Non-Coding RNA Search

Cow genome map


           Conread name:
           ruio02_f11.y1
        

               Conread position:
               1-183
               

               Cow position:
               chr21:20588796-20588971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               122, 31
               

               Conread position:
               1-218
               

               Cow position:
               chr21:8985314-8985524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               116, 30
               

               Conread position:
               1-218
               

               Cow position:
               chr21:10151560-10151772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               119, 30
               

               Conread position:
               1-224
               

               Cow position:
               chr21:16909820-16910046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               120, 30
               

               Conread position:
               1-224
               

               Cow position:
               chr21:46263942-46264155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               119, 21
               

               Conread position:
               1-228
               

               Cow position:
               chr21:42190402-42190188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               120, 30
               

               Conread position:
               1-231
               

               Cow position:
               chr21:5344426-5344647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               119, 30
               

               Conread position:
               1-231
               

               Cow position:
               chr21:7564557-7564328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               119, 39
               

               Conread position:
               1-231
               

               Cow position:
               chr21:23683315-23683537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               172, 39
               

               Conread position:
               1-231
               

               Cow position:
               chr21:40058571-40058794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               116, 41
               

               Conread position:
               1-233
               

               Cow position:
               chr21:36163198-36162969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 40
               

               Conread position:
               1-244
               

               Cow position:
               chr21:33419950-33419720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               172, 36
               

               Conread position:
               1-256
               

               Cow position:
               chr21:641349-641601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               196
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               120, 34
               

               Conread position:
               1-256
               

               Cow position:
               chr21:12961148-12960886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               34, 87
               

               Conread position:
               1-310
               

               Cow position:
               chr21:363420-363722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 30
               

               Conread position:
               1-360
               

               Cow position:
               chr21:725125-724746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 30
               

               Conread position:
               1-371
               

               Cow position:
               chr21:16188031-16187657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               267
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               119, 29
               

               Conread position:
               1-372
               

               Cow position:
               chr21:33997460-33997076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 45
               

               Conread position:
               1-372
               

               Cow position:
               chr21:41878241-41878620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 39
               

               Conread position:
               1-387
               

               Cow position:
               chr21:46973370-46972984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               280
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               26, 122
               

               Conread position:
               1-396
               

               Cow position:
               chr21:10514577-10514976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               302
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               120, 28
               

               Conread position:
               1-397
               

               Cow position:
               chr21:21223049-21223457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 75
               

               Conread position:
               1-397
               

               Cow position:
               chr21:28429215-28429620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 17
               

               Conread position:
               1-400
               

               Cow position:
               chr21:15976406-15976811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 17
               

               Conread position:
               1-400
               

               Cow position:
               chr21:25764400-25764814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               290
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               119, 39
               

               Conread position:
               1-415
               

               Cow position:
               chr21:4399565-4399997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 30
               

               Conread position:
               1-418
               

               Cow position:
               chr21:23322316-23321881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 38
               

               Conread position:
               1-421
               

               Cow position:
               chr21:26244692-26245114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 54
               

               Conread position:
               1-421
               

               Cow position:
               chr21:33562779-33563203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 28
               

               Conread position:
               1-421
               

               Cow position:
               chr21:36795365-36795803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 30
               

               Conread position:
               1-450
               

               Cow position:
               chr21:9416007-9416476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 30
               

               Conread position:
               1-458
               

               Cow position:
               chr21:10071164-10070689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               330
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               174, 33
               

               Conread position:
               1-460
               

               Cow position:
               chr21:20160449-20160914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 30
               

               Conread position:
               1-460
               

               Cow position:
               chr21:29069563-29069087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 30
               

               Conread position:
               1-461
               

               Cow position:
               chr21:1483257-1483711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 20
               

               Conread position:
               1-461
               

               Cow position:
               chr21:3236297-3236740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               341
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               192, 30
               

               Conread position:
               1-461
               

               Cow position:
               chr21:6713773-6713287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 30
               

               Conread position:
               1-461
               

               Cow position:
               chr21:10263806-10264272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 21
               

               Conread position:
               1-461
               

               Cow position:
               chr21:11740367-11739882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               335
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               72, 38
               

               Conread position:
               1-461
               

               Cow position:
               chr21:12153898-12154362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 38
               

               Conread position:
               1-461
               

               Cow position:
               chr21:15445314-15444845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 40
               

               Conread position:
               1-461
               

               Cow position:
               chr21:19196403-19195924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 30
               

               Conread position:
               1-461
               

               Cow position:
               chr21:23672511-23672982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 41
               

               Conread position:
               1-461
               

               Cow position:
               chr21:25344643-25345101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 30
               

               Conread position:
               1-461
               

               Cow position:
               chr21:27863754-27863282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 36
               

               Conread position:
               1-461
               

               Cow position:
               chr21:33983045-33982577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 30
               

               Conread position:
               1-461
               

               Cow position:
               chr21:42500796-42501289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 40
               

               Conread position:
               1-461
               

               Cow position:
               chr21:44826110-44825638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 8
               

               Conread position:
               1-461
               

               Cow position:
               chr21:45971393-45970942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 33
               

               Conread position:
               1-461
               

               Cow position:
               chr21:46777208-46776760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 30
               

               Conread position:
               1-461
               

               Cow position:
               chr21:47760542-47761008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 30
               

               Conread position:
               1-461
               

               Cow position:
               chr21:49700271-49699800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 21
               

               Conread position:
               2-168
               

               Cow position:
               chr21:37122287-37122122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               117, 38
               

               Conread position:
               2-370
               

               Cow position:
               chr21:34391204-34390826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 35
               

               Conread position:
               2-418
               

               Cow position:
               chr21:7582139-7581708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 28
               

               Conread position:
               2-461
               

               Cow position:
               chr21:3585590-3585127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 40
               

               Conread position:
               2-461
               

               Cow position:
               chr21:38900539-38901000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 38
               

               Conread position:
               2-461
               

               Cow position:
               chr21:41974613-41974130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 29
               

               Conread position:
               3-224
               

               Cow position:
               chr21:31159021-31159246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               184
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               68, 28
               

               Conread position:
               3-361
               

               Cow position:
               chr21:44515032-44515404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 37
               

               Conread position:
               3-389
               

               Cow position:
               chr21:30990501-30990119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 37
               

               Conread position:
               3-397
               

               Cow position:
               chr21:42348911-42348520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 37
               

               Conread position:
               3-438
               

               Cow position:
               chr21:17511543-17511996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 28
               

               Conread position:
               3-450
               

               Cow position:
               chr21:23606441-23606897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               321
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               118, 28
               

               Conread position:
               3-461
               

               Cow position:
               chr21:22719013-22718546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 24
               

               Conread position:
               5-224
               

               Cow position:
               chr21:42913977-42913762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               176
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               115, 26
               

               Conread position:
               5-253
               

               Cow position:
               chr21:48484671-48484415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               117, 26
               

               Conread position:
               5-337
               

               Cow position:
               chr21:24607154-24607502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 26
               

               Conread position:
               5-344
               

               Cow position:
               chr21:5636952-5636597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               117, 33
               

               Conread position:
               5-383
               

               Cow position:
               chr21:33729202-33729592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 37
               

               Conread position:
               5-390
               

               Cow position:
               chr21:38120872-38121270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 41
               

               Conread position:
               5-405
               

               Cow position:
               chr21:26648235-26647832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 32
               

               Conread position:
               5-421
               

               Cow position:
               chr21:13128325-13127899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 26
               

               Conread position:
               5-421
               

               Cow position:
               chr21:39401369-39401794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               313
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               116, 26
               

