Conread position:
               
138-397
               

               
Cow position:
               
chr11:31506673-31506944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
142-433
               

               
Cow position:
               
chr11:83687608-83687304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 23
               

               
Conread position:
               
142-461
               

               
Cow position:
               
chr11:37514395-37514714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
144-416
               

               
Cow position:
               
chr11:2932974-2933260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
145-397
               

               
Cow position:
               
chr11:77118534-77118794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
145-461
               

               
Cow position:
               
chr11:35791987-35791663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
147-450
               

               
Cow position:
               
chr11:63909833-63909509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
147-460
               

               
Cow position:
               
chr11:30369949-30370258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
148-397
               

               
Cow position:
               
chr11:71008961-71009218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
25, 181
               

               
Conread position:
               
148-461
               

               
Cow position:
               
chr11:51729130-51729431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
148-461
               

               
Cow position:
               
chr11:74380020-74380348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
25, 169
               

               
Conread position:
               
149-461
               

               
Cow position:
               
chr11:70950709-70951024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 96
               

               
Conread position:
               
150-459
               

               
Cow position:
               
chr11:59862040-59862365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
23, 132
               

               
Conread position:
               
152-461
               

               
Cow position:
               
chr11:75874922-75874615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
28, 33
               

               
Conread position:
               
153-388
               

               
Cow position:
               
chr11:21438046-21438295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
154-461
               

               
Cow position:
               
chr11:6194261-6194545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
155-460
               

               
Cow position:
               
chr11:45619182-45619506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
18, 270
               

               
Conread position:
               
155-461
               

               
Cow position:
               
chr11:30893851-30893543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
18, 137
               

               
Conread position:
               
158-461
               

               
Cow position:
               
chr11:49057254-49057540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
159-421
               

               
Cow position:
               
chr11:63917628-63917358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
159-461
               

               
Cow position:
               
chr11:33287116-33286798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
160-460
               

               
Cow position:
               
chr11:32693634-32693328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
161-461
               

               
Cow position:
               
chr11:55973077-55972773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
12, 106
               

               
Conread position:
               
163-460
               

               
Cow position:
               
chr11:32777534-32777830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
165-421
               

               
Cow position:
               
chr11:6633563-6633829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
172-397
               

               
Cow position:
               
chr11:64048270-64048498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
172-461
               

               
Cow position:
               
chr11:54387779-54388060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 51
               

               
Conread position:
               
173-453
               

               
Cow position:
               
chr11:30808731-30808443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chr11:27907640-27907927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
13, 112
               

               
Conread position:
               
178-457
               

               
Cow position:
               
chr11:5201770-5201492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
180-418
               

               
Cow position:
               
chr11:29983845-29983603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 177
               

               
Conread position:
               
180-455
               

               
Cow position:
               
chr11:53510626-53510350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
180-460
               

               
Cow position:
               
chr11:6423529-6423242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
181-397
               

               
Cow position:
               
chr11:7329711-7329923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
181-438
               

               
Cow position:
               
chr11:38236130-38236387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
181-461
               

               
Cow position:
               
chr11:18425365-18425082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
184-461
               

               
Cow position:
               
chr11:36286576-36286863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
184-461
               

               
Cow position:
               
chr11:75285888-75285599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
186-461
               

               
Cow position:
               
chr11:13940073-13940344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
26, 75
               

               
Conread position:
               
186-461
               

               
Cow position:
               
chr11:40395320-40395593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
186-461
               

               
Cow position:
               
chr11:56288427-56288702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
188-400
               

               
Cow position:
               
chr11:83033355-83033142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
188-460
               

               
Cow position:
               
chr11:80413128-80412853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
188-461
               

               
Cow position:
               
chr11:31874975-31875251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
189-461
               

               
Cow position:
               
chr11:40794464-40794194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
190-425
               

               
Cow position:
               
chr11:33345329-33345566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
17, 230
               

               
Conread position:
               
190-457
               

               
Cow position:
               
chr11:53649488-53649217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
191-461
               

               
Cow position:
               
chr11:8437801-8437530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
205, 68
               

               
Conread position:
               
192-397
               

               
Cow position:
               
chr11:53147650-53147437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 132
               

               
Conread position:
               
192-460
               

               
Cow position:
               
chr11:48383416-48383686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
193-339
               

               
Cow position:
               
chr11:36114049-36114193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
193-390
               

               
Cow position:
               
chr11:48306457-48306259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
193-397
               

               
Cow position:
               
chr11:40478961-40478758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
193-416
               

               
Cow position:
               
chr11:16907155-16906937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
193-421
               

               
Cow position:
               
chr11:64406116-64406348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
193-458
               

               
Cow position:
               
chr11:66572612-66572338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 129
               

               
Conread position:
               
193-461
               

               
Cow position:
               
chr11:375343-375615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 151
               

               
Conread position:
               
193-461
               

               
Cow position:
               
chr11:14470259-14470518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
193-461
               

               
Cow position:
               
chr11:48428995-48429275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
193-461
               

               
Cow position:
               
chr11:71492966-71492705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
193-461
               

               
Cow position:
               
chr11:73797286-73797011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
194-397
               

               
Cow position:
               
chr11:18785980-18785783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
195-461
               

               
Cow position:
               
chr11:8461888-8462162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 216
               

               
Conread position:
               
195-461
               

               
Cow position:
               
chr11:31024916-31024644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
196-452
               

               
Cow position:
               
chr11:19233059-19232802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
196-461
               

               
Cow position:
               
chr11:13864208-13863945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
197-397
               

               
Cow position:
               
chr11:38577876-38577684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
197-439
               

               
Cow position:
               
chr11:35709222-35708987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 173
               

               
Conread position:
               