               Conread position:
               5-435
               

               Cow position:
               chr21:37299234-37299676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 26
               

               Conread position:
               5-451
               

               Cow position:
               chr21:34738367-34738802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 36
               

               Conread position:
               5-457
               

               Cow position:
               chr21:44252059-44251607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 36
               

               Conread position:
               5-459
               

               Cow position:
               chr21:28734143-28733676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 37
               

               Conread position:
               5-460
               

               Cow position:
               chr21:32297733-32297272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               326
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               115, 26
               

               Conread position:
               5-461
               

               Cow position:
               chr21:24222772-24222280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               326
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               122, 18
               

               Conread position:
               5-461
               

               Cow position:
               chr21:39888975-39888489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               342
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               115, 26
               

               Conread position:
               5-461
               

               Cow position:
               chr21:45151862-45151388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 229
               

               Conread position:
               6-313
               

               Cow position:
               chr21:47802492-47802167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 31
               

               Conread position:
               6-369
               

               Cow position:
               chr21:43357491-43357108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               286
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               116, 31
               

               Conread position:
               7-206
               

               Cow position:
               chr21:20162306-20162503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               113, 24
               

               Conread position:
               7-339
               

               Cow position:
               chr21:20262563-20262217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               113, 24
               

               Conread position:
               11-218
               

               Cow position:
               chr21:2679316-2679533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               14, 193
               

               Conread position:
               12-461
               

               Cow position:
               chr21:6833828-6834287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 26
               

               Conread position:
               12-461
               

               Cow position:
               chr21:41155638-41156108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 19
               

               Conread position:
               13-218
               

               Cow position:
               chr21:912191-911990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               109, 18
               

               Conread position:
               13-458
               

               Cow position:
               chr21:46849346-46848899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 25
               

               Conread position:
               14-461
               

               Cow position:
               chr21:24797473-24797892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 17
               

               Conread position:
               15-460
               

               Cow position:
               chr21:13048417-13047954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               314
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               106, 16
               

               Conread position:
               22-440
               

               Cow position:
               chr21:45330156-45329738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               310
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               154, 21
               

               Conread position:
               23-458
               

               Cow position:
               chr21:30849160-30848714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 82
               

               Conread position:
               26-461
               

               Cow position:
               chr21:9310827-9311292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               313
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               48, 254
               

               Conread position:
               41-422
               

               Cow position:
               chr21:28923924-28924309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 57
               

               Conread position:
               42-395
               

               Cow position:
               chr21:37345305-37344927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 238
               

               Conread position:
               42-461
               

               Cow position:
               chr21:10005087-10004646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 312
               

               Conread position:
               44-231
               

               Cow position:
               chr21:18494769-18494958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               76, 8
               

               Conread position:
               44-450
               

               Cow position:
               chr21:17643169-17642763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 43
               

               Conread position:
               45-414
               

               Cow position:
               chr21:27341794-27341402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 292
               

               Conread position:
               45-461
               

               Cow position:
               chr21:7709968-7710398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 102
               

               Conread position:
               46-215
               

               Cow position:
               chr21:35897289-35897456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               6, 17
               

               Conread position:
               46-223
               

               Cow position:
               chr21:38449648-38449465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               76, 122
               

               Conread position:
               46-225
               

               Cow position:
               chr21:31676302-31676483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               148
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               127, 76
               

               Conread position:
               46-256
               

               Cow position:
               chr21:31691281-31691497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               31, 145
               

               Conread position:
               46-326
               

               Cow position:
               chr21:28881946-28882244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               222
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               46-343
               

               Cow position:
               chr21:10727085-10727399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               74, 33
               

               Conread position:
               46-389
               

               Cow position:
               chr21:32237101-32237447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 120
               

               Conread position:
               46-396
               

               Cow position:
               chr21:42414298-42413922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 30
               

               Conread position:
               46-398
               

               Cow position:
               chr21:33263651-33264022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 153
               

               Conread position:
               46-422
               

               Cow position:
               chr21:40168804-40168425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               256
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               59, 31
               

               Conread position:
               46-441
               

               Cow position:
               chr21:8549485-8549900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 16
               

               Conread position:
               46-449
               

               Cow position:
               chr21:13089678-13089240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 105
               

               Conread position:
               46-458
               

               Cow position:
               chr21:25127412-25127841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 39
               

               Conread position:
               46-459
               

               Cow position:
               chr21:23586680-23587107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 355
               

               Conread position:
               46-459
               

               Cow position:
               chr21:24296959-24296530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 5
               

               Conread position:
               46-460
               

               Cow position:
               chr21:13303623-13304031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 93
               

               Conread position:
               46-460
               

               Cow position:
               chr21:19958030-19958452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               288
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               71, 35
               

               Conread position:
               46-460
               

               Cow position:
               chr21:29015088-29014681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 117
               

               Conread position:
               46-461
               

               Cow position:
               chr21:937853-938258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 30
               

               Conread position:
               46-461
               

               Cow position:
               chr21:3361210-3360779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 24
               

               Conread position:
               46-461
               

               Cow position:
               chr21:4282064-4281646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 100
               

               Conread position:
               46-461
               

               Cow position:
               chr21:14760384-14760794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 258
               

               Conread position:
               46-461
               

               Cow position:
               chr21:19083796-19083348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               310
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               74, 23
               

               Conread position:
               46-461
               

               Cow position:
               chr21:23535517-23535950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 83
               

               Conread position:
               46-461
               

               Cow position:
               chr21:27521521-27521104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 31
               

               Conread position:
               46-461
               

               Cow position:
               chr21:30231899-30231459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 345
               

               Conread position:
               46-461
               

               Cow position:
               chr21:38918019-38918439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 30
               

               Conread position:
               46-461
               

               Cow position:
               chr21:41579555-41579992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 31
               

               Conread position:
               46-461
               

               Cow position:
               chr21:41620923-41621365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               47-218
               

               Cow position:
               chr21:13585253-13585092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               73, 31
               

               Conread position:
               47-224
               

               Cow position:
               chr21:41957369-41957193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               76, 86
               

               Conread position:
               47-224
               

               Cow position:
               chr21:42135819-42135637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               73, 154
               

               Conread position:
               47-244
               

               Cow position:
               chr21:2785973-2785772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               7, 35
               

               Conread position:
               47-301
               

               Cow position:
               chr21:24765089-24765362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               68, 29
               

               Conread position:
               47-391
               

               Cow position:
               chr21:28955327-28955671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               251
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               73, 85
               

               Conread position:
               47-393
               

               Cow position:
               chr21:3253971-3254323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               69, 49
               

               Conread position:
               47-396
               

               Cow position:
               chr21:21077134-21077484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               21, 67
               

               Conread position:
               47-397
               

               Cow position:
               chr21:31662265-31662643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               262
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               47-419
               

               Cow position:
               chr21:5392737-5392335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               282
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               75, 29
               

               Conread position:
               47-421
               

               Cow position:
               chr21:29484789-29485178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 29
               

               Conread position:
               47-421
               

               Cow position:
               chr21:42384310-42384709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 234
               

               Conread position:
               47-425
               

               Cow position:
               chr21:18780165-18779774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 23
               

               Conread position:
               47-434
               

               Cow position:
               chr21:3818021-3818423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 219
               

               Conread position:
               47-450
               

               Cow position:
               chr21:19258631-19259042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 152
               

               Conread position:
               47-453
               

               Cow position:
               chr21:15584598-15584192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 30
               

               Conread position:
               47-458
               

               Cow position:
               chr21:11645164-11644732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 383
               

               Conread position:
               47-460
               

               Cow position:
               chr21:14464382-14464822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 32
               

               Conread position:
               47-461
               

               Cow position:
               chr21:6051311-6051741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 206
               

               Conread position:
               47-461
               

               Cow position:
               chr21:8351499-8351057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 45
               

               Conread position:
               47-461
               

               Cow position:
               chr21:18318531-18318950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 153
               

               Conread position:
               47-461
               

               Cow position:
               chr21:23568013-23568462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 219
               

               Conread position:
               48-210
               

               Cow position:
               chr21:12616945-12617106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               72, 100
               

               Conread position:
               48-321
               

               Cow position:
               chr21:31277627-31277910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               73, 55
               

               Conread position:
               48-396
               

               Cow position:
               chr21:1591357-1591722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 29
               

               Conread position:
               48-458
               

               Cow position:
               chr21:12981931-12981503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               276
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               118, 73
               

               Conread position:
               48-460
               

               Cow position:
               chr21:22860808-22861228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               304
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               74, 28
               

               Conread position:
               48-460
               

               Cow position:
               chr21:42841785-42841349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 27
               

               Conread position:
               48-461
               

               Cow position:
               chr21:31253341-31253770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 156
               

               Conread position:
               49-371
               

               Cow position:
               chr21:37282116-37282450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               73, 148
               

               Conread position:
               50-397
               

               Cow position:
               chr21:5426754-5427113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 24
               

               Conread position:
               51-218
               

               Cow position:
               chr21:9334450-9334283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               71, 92
               

               Conread position:
               51-218
               

               Cow position:
               chr21:17302567-17302402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               70, 51
               

               Conread position:
               51-224
               

               Cow position:
               chr21:40065506-40065331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               20, 73
               

               Conread position:
               51-256
               

               Cow position:
               chr21:28443570-28443361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               22, 150
               

               Conread position:
               51-354
               

               Cow position:
               chr21:10601559-10601242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               240
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               66, 25
               

               Conread position:
               51-358
               

               Cow position:
               chr21:38867763-38867450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               239
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               66, 25
               

               Conread position:
               51-397
               

               Cow position:
               chr21:8206599-8206946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 74
               

               Conread position:
               51-416
               

               Cow position:
               chr21:41597624-41598006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               51-421
               

               Cow position:
               chr21:13163702-13164059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 29
               

               Conread position:
               51-457
               

               Cow position:
               chr21:3763928-3763515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 14
               

               Conread position:
               51-461
               

               Cow position:
               chr21:5898590-5898171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 125
               

               Conread position:
               52-397
               

               Cow position:
               chr21:13365151-13365518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 121
               

               Conread position:
               52-407
               

               Cow position:
               chr21:395686-396053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 24
               

               Conread position:
               52-461
               

               Cow position:
               chr21:33531-33970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 113
               

               Conread position:
               53-223
               

               Cow position:
               chr21:2927392-2927219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               67, 31
               

               Conread position:
               53-341
               

               Cow position:
               chr21:3813672-3813370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 283
               

               Conread position:
               53-378
               

               Cow position:
               chr21:5566800-5567143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 286
               

               Conread position:
               53-382
               

               Cow position:
               chr21:45330797-45330445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               257
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               67, 288
               

               Conread position:
               53-390
               

               Cow position:
               chr21:45915893-45915549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               246
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               69, 42
               

               Conread position:
               53-440
               

               Cow position:
               chr21:14452041-14452453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 24
               

               Conread position:
               53-450
               

               Cow position:
               chr21:47764301-47763891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 26
               

               Conread position:
               53-461
               

               Cow position:
               chr21:17193949-17193511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 373
               

               Conread position:
               54-224
               

               Cow position:
               chr21:1464040-1464214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               54-300
               

               Cow position:
               chr21:9862813-9862563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               63, 129
               

               Conread position:
               54-318
               

               Cow position:
               chr21:6102457-6102164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               22, 132
               

               Conread position:
               54-461
               

               Cow position:
               chr21:40589671-40589243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 375
               

               Conread position:
               55-218
               

               Cow position:
               chr21:9998908-9998740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               5, 23
               

               Conread position:
               55-231
               

               Cow position:
               chr21:18845202-18845026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               65, 48
               

               Conread position:
               55-460
               

               Cow position:
               chr21:37706594-37706176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 80
               

               Conread position:
               55-461
               

               Cow position:
               chr21:28027616-28028036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 177
               

               Conread position:
               57-370
               

               Cow position:
               chr21:30607273-30606937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               58-224
               

               Cow position:
               chr21:37361654-37361493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               19, 90
               

               Conread position:
               59-457
               

               Cow position:
               chr21:39664572-39664162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 202
               

               Conread position:
               59-461
               

               Cow position:
               chr21:30592485-30592077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               285
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               61, 7
               

               Conread position:
               60-390
               

               Cow position:
               chr21:15911218-15911569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 83
               

               Conread position:
               61-231
               

               Cow position:
               chr21:39450349-39450174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               60, 16
               

               Conread position:
               61-440
               

               Cow position:
               chr21:9990333-9990727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 45
               

               Conread position:
               61-460
               

               Cow position:
               chr21:802475-802087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 74
               

               Conread position:
               62-461
               

               Cow position:
               chr21:17183741-17184155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 36
               

               Conread position:
               63-460
               

               Cow position:
               chr21:29979935-29979536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 88
               

               Conread position:
               64-411
               

               Cow position:
               chr21:8235722-8235374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               257
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               58, 12
               

               Conread position:
               64-440
               

               Cow position:
               chr21:27146172-27145772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 314
               

               Conread position:
               65-376
               

               Cow position:
               chr21:35897803-35897471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 87
               

               Conread position:
               65-421
               

               Cow position:
               chr21:18790733-18790366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 74
               

               Conread position:
               67-224
               

               Cow position:
               chr21:22194286-22194129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               54, 76
               

               Conread position:
               67-397
               

               Cow position:
               chr21:28989440-28989789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               252
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               54, 19
               

               Conread position:
               67-461
               

               Cow position:
               chr21:32339912-32339508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 68
               

               Conread position:
               68-452
               

               Cow position:
               chr21:47495831-47495423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               271
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               55, 206
               

               Conread position:
               69-224
               

               Cow position:
               chr21:10608629-10608469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               70-396
               

               Cow position:
               chr21:44861248-44860944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               50, 70
               

               Conread position:
               70-439
               

               Cow position:
               chr21:21169667-21169278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 98
               

               Conread position:
               71-457
               

               Cow position:
               chr21:29214320-29213922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 77
               

               Conread position:
               72-447
               

               Cow position:
               chr21:712764-713167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 399
               

               Conread position:
               74-409
               

               Cow position:
               chr21:10000912-10001263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 96
               

               Conread position:
               76-337
               

               Cow position:
               chr21:6765714-6765977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               46, 78
               

               Conread position:
               76-461
               

               Cow position:
               chr21:28244310-28244704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 9
               

               Conread position:
               78-461
               

               Cow position:
               chr21:10114493-10114096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 257
               

               Conread position:
               81-233
               

               Cow position:
               chr21:19407743-19407592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               110, 10
               

               Conread position:
               81-397
               

               Cow position:
               chr21:27624551-27624874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 22
               

               Conread position:
               83-370
               

               Cow position:
               chr21:43631362-43631071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 116
               

               Conread position:
               84-461
               

               Cow position:
               chr21:13840164-13840565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 285
               

               Conread position:
               85-418
               

               Cow position:
               chr21:18800686-18800337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               35, 316
               

               Conread position:
               86-398
               

               Cow position:
               chr21:45921215-45920882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               36, 320
               