199-335
               

               
Cow position:
               
chr11:7325657-7325796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
199-461
               

               
Cow position:
               
chr11:42066754-42067021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 97
               

               
Conread position:
               
199-461
               

               
Cow position:
               
chr11:62789024-62789284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
20, 203
               

               
Conread position:
               
200-461
               

               
Cow position:
               
chr11:37411631-37411365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
200-461
               

               
Cow position:
               
chr11:39060705-39060448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
7, 48
               

               
Conread position:
               
201-461
               

               
Cow position:
               
chr11:49872989-49872730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
18, 122
               

               
Conread position:
               
204-341
               

               
Cow position:
               
chr11:57170929-57170791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
204-383
               

               
Cow position:
               
chr11:75965749-75965571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
15, 61
               

               
Conread position:
               
204-397
               

               
Cow position:
               
chr11:12111553-12111364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
15, 124
               

               
Conread position:
               
204-397
               

               
Cow position:
               
chr11:56734530-56734723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
204-408
               

               
Cow position:
               
chr11:63920148-63919948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
204-457
               

               
Cow position:
               
chr11:76889950-76890200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
204-459
               

               
Cow position:
               
chr11:17493379-17493638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
204-460
               

               
Cow position:
               
chr11:15772814-15772557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 111
               

               
Conread position:
               
204-460
               

               
Cow position:
               
chr11:32055282-32055029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
204-460
               

               
Cow position:
               
chr11:43360882-43360631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
204-460
               

               
Cow position:
               
chr11:48659832-48660086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 202
               

               
Conread position:
               
204-460
               

               
Cow position:
               
chr11:58594487-58594230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
21, 42
               

               
Conread position:
               
204-460
               

               
Cow position:
               
chr11:63435418-63435678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 120
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr11:8545112-8544859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr11:16314773-16315031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr11:17036629-17036375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
15, 191
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr11:23251691-23251442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 106
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr11:28993831-28993591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr11:30209922-30209666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
18, 124
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr11:38334427-38334678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr11:46998885-46999143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr11:53816759-53817012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr11:59024453-59024196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
204-461
               

               
Cow position:
               
chr11:67600683-67600935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
15, 189
               

               
Conread position:
               
205-385
               

               
Cow position:
               
chr11:8428412-8428595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
205-461
               

               
Cow position:
               
chr11:83032583-83032834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
206-460
               

               
Cow position:
               
chr11:67615026-67614769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 204
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chr11:38670586-38670847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chr11:71390661-71390417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 147
               

               
Conread position:
               
207-460
               

               
Cow position:
               
chr11:72443015-72443270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
207-461
               

               
Cow position:
               
chr11:64101686-64101931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
208-421
               

               
Cow position:
               
chr11:30888376-30888161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
208-459
               

               
Cow position:
               
chr11:57503387-57503635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
208-461
               

               
Cow position:
               
chr11:37919138-37918891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
244, 7
               

               
Conread position:
               
209-412
               

               
Cow position:
               
chr11:7013838-7013637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 88
               

               
Conread position:
               
209-460
               

               
Cow position:
               
chr11:1067537-1067282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
209-461
               

               
Cow position:
               
chr11:8669913-8670174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
209-461
               

               
Cow position:
               
chr11:17676465-17676218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr11:48232730-48232950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
45, 189
               

               
Conread position:
               
211-461
               

               
Cow position:
               
chr11:3739860-3740121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
212-450
               

               
Cow position:
               
chr11:35536496-35536730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
212-461
               

               
Cow position:
               
chr11:49192549-49192298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
213-459
               

               
Cow position:
               
chr11:62889981-62889737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
214-461
               

               
Cow position:
               
chr11:83042350-83042083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
215-450
               

               
Cow position:
               
chr11:372784-372559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
187, 32
               

               
Conread position:
               
216-397
               

               
Cow position:
               
chr11:46952868-46953042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
136, 30
               

               
Conread position:
               
216-408
               

               
Cow position:
               
chr11:82107981-82107796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
216-455
               

               
Cow position:
               
chr11:47837227-47837473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
16, 87
               

               
Conread position:
               
217-421
               

               
Cow position:
               
chr11:22747415-22747211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 20
               

               
Conread position:
               
218-312
               

               
Cow position:
               
chr11:65435770-65435864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 55
               

               
Conread position:
               
218-334
               

               
Cow position:
               
chr11:21428077-21427961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
218-397
               

               
Cow position:
               
chr11:64868099-64867926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
218-398
               

               
Cow position:
               
chr11:27565251-27565427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
161, 33
               

               
Conread position:
               
218-437
               

               
Cow position:
               
chr11:83925966-83926174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
205, 40
               

               
Conread position:
               
218-439
               

               
Cow position:
               
chr11:47724818-47725025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
218-450
               

               
Cow position:
               
chr11:45742294-45742521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
218-452
               

               
Cow position:
               
chr11:32398552-32398789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 106
               

               
Conread position:
               
218-456
               

               
Cow position:
               
chr11:30830700-30830466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 186
               

               
Conread position:
               
218-457
               

               
Cow position:
               
chr11:33409345-33409110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
218-457
               

               
Cow position:
               
chr11:84890805-84890575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
38, 131
               

               
Conread position:
               
218-458
               

               
Cow position:
               
chr11:6202362-6202610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
144, 35
               

               
Conread position:
               
218-459
               

               
Cow position:
               
chr11:85191693-85191462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
218-460
               

               
Cow position:
               
chr11:30728318-30728557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
218-461
               

               
Cow position:
               
chr11:21422019-21421781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
218-461
               

               
Cow position:
               
chr11:32354070-32353829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
83, 27
               
UCSC Genome Browser

               
Conread position:
               