               Conread position:
               87-421
               

               Cow position:
               chr21:10633796-10633441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 257
               

               Conread position:
               87-461
               

               Cow position:
               chr21:16083236-16082875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               34, 74
               

               Conread position:
               88-419
               

               Cow position:
               chr21:24642364-24642714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               265
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               17, 48
               

               Conread position:
               90-432
               

               Cow position:
               chr21:11456962-11456591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               30, 58
               

               Conread position:
               91-460
               

               Cow position:
               chr21:12749376-12749000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 138
               

               Conread position:
               97-397
               

               Cow position:
               chr21:12301641-12301335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               220
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               108, 17
               

               Conread position:
               97-421
               

               Cow position:
               chr21:11359892-11360226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               253
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               25, 147
               

               Conread position:
               97-461
               

               Cow position:
               chr21:957521-957906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 244
               

               Conread position:
               98-461
               

               Cow position:
               chr21:7825320-7824953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               22, 63
               

               Conread position:
               99-450
               

               Cow position:
               chr21:42007603-42007233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               260
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               23, 217
               

               Conread position:
               103-395
               

               Cow position:
               chr21:6387892-6388173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               59, 20
               

               Conread position:
               103-420
               

               Cow position:
               chr21:19673675-19674005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               225
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               18, 239
               

               Conread position:
               103-461
               

               Cow position:
               chr21:17637759-17638132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               255
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               104-461
               

               Cow position:
               chr21:12462109-12461732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 321
               

               Conread position:
               106-459
               

               Cow position:
               chr21:29978899-29978528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 326
               

               Conread position:
               107-461
               

               Cow position:
               chr21:30222207-30222579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               259
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               42, 321
               

               Conread position:
               115-461
               

               Cow position:
               chr21:30835247-30835603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 23
               

               Conread position:
               118-384
               

               Cow position:
               chr21:36789670-36789959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               219
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               119-386
               

               Cow position:
               chr21:2810266-2809997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               96, 23
               

               Conread position:
               120-453
               

               Cow position:
               chr21:34663504-34663850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               232
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               46, 73
               

               Conread position:
               124-461
               

               Cow position:
               chr21:10561697-10561348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               255
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               49, 21
               

               Conread position:
               127-322
               

               Cow position:
               chr21:8438922-8438723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               53, 67
               

               Conread position:
               129-461
               

               Cow position:
               chr21:20032948-20032595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               233
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               50, 66
               

               Conread position:
               129-461
               

               Cow position:
               chr21:27810296-27810629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 65
               

               Conread position:
               130-461
               

               Cow position:
               chr21:7785118-7785457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               223
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               132-452
               

               Cow position:
               chr21:10261172-10261501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               25, 66
               

               Conread position:
               133-397
               

               Cow position:
               chr21:10673023-10673297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               134-461
               

               Cow position:
               chr21:23980289-23979942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 141
               

               Conread position:
               134-461
               

               Cow position:
               chr21:27712322-27711997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 99
               

               Conread position:
               135-461
               

               Cow position:
               chr21:16914669-16915018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               253
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               42, 60
               

               Conread position:
               142-461
               

               Cow position:
               chr21:19067433-19067770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               49, 8
               

               Conread position:
               142-461
               

               Cow position:
               chr21:38728066-38728393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               231
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               35, 15
               

               Conread position:
               143-421
               

               Cow position:
               chr21:30250288-30250004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               30, 51
               

               Conread position:
               145-461
               

               Cow position:
               chr21:22121426-22121739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               28, 51
               

               Conread position:
               146-421
               

               Cow position:
               chr21:10538326-10538055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 16
               

               Conread position:
               147-379
               

               Cow position:
               chr21:8527571-8527326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               26, 123
               

               Conread position:
               148-461
               

               Cow position:
               chr21:40571518-40571234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               151-457
               

               Cow position:
               chr21:30218273-30217982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               22, 172
               

               Conread position:
               153-397
               

               Cow position:
               chr21:40769221-40769469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               159-461
               

               Cow position:
               chr21:41107844-41107539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               238
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               14, 36
               

               Conread position:
               160-461
               

               Cow position:
               chr21:10858735-10859047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               215
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               13, 69
               

               Conread position:
               161-460
               

               Cow position:
               chr21:11779594-11779302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               38, 17
               

               Conread position:
               162-395
               

               Cow position:
               chr21:7823298-7823538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 67
               

               Conread position:
               174-460
               

               Cow position:
               chr21:10979006-10978711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               52, 22
               

               Conread position:
               175-461
               

               Cow position:
               chr21:44829809-44829519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 91
               

               Conread position:
               178-460
               

               Cow position:
               chr21:8546052-8545784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               182-395
               

               Cow position:
               chr21:38268098-38267888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               42, 54
               

               Conread position:
               183-461
               

               Cow position:
               chr21:8950141-8950430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               184-459
               

               Cow position:
               chr21:16152397-16152675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 230
               

               Conread position:
               184-460
               

               Cow position:
               chr21:22850890-22851151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               208, 25
               

               Conread position:
               184-461
               

               Cow position:
               chr21:22856182-22856457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               38, 115
               

               Conread position:
               185-461
               

               Cow position:
               chr21:9504829-9505106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               63, 41
               

               Conread position:
               185-461
               

               Cow position:
               chr21:18064951-18064692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               34, 90
               

               Conread position:
               186-452
               

               Cow position:
               chr21:40786641-40786908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               22, 58
               

               Conread position:
               188-461
               

               Cow position:
               chr21:6317715-6317448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               198
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               20, 77
               

               Conread position:
               190-460
               

               Cow position:
               chr21:20165608-20165876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               17, 69
               

               Conread position:
               190-461
               

               Cow position:
               chr21:15545395-15545125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               30, 62
               

               Conread position:
               193-318
               

               Cow position:
               chr21:22720197-22720325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               193-400
               

               Cow position:
               chr21:36909905-36910110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               163
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               14, 62
               

               Conread position:
               193-409
               

               Cow position:
               chr21:13395568-13395786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               26, 6
               

               Conread position:
               193-453
               

               Cow position:
               chr21:10410190-10410452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 84
               

               Conread position:
               193-459
               

               Cow position:
               chr21:47363768-47363489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               210
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               9, 255
               

               Conread position:
               193-461
               

               Cow position:
               chr21:28919554-28919294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 160
               

               Conread position:
               193-461
               

               Cow position:
               chr21:40266094-40266361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 111
               

               Conread position:
               193-461
               

               Cow position:
               chr21:41140747-41140478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 65
               

               Conread position:
               194-453
               

               Cow position:
               chr21:15544249-15544008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               12, 65
               

               Conread position:
               195-348
               

               Cow position:
               chr21:9302457-9302299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               8, 73
               

               Conread position:
               195-453
               

               Cow position:
               chr21:26018357-26018610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               70, 20
               

               Conread position:
               199-459
               

               Cow position:
               chr21:742262-742509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               23, 105
               

               Conread position:
               199-460
               

               Cow position:
               chr21:47714028-47713771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 54
               

               Conread position:
               199-461
               

               Cow position:
               chr21:18568662-18568400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 5
               

               Conread position:
               204-302
               

               Cow position:
               chr21:37496190-37496092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               84
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               18, 51
               

               Conread position:
               204-347
               

               Cow position:
               chr21:33360051-33359917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               15, 42
               

               Conread position:
               204-378
               

               Cow position:
               chr21:20418702-20418525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               204-397
               

               Cow position:
               chr21:33414103-33413912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               15, 24
               

               Conread position:
               204-416
               

               Cow position:
               chr21:27429441-27429646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               57, 29
               