218-461
               

               
Cow position:
               
chr11:48085831-48086075 (view  custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 202
               
UCSC Genome Browser

               
               
               
Conread position:
218-461

               
               
               
Cow position:
chr11:62742718-62742491 (view  custom track)

               
               
               
Alignm length:
244

               
               
               
Alignm identity:
189

               
               
               
Alignm E-value:
9.94922e-44

               
               
               
Alignm gaps (pig, cow):
15, 0
UCSC Genome Browser

               
               
               
Conread position:
218-461

               
               
               
Cow position:
chr11:64009635-64009883 (view  custom track)

               
               
               
Alignm length:
250

               
               
               
Alignm identity:
181

               
               
               
Alignm E-value:
3e-39

               
               
               
Alignm gaps (pig, cow):
86, 134

               
               
               Conread position:218-461
               
               
               Cow position:chr11:70756397-70756631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:218-461
               
               
               Cow position:chr11:82289490-82289745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):24, 106

               
               
               Conread position:219-431
               
               
               Cow position:chr11:71935038-71934829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 40

               
               
               Conread position:219-454
               
               
               Cow position:chr11:53462860-53463092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):153, 36

               
               
               Conread position:219-458
               
               
               Cow position:chr11:4674528-4674290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):154, 35

               
               
               Conread position:219-461
               
               
               Cow position:chr11:52690605-52690368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:219-461
               
               
               Cow position:chr11:62964406-62964651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:220-461
               
               
               Cow position:chr11:22676034-22676269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 7

               
               
               Conread position:221-307
               
               
               Cow position:chr11:36066300-36066216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:221-315
               
               
               Cow position:chr11:34622872-34622969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:221-378
               
               
               Cow position:chr11:55203541-55203384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:221-389
               
               
               Cow position:chr11:53279796-53279628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:221-390
               
               
               Cow position:chr11:77546336-77546503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:221-393
               
               
               Cow position:chr11:55494596-55494770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:221-393
               
               
               Cow position:chr11:63687697-63687529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:221-397
               
               
               Cow position:chr11:71501213-71501038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:221-400
               
               
               Cow position:chr11:41603771-41603589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:221-421
               
               
               Cow position:chr11:5789972-5789781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:221-421
               
               
               Cow position:chr11:72333511-72333707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:221-437
               
               
               Cow position:chr11:70086247-70086461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:221-450
               
               
               Cow position:chr11:69844288-69844514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):131, 24

               
               
               Conread position:221-457
               
               
               Cow position:chr11:3715154-3715395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:221-457
               
               
               Cow position:chr11:5602370-5602610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:221-457
               
               
               Cow position:chr11:19592072-19591840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:221-457
               
               
               Cow position:chr11:62813033-62812799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:221-457
               
               
               Cow position:chr11:69977894-69978121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:221-458
               
               
               Cow position:chr11:4199191-4199428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):185, 37

               
               
               Conread position:221-458
               
               
               Cow position:chr11:63396735-63396972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:221-458
               
               
               Cow position:chr11:84228794-84228569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:221-459
               
               
               Cow position:chr11:14875859-14875613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:221-460
               
               
               Cow position:chr11:17508640-17508395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:221-460
               
               
               Cow position:chr11:62482555-62482798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 186

               
               
               Conread position:221-460
               
               
               Cow position:chr11:68112346-68112103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):32, 187

               
               
               Conread position:221-460
               
               
               Cow position:chr11:85703625-85703845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:221-461
               
               
               Cow position:chr11:2874310-2874559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:221-461
               
               
               Cow position:chr11:3908693-3908457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:221-461
               
               
               Cow position:chr11:6245241-6245478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):172, 30

               
               
               Conread position:221-461
               
               
               Cow position:chr11:8457984-8457743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:221-461
               
               
               Cow position:chr11:21507922-21508168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:221-461
               
               
               Cow position:chr11:23272084-23271849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:221-461
               
               
               Cow position:chr11:29308493-29308739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:221-461
               
               
               Cow position:chr11:32254299-32254059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 181

               
               
               Conread position:221-461
               
               
               Cow position:chr11:36914649-36914408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:221-461
               
               
               Cow position:chr11:36940677-36940437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:221-461
               
               
               Cow position:chr11:41280958-41281203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:221-461
               
               
               Cow position:chr11:41313738-41313505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:221-461
               
               
               Cow position:chr11:45277227-45276991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):175, 23

               
               
               Conread position:221-461
               
               
               Cow position:chr11:45700408-45700648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:221-461
               
               
               Cow position:chr11:48672632-48672871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:221-461
               
               
               Cow position:chr11:50472236-50472475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:221-461
               
               
               Cow position:chr11:61525987-61526236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):191, 40

               
               
               Conread position:221-461
               
               
               Cow position:chr11:68913061-68913300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 30

               
               
               Conread position:221-461
               
               
               Cow position:chr11:70206240-70206472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:221-461
               
               
               Cow position:chr11:75177813-75178055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):155, 132

               
               
               Conread position:221-461
               
               
               Cow position:chr11:81168113-81167874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 130

               
               
               Conread position:222-344
               
               
               Cow position:chr11:83000615-83000488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 125

               
               
               Conread position:222-397
               
               
               Cow position:chr11:47004264-47004440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):32, 154

               
               
               Conread position:222-400
               
               
               Cow position:chr11:69652865-69652679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:222-412
               
               
               Cow position:chr11:4653058-4652863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:222-421
               
               
               Cow position:chr11:70825870-70826067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:222-450
               
               
               Cow position:chr11:9270806-9270588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:222-457
               
               
               Cow position:chr11:84385716-84385484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:222-461
               
               
               Cow position:chr11:30165431-30165668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:222-461
               
               
               Cow position:chr11:63999170-63998933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:223-411
               
               
               Cow position:chr11:71807650-71807458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:223-420
               
               
               Cow position:chr11:35573568-35573374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:223-421
               
               
               Cow position:chr11:66518410-66518604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:223-450
               
               
               Cow position:chr11:19946355-19946573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:224-418
               
               
               Cow position:chr11:28168503-28168307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 49

               
               
               Conread position:224-425
               
               
               Cow position:chr11:49721823-49722020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:224-452
               
               
               Cow position:chr11:35926985-35926760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:224-456
               
               
               Cow position:chr11:31410962-31410728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):46, 189

               
               
               Conread position:224-457
               
               
               Cow position:chr11:47639107-47638871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 124

               
               
               Conread position:224-457
               
               
               Cow position:chr11:67312692-67312941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:224-460
               
               
               Cow position:chr11:15062366-15062606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:224-461
               
               
               Cow position:chr11:17721883-17721644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):27, 184

               
               
               Conread position:224-461
               
               
               Cow position:chr11:68841124-68841366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:225-461
               
               
               Cow position:chr11:48295955-48296182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:225-461
               
               
               Cow position:chr11:73573569-73573804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:226-450
               
               
               Cow position:chr11:36920656-36920428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 178

               
               
               Conread position:227-426
               
               
               Cow position:chr11:37999184-37999388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:227-460
               
               
               Cow position:chr11:35981224-35980985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 140

               
               
               Conread position:227-461
               
               
               Cow position:chr11:68883646-68883877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:228-383
               
               
               Cow position:chr11:7299058-7299215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:228-458
               
               
               Cow position:chr11:47311059-47310830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):19, 71

               
               
               Conread position:228-461
               
               
               Cow position:chr11:6297155-6296921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:228-461
               
               
               Cow position:chr11:20684648-20684413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:228-461
               
               
               Cow position:chr11:29699775-29699530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 76

               
               
               Conread position:228-461
               
               
               Cow position:chr11:36977731-36977964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:229-422
               
               
               Cow position:chr11:64351867-64351671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:229-450
               
               
               Cow position:chr11:953282-953504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:230-451
               
               
               Cow position:chr11:7559925-7560148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:230-457
               
               
               Cow position:chr11:26633081-26632859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:230-461
               
               
               Cow position:chr11:61675396-61675621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:232-461
               
               
               Cow position:chr11:1147441-1147209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:232-461
               
               
               Cow position:chr11:55636301-55636068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):17, 127

               
               
               Conread position:233-461
               
               
               Cow position:chr11:11994778-11994555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:237-457
               
               
               Cow position:chr11:35109603-35109384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 75

               
               
               Conread position:237-461
               
               
               Cow position:chr11:5231718-5231490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:239-461
               
               
               Cow position:chr11:80893717-80893939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:241-461
               
               
               Cow position:chr11:10956934-10956717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:242-460
               
               
               Cow position:chr11:62230120-62230344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:242-461
               
               
               Cow position:chr11:29677144-29677364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:242-461
               
               
               Cow position:chr11:32126544-32126773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:242-461
               
               
               Cow position:chr11:81248874-81249091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:243-461
               
               
               Cow position:chr11:6107985-6107764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:244-457
               
               
               Cow position:chr11:22102960-22102745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:244-457
               
               
               Cow position:chr11:68555154-68554938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:244-461
               
               
               Cow position:chr11:2788333-2788552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:244-461
               
               
               Cow position:chr11:32710455-32710673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:244-461
               
               
               Cow position:chr11:41438246-41438028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:245-415
               
               
               Cow position:chr11:68173472-68173645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:245-459
               
               
               Cow position:chr11:35665623-35665408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 127

               
               
               Conread position:245-461
               
               
               Cow position:chr11:8259017-8259234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 87

               
               
               Conread position:245-461
               
               
               Cow position:chr11:9234286-9234069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 135

               
               
               Conread position:245-461
               
               
               Cow position:chr11:15369329-15369546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:245-461
               
               
               Cow position:chr11:18851851-18852060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-461
               
               
               Cow position:chr11:75090276-75090062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:246-457
               
               
               Cow position:chr11:689718-689506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 102

               
               
               Conread position:247-461
               
               
               Cow position:chr11:61454568-61454346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):151, 17

               
               
               Conread position:249-461
               
               
               Cow position:chr11:41212989-41213209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:250-461
               
               
               Cow position:chr11:32881092-32881302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:250-461
               
               
               Cow position:chr11:34644602-34644815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):7, 55

               
               
               Conread position:250-461
               
               
               Cow position:chr11:35562667-35562878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 5

               
               
               Conread position:251-416
               
               
               Cow position:chr11:34692801-34692967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:251-421
               
               
               Cow position:chr11:56290461-56290630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:251-461
               
               
               Cow position:chr11:22319190-22319404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:251-461
               
               
               Cow position:chr11:39554248-39554032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:252-414
               
               
               Cow position:chr11:61137225-61137063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:252-421
               
               
               Cow position:chr11:83579227-83579054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):6, 22

               
               
               Conread position:252-450
               
               
               Cow position:chr11:81762812-81763024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):118, 48

               
               
               Conread position:252-454
               
               
               Cow position:chr11:84498999-84498793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):160, 6

               
               
               Conread position:252-456
               
               
               Cow position:chr11:30964296-30964495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:252-461
               
               
               Cow position:chr11:20205902-20205701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:252-461
               
               
               Cow position:chr11:34896512-34896720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:252-461
               
               
               Cow position:chr11:39855064-39854865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:252-461
               
               
               Cow position:chr11:58927533-58927730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 80

               
               
               Conread position:252-461
               
               
               Cow position:chr11:82731047-82730827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):152, 8