               Conread position:
               204-421
               

               Cow position:
               chr21:734578-734789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               16, 56
               

               Conread position:
               204-448
               

               Cow position:
               chr21:34151566-34151804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               190
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               16, 119
               

               Conread position:
               204-453
               

               Cow position:
               chr21:13713858-13713604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               18, 45
               

               Conread position:
               204-458
               

               Cow position:
               chr21:7394364-7394603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               18, 111
               

               Conread position:
               204-459
               

               Cow position:
               chr21:38720234-38720484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               193
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               15, 69
               

               Conread position:
               204-460
               

               Cow position:
               chr21:7377945-7377687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               204-460
               

               Cow position:
               chr21:17875209-17874954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               15, 47
               

               Conread position:
               204-461
               

               Cow position:
               chr21:641568-641821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               15, 200
               

               Conread position:
               204-461
               

               Cow position:
               chr21:868943-868682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 30
               

               Conread position:
               204-461
               

               Cow position:
               chr21:1511273-1511523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               196
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               15, 114
               

               Conread position:
               204-461
               

               Cow position:
               chr21:8426428-8426680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               21, 68
               

               Conread position:
               204-461
               

               Cow position:
               chr21:10883942-10883681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               204-461
               

               Cow position:
               chr21:13585072-13584815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               200
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               15, 48
               

               Conread position:
               204-461
               

               Cow position:
               chr21:13656653-13656397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               15, 42
               

               Conread position:
               204-461
               

               Cow position:
               chr21:20152936-20153194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 172
               

               Conread position:
               204-461
               

               Cow position:
               chr21:21907447-21907205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               198
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               15, 90
               

               Conread position:
               211-461
               

               Cow position:
               chr21:44724376-44724139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 41
               

               Conread position:
               212-461
               

               Cow position:
               chr21:47029-47284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               212-461
               

               Cow position:
               chr21:28237722-28237462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               195
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               8, 99
               

               Conread position:
               213-461
               

               Cow position:
               chr21:71577-71823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               45, 153
               

               Conread position:
               215-459
               

               Cow position:
               chr21:17403855-17403612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               18, 31
               

               Conread position:
               218-339
               

               Cow position:
               chr21:37014405-37014288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               218-373
               

               Cow position:
               chr21:29405218-29405069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               218-416
               

               Cow position:
               chr21:46132572-46132770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               180, 33
               

               Conread position:
               218-421
               

               Cow position:
               chr21:43259220-43259415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               163, 15
               

               Conread position:
               218-431
               

               Cow position:
               chr21:31159400-31159605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               173
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               134, 40
               

               Conread position:
               218-453
               

               Cow position:
               chr21:14126284-14126501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               218-460
               

               Cow position:
               chr21:18059961-18059723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               218-461
               

               Cow position:
               chr21:829215-828973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               38, 154
               

               Conread position:
               218-461
               

               Cow position:
               chr21:6997937-6998178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 191
               

               Conread position:
               218-461
               

               Cow position:
               chr21:7169683-7169924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               45, 196
               

               Conread position:
               218-461
               

               Cow position:
               chr21:10657105-10656864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               42, 27
               

               Conread position:
               218-461
               

               Cow position:
               chr21:21686414-21686654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               29, 96
               

               Conread position:
               218-461
               

               Cow position:
               chr21:40432447-40432701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               154, 13
               

               Conread position:
               221-347
               

               Cow position:
               chr21:38664636-38664765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               221-362
               

               Cow position:
               chr21:11250879-11251010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               113
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               221-367
               

               Cow position:
               chr21:46143958-46144105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               38, 24
               

               Conread position:
               221-386
               

               Cow position:
               chr21:13036900-13036741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               221-397
               

               Cow position:
               chr21:471677-471850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               221-421
               

               Cow position:
               chr21:19513865-19514052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               65, 49
               

               Conread position:
               221-421
               

               Cow position:
               chr21:30256270-30256074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               158
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               36, 114
               

               Conread position:
               221-449
               

               Cow position:
               chr21:34049879-34049661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               21, 14
               

               Conread position:
               221-450
               

               Cow position:
               chr21:7768434-7768661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               181
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               26, 185
               

               Conread position:
               221-452
               

               Cow position:
               chr21:6017619-6017855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               23, 161
               

               Conread position:
               221-453
               

               Cow position:
               chr21:10009819-10009585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               81, 46
               

               Conread position:
               221-457
               

               Cow position:
               chr21:8349328-8349558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               31, 102
               

               Conread position:
               221-457
               

               Cow position:
               chr21:8431102-8430864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 23
               

               Conread position:
               221-457
               

               Cow position:
               chr21:36508241-36508466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               221-457
               

               Cow position:
               chr21:36696090-36695854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               32, 41
               

               Conread position:
               221-458
               

               Cow position:
               chr21:17455386-17455619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               221-458
               

               Cow position:
               chr21:22210244-22210009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               192, 40
               

               Conread position:
               221-460
               

               Cow position:
               chr21:1764864-1764622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               143, 34
               

               Conread position:
               221-461
               

               Cow position:
               chr21:6624160-6624396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               221-461
               

               Cow position:
               chr21:9036299-9036538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               40, 187
               

               Conread position:
               221-461
               

               Cow position:
               chr21:11027353-11027121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               221-461
               

               Cow position:
               chr21:12739079-12739325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 143
               

               Conread position:
               221-461
               

               Cow position:
               chr21:13588762-13588999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 96
               

               Conread position:
               221-461
               

               Cow position:
               chr21:13842488-13842730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               221-461
               

               Cow position:
               chr21:16604318-16604077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               28, 172
               

               Conread position:
               221-461
               

               Cow position:
               chr21:17890303-17890540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               221-461
               

               Cow position:
               chr21:26563159-26562922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               133, 24
               

               Conread position:
               221-461
               

               Cow position:
               chr21:37790000-37789765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               37, 24
               

               Conread position:
               221-461
               

               Cow position:
               chr21:41918246-41918002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               192
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               33, 119
               

               Conread position:
               222-377
               

               Cow position:
               chr21:20044767-20044608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               222-440
               

               Cow position:
               chr21:977142-976924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               142, 32
               

               Conread position:
               222-461
               

               Cow position:
               chr21:32393049-32392825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               176, 23
               

               Conread position:
               223-370
               

               Cow position:
               chr21:17929836-17929688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               223-458
               

               Cow position:
               chr21:12916419-12916184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               27, 36
               

               Conread position:
               224-390
               

               Cow position:
               chr21:12104367-12104535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               224-453
               

               Cow position:
               chr21:41522404-41522179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               155, 21
               

               Conread position:
               224-461
               

               Cow position:
               chr21:9301216-9301462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               9, 189
               

               Conread position:
               224-461
               

               Cow position:
               chr21:10147994-10148236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               80, 182
               

               Conread position:
               224-461
               

               Cow position:
               chr21:41287792-41287559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               180
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               30, 182
               

               Conread position:
               225-400
               

               Cow position:
               chr21:41828162-41827979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               77, 30
               

               Conread position:
               228-459
               

               Cow position:
               chr21:19561560-19561329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               228-460
               

               Cow position:
               chr21:13580420-13580651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               160, 0
               

               Conread position:
               228-460
               

               Cow position:
               chr21:29658286-29658510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               182
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               151, 17
               

               Conread position:
               229-457
               

               Cow position:
               chr21:39319406-39319174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               229-461
               

               Cow position:
               chr21:9477175-9477401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               231-408
               

               Cow position:
               chr21:7583856-7584037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               231-421
               