               
               
               Conread position:253-450
               
               
               Cow position:chr11:35670000-35669811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:253-461
               
               
               Cow position:chr11:15017009-15017215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:253-461
               
               
               Cow position:chr11:37778880-37778660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:253-461
               
               
               Cow position:chr11:53888685-53888492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:253-461
               
               
               Cow position:chr11:62754368-62754141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:254-454
               
               
               Cow position:chr11:85571853-85571654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:254-457
               
               
               Cow position:chr11:37436034-37435834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:254-461
               
               
               Cow position:chr11:31525827-31526037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:255-397
               
               
               Cow position:chr11:21910674-21910532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:124
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:255-412
               
               
               Cow position:chr11:16320239-16320394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):139, 38

               
               
               Conread position:255-425
               
               
               Cow position:chr11:32684580-32684750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:255-457
               
               
               Cow position:chr11:4392401-4392193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:255-459
               
               
               Cow position:chr11:35805611-35805815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):58, 41

               
               
               Conread position:255-460
               
               
               Cow position:chr11:8584280-8584471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:255-461
               
               
               Cow position:chr11:3405234-3405029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:255-461
               
               
               Cow position:chr11:3597070-3597276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:255-461
               
               
               Cow position:chr11:6857683-6857888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):143, 31

               
               
               Conread position:255-461
               
               
               Cow position:chr11:12077133-12076928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:255-461
               
               
               Cow position:chr11:18924698-18924904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):145, 149

               
               
               Conread position:255-461
               
               
               Cow position:chr11:19119030-19118825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:255-461
               
               
               Cow position:chr11:20194473-20194267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:255-461
               
               
               Cow position:chr11:42786740-42786525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:255-461
               
               
               Cow position:chr11:44016926-44017141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:255-461
               
               
               Cow position:chr11:56311643-56311443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:255-461
               
               
               Cow position:chr11:63484899-63485089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:255-461
               
               
               Cow position:chr11:63866706-63866504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):117, 41

               
               
               Conread position:255-461
               
               
               Cow position:chr11:66326157-66325950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):19, 15

               
               
               Conread position:257-397
               
               
               Cow position:chr11:48063846-48063706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:257-439
               
               
               Cow position:chr11:45849545-45849361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:257-455
               
               
               Cow position:chr11:71707771-71707960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:257-461
               
               
               Cow position:chr11:35352084-35351876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:258-367
               
               
               Cow position:chr11:65624837-65624729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:258-389
               
               
               Cow position:chr11:31352596-31352465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:258-430
               
               
               Cow position:chr11:34630497-34630319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:258-431
               
               
               Cow position:chr11:76835669-76835496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:258-457
               
               
               Cow position:chr11:48233560-48233360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):136, 156

               
               
               Conread position:258-458
               
               
               Cow position:chr11:18447536-18447347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:258-458
               
               
               Cow position:chr11:39249928-39250120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:258-459
               
               
               Cow position:chr11:5219203-5219010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:258-459
               
               
               Cow position:chr11:71854323-71854129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:258-460
               
               
               Cow position:chr11:77013740-77013926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:258-461
               
               
               Cow position:chr11:1932536-1932331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 146

               
               
               Conread position:258-461
               
               
               Cow position:chr11:7500698-7500906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):46, 193

               
               
               Conread position:258-461
               
               
               Cow position:chr11:27462142-27461954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:258-461
               
               
               Cow position:chr11:29786544-29786336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:258-461
               
               
               Cow position:chr11:30172265-30172456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:258-461
               
               
               Cow position:chr11:35444000-35444202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:258-461
               
               
               Cow position:chr11:37989664-37989466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:258-461
               
               
               Cow position:chr11:54742125-54741928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:258-461
               
               
               Cow position:chr11:62811253-62811453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:259-396
               
               
               Cow position:chr11:80616200-80616329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:259-410
               
               
               Cow position:chr11:7307588-7307740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):93, 142

               
               
               Conread position:259-449
               
               
               Cow position:chr11:84977402-84977220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):107, 141

               
               
               Conread position:259-458
               
               
               Cow position:chr11:28078460-28078643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:259-460
               
               
               Cow position:chr11:3714782-3714978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:259-460
               
               
               Cow position:chr11:43914250-43914449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:259-461
               
               
               Cow position:chr11:27343227-27343429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:259-461
               
               
               Cow position:chr11:78820111-78820306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:260-450
               
               
               Cow position:chr11:53853046-53853236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:260-457
               
               
               Cow position:chr11:34136201-34136394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:260-460
               
               
               Cow position:chr11:25698330-25698129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:260-461
               
               
               Cow position:chr11:25119973-25119779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:261-412
               
               
               Cow position:chr11:29946955-29946803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:261-457
               
               
               Cow position:chr11:21885792-21885986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:261-460
               
               
               Cow position:chr11:6006265-6006465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:262-461
               
               
               Cow position:chr11:36520834-36521037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):80, 137

               
               
               Conread position:262-461
               
               
               Cow position:chr11:71110851-71111055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):140, 195

               
               
               Conread position:264-393
               
               
               Cow position:chr11:57331763-57331891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:264-432
               
               
               Cow position:chr11:18608276-18608109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):148, 127

               
               
               Conread position:264-457
               
               
               Cow position:chr11:63695177-63695370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:264-461
               
               
               Cow position:chr11:1980307-1980108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:265-426
               
               
               Cow position:chr11:53717844-53717684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:265-461
               
               
               Cow position:chr11:33971841-33971643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 139

               
               
               Conread position:266-418
               
               
               Cow position:chr11:58173589-58173740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:266-427
               
               
               Cow position:chr11:58938781-58938622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):109, 116

               
               
               Conread position:269-440
               
               
               Cow position:chr11:9237880-9237709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:270-414
               
               
               Cow position:chr11:69415629-69415487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:270-420
               
               
               Cow position:chr11:62168363-62168214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:129
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:270-458
               
               
               Cow position:chr11:5792373-5792562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:270-461
               
               
               Cow position:chr11:32260502-32260688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):165, 27

               
               
               Conread position:270-461
               
               
               Cow position:chr11:69417371-69417560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:271-458
               
               
               Cow position:chr11:31537471-31537294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):129, 65

               
               
               Conread position:271-461
               
               
               Cow position:chr11:21173465-21173280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:271-461
               
               
               Cow position:chr11:64408945-64409123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:272-401
               
               
               Cow position:chr11:16719215-16719344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):112, 56

               
               
               Conread position:272-458
               
               
               Cow position:chr11:34968644-34968459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:272-460
               
               
               Cow position:chr11:3896729-3896542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):120, 29

               
               
               Conread position:272-460
               
               
               Cow position:chr11:30895034-30894847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:272-461
               
               
               Cow position:chr11:5467041-5467238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:272-461
               
               
               Cow position:chr11:28675046-28675234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:272-461
               
               
               Cow position:chr11:35768855-35769044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:272-461
               
               
               Cow position:chr11:63975099-63975288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:272-461
               
               
               Cow position:chr11:66939623-66939434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:152
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:272-461
               
               
               Cow position:chr11:78544253-78544442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-461
               
               
               Cow position:chr11:40517144-40516958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:274-461
               
               
               Cow position:chr11:55399176-55398994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:275-461
               
               
               Cow position:chr11:45350539-45350353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:275-461
               
               
               Cow position:chr11:70458014-70458201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):55, 114

               
               
               Conread position:276-460
               
               
               Cow position:chr11:46245891-46245703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:276-460
               
               
               Cow position:chr11:63165673-63165495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:276-461
               
               
               Cow position:chr11:60486446-60486259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):8, 175

               
               
               Conread position:277-456
               
               
               Cow position:chr11:58231388-58231575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:277-460
               
               
               Cow position:chr11:73984029-73983834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:277-461
               
               
               Cow position:chr11:5454727-5454537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:277-461
               
               
               Cow position:chr11:32782909-32782717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:278-398
               
               
               Cow position:chr11:17559106-17559226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:278-428
               
               
               Cow position:chr11:30404539-30404701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:278-459
               
               
               Cow position:chr11:47784750-47784935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:278-461
               
               
               Cow position:chr11:4221294-4221474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:278-461
               
               
               Cow position:chr11:6352779-6352965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:279-408
               
               
               Cow position:chr11:40860582-40860453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:280-460
               
               
               Cow position:chr11:25783690-25783871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:147
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:280-461
               
               
               Cow position:chr11:68660633-68660456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:281-459
               
               
               Cow position:chr11:8684101-8683923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:281-461
               
               
               Cow position:chr11:80586252-80586423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 119

               
               
               Conread position:282-418
               
               
               Cow position:chr11:52415414-52415547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:282-437
               
               
               Cow position:chr11:15683000-15682850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:282-457
               
               
               Cow position:chr11:10562988-10563158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):80, 126

               
               
               Conread position:282-457
               
               
               Cow position:chr11:17517378-17517555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:282-460
               
               
               Cow position:chr11:62004492-62004313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:282-461
               
               
               Cow position:chr11:46884353-46884532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:145
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:282-461
               
               
               Cow position:chr11:49207691-49207868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:284-407
               
               
               Cow position:chr11:1955907-1955785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:284-459
               
               
               Cow position:chr11:66099881-66099702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:284-461
               
               
               Cow position:chr11:35149380-35149559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):119, 83

               
               
               Conread position:284-461
               
               
               Cow position:chr11:60516551-60516376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-450
               
               
               Cow position:chr11:29482453-29482286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:285-459
               
               
               Cow position:chr11:18792085-18791908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:285-461
               
               
               Cow position:chr11:12555323-12555147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):68, 61

               
               
               Conread position:286-398
               
               
               Cow position:chr11:81728665-81728553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:286-414
               
               
               Cow position:chr11:18189752-18189625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:286-452
               
               
               Cow position:chr11:56406660-56406817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:286-458
               
               
               Cow position:chr11:42084692-42084519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:144
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:286-460
               
               
               Cow position:chr11:21830226-21830055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:286-460
               
               
               Cow position:chr11:75246143-75246321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:286-461
               
               
               Cow position:chr11:18119485-18119659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):55, 67

               
               
               Conread position:286-461
               
               
               Cow position:chr11:25968867-25968696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:286-461
               
               
               Cow position:chr11:73940576-73940405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:286-461
               
               
               Cow position:chr11:74427661-74427836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:286-461
               
               
               Cow position:chr11:77208060-77208244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:287-421
               
               
               Cow position:chr11:74720709-74720844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:287-421
               
               
               Cow position:chr11:81605843-81605976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:287-457
               
               
               Cow position:chr11:27502717-27502547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:287-457
               
               
               Cow position:chr11:87172092-87171923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:287-458
               
               
               Cow position:chr11:19577926-19578096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:287-460
               
               
               Cow position:chr11:35139892-35140066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:287-461
               
               
               Cow position:chr11:15366988-15366821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:287-461
               
               
               Cow position:chr11:37100184-37100015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:287-461
               
               
               Cow position:chr11:68326879-68326705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:288-400
               
               
               Cow position:chr11:65843088-65842977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:288-418
               
               
               Cow position:chr11:62808520-62808393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:288-421
               
               
               Cow position:chr11:47586073-47585944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:288-435
               
               
               Cow position:chr11:63517097-63517242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:288-450
               