               Cow position:
               chr21:19360167-19359976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               232-460
               

               Cow position:
               chr21:31652403-31652623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               232-461
               

               Cow position:
               chr21:2550231-2550463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               232-461
               

               Cow position:
               chr21:11353073-11353300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               40, 60
               

               Conread position:
               232-461
               

               Cow position:
               chr21:13889636-13889417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               13, 100
               

               Conread position:
               232-461
               

               Cow position:
               chr21:16793800-16794031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               30, 19
               

               Conread position:
               233-439
               

               Cow position:
               chr21:10980371-10980574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               5, 19
               

               Conread position:
               234-461
               

               Cow position:
               chr21:11625759-11625983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               237-416
               

               Cow position:
               chr21:8213264-8213086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               26, 83
               

               Conread position:
               237-457
               

               Cow position:
               chr21:23573355-23573570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               39, 22
               

               Conread position:
               239-461
               

               Cow position:
               chr21:8241931-8242152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               241-421
               

               Cow position:
               chr21:17265981-17265800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               108, 141
               

               Conread position:
               242-457
               

               Cow position:
               chr21:31279279-31279486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               242-461
               

               Cow position:
               chr21:10817051-10817271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               242-461
               

               Cow position:
               chr21:28907523-28907312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               22, 9
               

               Conread position:
               243-460
               

               Cow position:
               chr21:20213757-20213535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 153
               

               Conread position:
               243-461
               

               Cow position:
               chr21:19702755-19702967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               43, 12
               

               Conread position:
               244-457
               

               Cow position:
               chr21:21615805-21616012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               169, 0
               

               Conread position:
               244-461
               

               Cow position:
               chr21:10072181-10072403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               46, 11
               

               Conread position:
               244-461
               

               Cow position:
               chr21:42144850-42145056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               245-421
               

               Cow position:
               chr21:46470212-46470383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               245-460
               

               Cow position:
               chr21:6851196-6851401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               245-461
               

               Cow position:
               chr21:2292978-2292760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               10, 69
               

               Conread position:
               245-461
               

               Cow position:
               chr21:17983004-17983209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               170
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               246-460
               

               Cow position:
               chr21:36177185-36177395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               246-461
               

               Cow position:
               chr21:9278548-9278765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               246-461
               

               Cow position:
               chr21:11174262-11174481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               247-460
               

               Cow position:
               chr21:42328638-42328425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               161, 11
               

               Conread position:
               247-461
               

               Cow position:
               chr21:40291720-40291512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               250-445
               

               Cow position:
               chr21:22313463-22313658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               136, 74
               

               Conread position:
               250-451
               

               Cow position:
               chr21:13462743-13462949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               54, 200
               

               Conread position:
               250-453
               

               Cow position:
               chr21:40551711-40551511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               80, 21
               

               Conread position:
               250-461
               

               Cow position:
               chr21:17416263-17416053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               57, 114
               

               Conread position:
               250-461
               

               Cow position:
               chr21:17519048-17519265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               251-461
               

               Cow position:
               chr21:17252948-17252740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               251-461
               

               Cow position:
               chr21:20163738-20163944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               251-461
               

               Cow position:
               chr21:46809742-46809527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 188
               

               Conread position:
               252-460
               

               Cow position:
               chr21:12310509-12310709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               252-460
               

               Cow position:
               chr21:12322534-12322734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               252-461
               

               Cow position:
               chr21:9819494-9819290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               252-461
               

               Cow position:
               chr21:16498550-16498752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               252-461
               

               Cow position:
               chr21:18493341-18493129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               52, 146
               

               Conread position:
               252-461
               

               Cow position:
               chr21:26391955-26392164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               252-461
               

               Cow position:
               chr21:31760182-31759989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               252-461
               

               Cow position:
               chr21:40475531-40475738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               253-383
               

               Cow position:
               chr21:14441869-14441999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               99
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               253-421
               

               Cow position:
               chr21:36682357-36682525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               253-436
               

               Cow position:
               chr21:43692850-43693037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               84, 5
               

               Conread position:
               253-461
               

               Cow position:
               chr21:18471610-18471811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               253-461
               

               Cow position:
               chr21:36763095-36763299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 5
               

               Conread position:
               254-451
               

               Cow position:
               chr21:11755733-11755535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               21, 155
               

               Conread position:
               254-461
               

               Cow position:
               chr21:7066348-7066148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               127, 66
               

               Conread position:
               254-461
               

               Cow position:
               chr21:24061158-24060954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               149, 50
               

               Conread position:
               254-461
               

               Cow position:
               chr21:24266532-24266324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               168
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 16
               

               Conread position:
               255-386
               

               Cow position:
               chr21:8231643-8231513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               255-394
               

               Cow position:
               chr21:12207768-12207629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               255-397
               

               Cow position:
               chr21:44592175-44592033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               255-403
               

               Cow position:
               chr21:27081080-27081226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               129, 65
               

               Conread position:
               255-413
               

               Cow position:
               chr21:46612760-46612603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               151, 66
               

               Conread position:
               255-420
               

               Cow position:
               chr21:30119728-30119893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               255-458
               

               Cow position:
               chr21:20318547-20318754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               143, 65
               

               Conread position:
               255-459
               

               Cow position:
               chr21:15271413-15271202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               37, 153
               

               Conread position:
               255-460
               

               Cow position:
               chr21:13944081-13943881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               255-461
               

               Cow position:
               chr21:6584104-6583903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               6, 20
               

               Conread position:
               255-461
               

               Cow position:
               chr21:8713925-8713720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               159
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               255-461
               

               Cow position:
               chr21:10130178-10130384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               255-461
               

               Cow position:
               chr21:37835612-37835823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               46, 86
               

               Conread position:
               256-461
               

               Cow position:
               chr21:41043284-41043080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               257-461
               

               Cow position:
               chr21:17419046-17418845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               143, 67
               

               Conread position:
               258-414
               

               Cow position:
               chr21:22939804-22939961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               40, 149
               

               Conread position:
               258-459
               

               Cow position:
               chr21:8924401-8924606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               29, 192
               

               Conread position:
               258-460
               

               Cow position:
               chr21:19624437-19624640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               83, 73
               

               Conread position:
               258-460
               

               Cow position:
               chr21:47719262-47719068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               258-461
               

               Cow position:
               chr21:27677519-27677720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 65
               

               Conread position:
               259-457
               

               Cow position:
               chr21:41610205-41610412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               260-405
               

               Cow position:
               chr21:38440298-38440443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               260-459
               

               Cow position:
               chr21:41040983-41041183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               157
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               146, 131
               

               Conread position:
               260-460
               

               Cow position:
               chr21:1562504-1562294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               260-460
               

               Cow position:
               chr21:28191395-28191585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               261-461
               

               Cow position:
               chr21:22005869-22005663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               40, 146
               

               Conread position:
               263-461
               

               Cow position:
               chr21:13674610-13674413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               194, 0
               

               Conread position:
               263-461
               

               Cow position:
               chr21:31246306-31246508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               41, 89
               

               Conread position:
               264-404
               

               Cow position:
               chr21:8687099-8686960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               264-454
               

               Cow position:
               chr21:6736146-6735963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               154
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               264-460
               

               Cow position:
               chr21:11182595-11182785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               11, 120
               

               Conread position:
               264-460
               

               Cow position:
               chr21:13225758-13225953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               156
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               174, 0
               

               Conread position:
               264-461
               

               Cow position:
               chr21:30938629-30938429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               51, 160
               

               Conread position:
               265-458
               

               Cow position:
               chr21:18341262-18341456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               266-460
               

               Cow position:
               chr21:700747-700553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               266-460
               