               
               Cow position:chr11:41983181-41983012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:288-457
               
               
               Cow position:chr11:86895362-86895525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:288-458
               
               
               Cow position:chr11:79707699-79707857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:288-459
               
               
               Cow position:chr11:20234670-20234841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:288-460
               
               
               Cow position:chr11:25614828-25614647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:288-460
               
               
               Cow position:chr11:36361657-36361485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:288-461
               
               
               Cow position:chr11:21124621-21124452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:288-461
               
               
               Cow position:chr11:77017227-77017387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:289-458
               
               
               Cow position:chr11:20117060-20117229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):45, 100

               
               
               Conread position:289-461
               
               
               Cow position:chr11:35183002-35182830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:289-461
               
               
               Cow position:chr11:49396539-49396369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:290-435
               
               
               Cow position:chr11:31901173-31901313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 118

               
               
               Conread position:290-458
               
               
               Cow position:chr11:25603935-25604107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:290-460
               
               
               Cow position:chr11:35434676-35434501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:290-460
               
               
               Cow position:chr11:43627331-43627161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 43

               
               
               Conread position:290-461
               
               
               Cow position:chr11:12079824-12080000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:290-461
               
               
               Cow position:chr11:60296718-60296895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):131, 36

               
               
               Conread position:291-460
               
               
               Cow position:chr11:27760506-27760674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):106, 113

               
               
               Conread position:291-460
               
               
               Cow position:chr11:63849271-63849102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:291-461
               
               
               Cow position:chr11:6094414-6094247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:291-461
               
               
               Cow position:chr11:42189473-42189304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:291-461
               
               
               Cow position:chr11:47411830-47411999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:292-416
               
               
               Cow position:chr11:32615725-32615850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:292-455
               
               
               Cow position:chr11:19549474-19549630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:292-457
               
               
               Cow position:chr11:41980215-41980048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:292-460
               
               
               Cow position:chr11:75557949-75557768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 179

               
               
               Conread position:292-461
               
               
               Cow position:chr11:47110242-47110413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:293-414
               
               
               Cow position:chr11:37923262-37923382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:293-450
               
               
               Cow position:chr11:85723187-85723344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:293-460
               
               
               Cow position:chr11:64781077-64781244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:294-417
               
               
               Cow position:chr11:46333465-46333588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:294-461
               
               
               Cow position:chr11:5176388-5176224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 115

               
               
               Conread position:294-461
               
               
               Cow position:chr11:23518628-23518460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:294-461
               
               
               Cow position:chr11:35922202-35922039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:294-461
               
               
               Cow position:chr11:63407691-63407851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:295-461
               
               
               Cow position:chr11:38803-38974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:295-461
               
               
               Cow position:chr11:36917784-36917608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):111, 72

               
               
               Conread position:296-439
               
               
               Cow position:chr11:79869319-79869465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:296-446
               
               
               Cow position:chr11:15526107-15526257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:296-457
               
               
               Cow position:chr11:36300584-36300428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:296-461
               
               
               Cow position:chr11:7571618-7571777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:297-434
               
               
               Cow position:chr11:69624577-69624441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:297-437
               
               
               Cow position:chr11:81614519-81614379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:298-457
               
               
               Cow position:chr11:1076388-1076560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:298-457
               
               
               Cow position:chr11:33368078-33368227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:298-460
               
               
               Cow position:chr11:9279428-9279588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):154, 57

               
               
               Conread position:298-460
               
               
               Cow position:chr11:57767186-57767345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr11:2835854-2836017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr11:5264092-5264253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr11:36136103-36136265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:298-461
               
               
               Cow position:chr11:42064229-42064067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr11:60720460-60720297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:140
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr11:63499131-63498974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr11:67538122-67537959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:299-460
               
               
               Cow position:chr11:79666265-79666106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:299-461
               
               
               Cow position:chr11:23220358-23220517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):5, 104

               
               
               Conread position:299-461
               
               
               Cow position:chr11:64023103-64022953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:300-405
               
               
               Cow position:chr11:65858080-65858185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:300-421
               
               
               Cow position:chr11:37982580-37982459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:300-460
               
               
               Cow position:chr11:58472246-58472406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:300-461
               
               
               Cow position:chr11:42065647-42065809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:301-457
               
               
               Cow position:chr11:80296854-80296703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:302-461
               
               
               Cow position:chr11:38226242-38226400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:303-451
               
               
               Cow position:chr11:79548937-79548790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:303-457
               
               
               Cow position:chr11:76248050-76248202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:303-460
               
               
               Cow position:chr11:30322492-30322338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:303-460
               
               
               Cow position:chr11:85186527-85186371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 81

               
               
               Conread position:303-461
               
               
               Cow position:chr11:9836456-9836298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:303-461
               
               
               Cow position:chr11:80370115-80370271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:135
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:304-421
               
               
               Cow position:chr11:46452137-46452252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:304-441
               
               
               Cow position:chr11:61178359-61178489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:304-457
               
               
               Cow position:chr11:44619956-44620109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:304-461
               
               
               Cow position:chr11:40538552-40538706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:304-461
               
               
               Cow position:chr11:41278187-41278344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:304-461
               
               
               Cow position:chr11:77241707-77241859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:305-437
               
               
               Cow position:chr11:84757835-84757967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:305-452
               
               
               Cow position:chr11:5936113-5935966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:305-459
               
               
               Cow position:chr11:35960979-35960826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:305-461
               
               
               Cow position:chr11:1159815-1159969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:305-461
               
               
               Cow position:chr11:33373968-33374123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:305-461
               
               
               Cow position:chr11:81066047-81065893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:306-460
               
               
               Cow position:chr11:34778440-34778286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:306-461
               
               
               Cow position:chr11:4363908-4363756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:306-461
               
               
               Cow position:chr11:30600188-30600033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:306-461
               
               
               Cow position:chr11:68829623-68829779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:307-441
               
               
               Cow position:chr11:38201974-38202108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:307-457
               
               
               Cow position:chr11:74152750-74152596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:307-460
               
               
               Cow position:chr11:26442500-26442347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:307-461
               
               
               Cow position:chr11:6320128-6319974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:307-461
               
               
               Cow position:chr11:26343106-26343259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:307-461
               
               
               Cow position:chr11:42497849-42498001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:308-421
               
               
               Cow position:chr11:75246354-75246466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:308-458
               
               
               Cow position:chr11:63849946-63849796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:308-458
               
               
               Cow position:chr11:78672676-78672825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:308-460
               
               
               Cow position:chr11:35924066-35924218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):44, 129

               
               
               Conread position:308-461
               
               
               Cow position:chr11:44176602-44176750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:308-461
               
               
               Cow position:chr11:46314016-46314170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):98, 106

               
               
               Conread position:309-456
               
               
               Cow position:chr11:17807956-17807809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:309-457
               
               
               Cow position:chr11:49486785-49486942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:309-458
               
               
               Cow position:chr11:19148130-19147988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:310-461
               
               
               Cow position:chr11:21590392-21590545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:311-420
               
               
               Cow position:chr11:13843456-13843565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:311-461
               
               
               Cow position:chr11:7427932-7427777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:312-461
               
               
               Cow position:chr11:38223778-38223636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:312-461
               
               
               Cow position:chr11:62102436-62102289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:313-460
               
               
               Cow position:chr11:4411858-4411717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:313-461
               
               
               Cow position:chr11:20021830-20021988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:313-461
               
               
               Cow position:chr11:68570370-68570224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):120, 86

               
               
               Conread position:314-461
               
               
               Cow position:chr11:7652055-7651908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:315-421
               
               
               Cow position:chr11:34623183-34623289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:315-457
               
               
               Cow position:chr11:55117457-55117599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:315-460
               
               
               Cow position:chr11:35544097-35544242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:315-461
               
               
               Cow position:chr11:26057638-26057490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:316-461
               
               
               Cow position:chr11:32800639-32800784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:316-461
               
               
               Cow position:chr11:35733070-35732926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:316-461
               
               
               Cow position:chr11:59471115-59471261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:317-450
               
               
               Cow position:chr11:6413684-6413553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:317-450
               
               
               Cow position:chr11:15999672-15999803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:317-450
               
               
               Cow position:chr11:27688376-27688245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:317-450
               
               
               Cow position:chr11:37490562-37490431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:317-461
               
               
               Cow position:chr11:33369165-33369309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:317-461
               
               
               Cow position:chr11:36847182-36847326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:317-461
               
               
               Cow position:chr11:54872745-54872604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:320-461
               
               
               Cow position:chr11:32108671-32108531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:320-461
               
               
               Cow position:chr11:63475655-63475514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 83

               
               
               Conread position:321-450
               
               
               Cow position:chr11:44859268-44859141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:321-461
               
               
               Cow position:chr11:5559300-5559440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:321-461
               
               
               Cow position:chr11:37564892-37565026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:321-461
               
               
               Cow position:chr11:76896356-76896216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:321-461
               
               
               Cow position:chr11:81175615-81175755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:322-418
               
               
               Cow position:chr11:80596357-80596453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:322-461
               
               
               Cow position:chr11:17553061-17552922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 56

               
               
               Conread position:323-439
               
               
               Cow position:chr11:67208273-67208389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:323-461
               
               
               Cow position:chr11:63695825-63695682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:323-461
               
               
               Cow position:chr11:71303599-71303736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:324-441
               
               
               Cow position:chr11:46010232-46010115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:324-461
               
               
               Cow position:chr11:43641408-43641545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:324-461
               
               
               Cow position:chr11:62606438-62606575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:326-450
               
               
               Cow position:chr11:34279766-34279891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:328-458
               
               
               Cow position:chr11:63491043-63491173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:330-459
               
               
               Cow position:chr11:44016271-44016400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:330-461
               
               
               Cow position:chr11:51683243-51683373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:331-461
               
               
               Cow position:chr11:15881392-15881263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:332-461
               
               
               Cow position:chr11:17369560-17369683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:332-461
               
               
               Cow position:chr11:18574826-18574697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:332-461
               
               
               Cow position:chr11:33271460-33271586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:332-461
               
               
               Cow position:chr11:56348801-56348674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:332-461
               
               
               Cow position:chr11:73637884-73638012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:336-457
               
               
               Cow position:chr11:12742457-12742338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 63

               
               
               Conread position:337-461
               
               
               Cow position:chr11:8828040-8828167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:337-461
               
               
               Cow position:chr11:24551425-24551548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:337-461
               
               
               Cow position:chr11:32817782-32817659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:339-460
               
               
               Cow position:chr11:65436257-65436378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:340-461
               
               
               Cow position:chr11:69035196-69035317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:341-461
               
               
               Cow position:chr11:26823148-26823269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:341-461
               
               
               Cow position:chr11:38657145-38657025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:342-461
               
               
               Cow position:chr11:80695203-80695084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:345-458
               
               
               Cow position:chr11:899476-899590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:346-461
               
               
               Cow position:chr11:32584858-32584978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:348-461
               
               
               Cow position:chr11:53460742-53460855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:351-461
               
               
               Cow position:chr11:65939814-65939705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:358-460
               
               
               Cow position:chr11:43594373-43594272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:360-461
               
               
               Cow position:chr11:67417866-67417966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 0
Show alignments to all cow chromosomes.