               Cow position:
               chr21:19248940-19248749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               268-461
               

               Cow position:
               chr21:24875399-24875589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               50, 132
               

               Conread position:
               269-450
               

               Cow position:
               chr21:30243633-30243459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               270-461
               

               Cow position:
               chr21:17155902-17155711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               158, 5
               

               Conread position:
               271-397
               

               Cow position:
               chr21:7493217-7493097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               271-461
               

               Cow position:
               chr21:14360415-14360605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               272-415
               

               Cow position:
               chr21:8978500-8978641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               107
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               272-453
               

               Cow position:
               chr21:13817443-13817622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               272-457
               

               Cow position:
               chr21:3415705-3415889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               272-458
               

               Cow position:
               chr21:37928700-37928885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               152
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               183, 0
               

               Conread position:
               272-461
               

               Cow position:
               chr21:17515859-17516047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               272-461
               

               Cow position:
               chr21:17842946-17842758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               272-461
               

               Cow position:
               chr21:18721054-18720868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               272-461
               

               Cow position:
               chr21:28792457-28792650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               273-460
               

               Cow position:
               chr21:35084545-35084358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               108, 121
               

               Conread position:
               273-461
               

               Cow position:
               chr21:2537087-2536899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               150
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               273-461
               

               Cow position:
               chr21:30145576-30145396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               148, 95
               

               Conread position:
               273-461
               

               Cow position:
               chr21:40820801-40820614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               274-387
               

               Cow position:
               chr21:8430681-8430569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               92
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               274-451
               

               Cow position:
               chr21:12541346-12541170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               274-457
               

               Cow position:
               chr21:3177894-3178081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               25, 131
               

               Conread position:
               274-457
               

               Cow position:
               chr21:19148163-19148349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               128, 97
               

               Conread position:
               274-459
               

               Cow position:
               chr21:25012135-25012313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               274-461
               

               Cow position:
               chr21:8497553-8497366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               275-457
               

               Cow position:
               chr21:15012493-15012667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               276-461
               

               Cow position:
               chr21:42355684-42355878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               277-457
               

               Cow position:
               chr21:4674519-4674699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               23, 75
               

               Conread position:
               277-457
               

               Cow position:
               chr21:6153857-6154036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               277-461
               

               Cow position:
               chr21:19161768-19161952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               277-461
               

               Cow position:
               chr21:31659091-31658917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               278-461
               

               Cow position:
               chr21:13090431-13090614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               278-461
               

               Cow position:
               chr21:26735466-26735634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               37, 0
               
UCSC Genome Browser
               Conread position:
               279-457
               

               Cow position:
               chr21:45683870-45684054 (view  custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               25, 0
               
UCSC Genome Browser
               
               
               
Conread position: 279-461

               
               
               
Cow position: chr21:17531187-17531372 (view  custom track)

               
               
               
Alignm length: 186

               
               
               
Alignm identity: 135

               
               
               
Alignm E-value: 4e-28

               
               
               
Alignm gaps (pig, cow): 108, 0
UCSC Genome Browser
               
               
               
Conread position: 280-460

               
               
               
Cow position: chr21:40059087-40059262 (view  custom track)

               
               
               
Alignm length: 184

               
               
               
Alignm identity: 137

               
               
               
Alignm E-value: 1e-26

               
               
               
Alignm gaps (pig, cow): 23, 121

               
               
               Conread position:280-461
               
               
               Cow position:chr21:48482469-48482293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:282-400
               
               
               Cow position:chr21:41050950-41051067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:282-459
               
               
               Cow position:chr21:31038206-31038023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 79

               
               
               Conread position:282-461
               
               
               Cow position:chr21:8959552-8959730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:282-461
               
               
               Cow position:chr21:13985647-13985826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:282-461
               
               
               Cow position:chr21:21940346-21940174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:283-460
               
               
               Cow position:chr21:745238-745406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:284-461
               
               
               Cow position:chr21:14745833-14746009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:285-461
               
               
               Cow position:chr21:29418636-29418808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:286-457
               
               
               Cow position:chr21:27409667-27409502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:286-458
               
               
               Cow position:chr21:38482448-38482616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:286-461
               
               
               Cow position:chr21:5218767-5218945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 120

               
               
               Conread position:286-461
               
               
               Cow position:chr21:12348830-12349005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:286-461
               
               
               Cow position:chr21:22211318-22211493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:286-461
               
               
               Cow position:chr21:30977192-30977031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 51

               
               
               Conread position:287-450
               
               
               Cow position:chr21:21769150-21769311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:287-460
               
               
               Cow position:chr21:14228836-14228659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:287-461
               
               
               Cow position:chr21:34834014-34833841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):140, 64

               
               
               Conread position:287-461
               
               
               Cow position:chr21:43316829-43316655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:288-409
               
               
               Cow position:chr21:43362097-43362218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:288-450
               
               
               Cow position:chr21:35252514-35252669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:288-461
               
               
               Cow position:chr21:26828904-26828734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:288-461
               
               
               Cow position:chr21:39278234-39278055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:289-396
               
               
               Cow position:chr21:43336674-43336781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:289-461
               
               
               Cow position:chr21:36280358-36280530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:290-449
               
               
               Cow position:chr21:13043951-13043800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:290-457
               
               
               Cow position:chr21:17302572-17302739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:290-461
               
               
               Cow position:chr21:11743435-11743256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:290-461
               
               
               Cow position:chr21:39268870-39269040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:290-461
               
               
               Cow position:chr21:42017534-42017364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:144
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):129, 154

               
               
               Conread position:290-461
               
               
               Cow position:chr21:42189688-42189523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:291-461
               
               
               Cow position:chr21:790243-790070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 32

               
               
               Conread position:291-461
               
               
               Cow position:chr21:6291816-6291986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:291-461
               
               
               Cow position:chr21:14638994-14639163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:291-461
               
               
               Cow position:chr21:15869760-15869924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:291-461
               
               
               Cow position:chr21:36115673-36115844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:292-419
               
               
               Cow position:chr21:42131284-42131157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:292-461
               
               
               Cow position:chr21:646242-646078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:292-461
               
               
               Cow position:chr21:5214419-5214589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:292-461
               
               
               Cow position:chr21:8986093-8986263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 29

               
               
               Conread position:293-457
               
               
               Cow position:chr21:41540864-41540700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:293-461
               
               
               Cow position:chr21:874393-874561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:293-461
               
               
               Cow position:chr21:10587415-10587247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:293-461
               
               
               Cow position:chr21:18578490-18578331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:293-461
               
               
               Cow position:chr21:18783397-18783229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):116, 101

               
               
               Conread position:293-461
               
               
               Cow position:chr21:34737238-34737398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:294-400
               
               
               Cow position:chr21:26658909-26658803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:294-460
               
               
               Cow position:chr21:32648116-32647950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:294-461
               
               
               Cow position:chr21:14247208-14247373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:295-456
               
               
               Cow position:chr21:12640544-12640705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:295-460
               
               
               Cow position:chr21:10138009-10138175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:296-458
               
               
               Cow position:chr21:24350927-24351085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:296-460
               
               
               Cow position:chr21:20193045-20193209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:296-461
               
               
               Cow position:chr21:10751119-10751283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:297-460
               
               
               Cow position:chr21:10576311-10576472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:297-461
               
               
               Cow position:chr21:9341882-9341718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:297-461
               
               
               Cow position:chr21:15305223-15305058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:297-461
               
               
               Cow position:chr21:18449829-18449992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:297-461
               
               
               Cow position:chr21:19826294-19826458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:298-421
               
               
               Cow position:chr21:16928029-16927905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:298-421
               
               
               Cow position:chr21:37361165-37361043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:298-452
               
               
               Cow position:chr21:39681213-39681367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:298-453
               
               
               Cow position:chr21:1283809-1283956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:298-460
               
               
               Cow position:chr21:8506469-8506311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr21:8494717-8494880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr21:8509357-8509198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr21:8882000-8882159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr21:19014801-19014638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr21:26454929-26454765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:299-457
               
               
               Cow position:chr21:16796928-16797088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:299-461
               
               
               Cow position:chr21:7539450-7539288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:300-461
               
               
               Cow position:chr21:30970014-30970172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:301-461
               
               
               Cow position:chr21:20199352-20199191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:303-408
               
               
               Cow position:chr21:28617870-28617975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:303-460
               
               
               Cow position:chr21:24611691-24611535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:303-460
               
               
               Cow position:chr21:28882263-28882419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:303-461
               
               
               Cow position:chr21:11006689-11006531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):59, 81

               
               
               Conread position:303-461
               
               
               Cow position:chr21:19220716-19220558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:303-461
               
               
               Cow position:chr21:27744107-27744266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):104, 89

               
               
               Conread position:303-461
               
               
               Cow position:chr21:36121309-36121466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:303-461
               
               
               Cow position:chr21:41737990-41738145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:304-457
               
               
               Cow position:chr21:1464426-1464579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 104

               
               
               Conread position:305-461
               
               
               Cow position:chr21:16790061-16790224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:306-460
               
               
               Cow position:chr21:24757026-24757173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:306-461
               
               
               Cow position:chr21:31278268-31278425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 64

               
               
               Conread position:306-461
               
               
               Cow position:chr21:41437693-41437849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:307-461
               
               
               Cow position:chr21:7424928-7424776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:308-455
               
               
               Cow position:chr21:13134688-13134833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:308-460
               
               
               Cow position:chr21:37495859-37495708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:308-461
               
               
               Cow position:chr21:3135782-3135631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:308-461
               
               
               Cow position:chr21:12473969-12473825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:308-461
               
               
               Cow position:chr21:27567981-27568131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:308-461
               
               
               Cow position:chr21:47860685-47860839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:311-450
               
               
               Cow position:chr21:3016097-3015959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 94

               
               
               Conread position:311-461
               
               
               Cow position:chr21:6391431-6391581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:311-461
               
               
               Cow position:chr21:7460697-7460842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:311-461
               
               
               Cow position:chr21:29011880-29011739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:311-461
               
               
               Cow position:chr21:32272010-32272167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 78

               
               
               Conread position:313-421
               
               
               Cow position:chr21:19665810-19665702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:315-461
               
               
               Cow position:chr21:34722903-34723048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):99, 36

               
               
               Conread position:315-461
               
               
               Cow position:chr21:45446629-45446775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 9

               
               
               Conread position:317-450
               
               
               Cow position:chr21:9590635-9590766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 51

               
               
               Conread position:317-461
               
               
               Cow position:chr21:10829774-10829630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 86

               
               
               Conread position:317-461
               
               
               Cow position:chr21:45537280-45537425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:318-460
               
               
               Cow position:chr21:6041881-6042025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:319-460
               
               
               Cow position:chr21:32536494-32536627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:320-450
               
               
               Cow position:chr21:15414095-15413967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:320-460
               
               
               Cow position:chr21:19176341-19176480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:321-450
               
               
               Cow position:chr21:4043630-4043757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:321-461
               
               
               Cow position:chr21:16120061-16119925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:321-461
               
               
               Cow position:chr21:41482875-41482736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:324-457
               
               
               Cow position:chr21:21772192-21772325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:324-461
               
               
               Cow position:chr21:43655805-43655939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:325-453
               
               
               Cow position:chr21:42047938-42047810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:325-457
               
               
               Cow position:chr21:48205117-48204985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:326-460
               
               
               Cow position:chr21:34727312-34727440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:326-461
               
               
               Cow position:chr21:5344983-5345118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:331-461
               
               
               Cow position:chr21:31258576-31258706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:331-461
               
               
               Cow position:chr21:33384392-33384262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:332-461
               
               
               Cow position:chr21:19236859-19236731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:333-461
               
               
               Cow position:chr21:41692162-41692290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:334-459
               
               
               Cow position:chr21:19340119-19339995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:342-461
               
               
               Cow position:chr21:16099444-16099323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:344-461
               
               
               Cow position:chr21:42227576-42227460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:347-453
               
               
               Cow position:chr21:7535420-7535315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:348-460
               
               
               Cow position:chr21:34209889-34209778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:348-461
               
               
               Cow position:chr21:47784719-47784832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:353-457
               
               
               Cow position:chr21:40821763-40821659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.
Conread position:	1-183
Cow position:	chr21:20588796-20588971 (view UCSC Genome Browser custom track)
Alignm length:	184
Alignm identity:	132
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	122, 31
Conread position:	1-218
Cow position:	chr21:8985314-8985524 (view UCSC Genome Browser custom track)
Alignm length:	219
Alignm identity:	169
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	116, 30
Conread position:	1-224
Cow position:	chr21:16909820-16910046 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	160
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	120, 30
Conread position:	1-228
Cow position:	chr21:42190402-42190188 (view UCSC Genome Browser custom track)
Alignm length:	229
Alignm identity:	170
Alignm E-value:	6e-31
Alignm gaps (pig, cow):	120, 30
Conread position:	1-231
Cow position:	chr21:5344426-5344647 (view UCSC Genome Browser custom track)
Alignm length:	237
Alignm identity:	178
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	119, 30
Conread position:	1-233
Cow position:	chr21:36163198-36162969 (view UCSC Genome Browser custom track)
Alignm length:	237
Alignm identity:	185
Alignm E-value:	0
Alignm gaps (pig, cow):	122, 40
Conread position:	1-244
Cow position:	chr21:33419950-33419720 (view UCSC Genome Browser custom track)
Alignm length:	246
Alignm identity:	190
Alignm E-value:	1.99965e-42
Alignm gaps (pig, cow):	172, 36
Conread position:	1-256
Cow position:	chr21:641349-641601 (view UCSC Genome Browser custom track)
Alignm length:	261
Alignm identity:	196
Alignm E-value:	7.00649e-43
Alignm gaps (pig, cow):	120, 34
Conread position:	1-310
Cow position:	chr21:363420-363722 (view UCSC Genome Browser custom track)
Alignm length:	317
Alignm identity:	235
Alignm E-value:	0
Alignm gaps (pig, cow):	157, 30
Conread position:	1-360
Cow position:	chr21:725125-724746 (view UCSC Genome Browser custom track)
Alignm length:	389
Alignm identity:	282
Alignm E-value:	0
Alignm gaps (pig, cow):	119, 30
Conread position:	1-371
Cow position:	chr21:16188031-16187657 (view UCSC Genome Browser custom track)
Alignm length:	393
Alignm identity:	267
Alignm E-value:	6e-31
Alignm gaps (pig, cow):	119, 29
Conread position:	1-372
Cow position:	chr21:33997460-33997076 (view UCSC Genome Browser custom track)
Alignm length:	393
Alignm identity:	283
Alignm E-value:	0
Alignm gaps (pig, cow):	120, 45
Conread position:	1-387
Cow position:	chr21:46973370-46972984 (view UCSC Genome Browser custom track)
Alignm length:	409
Alignm identity:	280
Alignm E-value:	6e-32
Alignm gaps (pig, cow):	26, 122
Conread position:	1-396
Cow position:	chr21:10514577-10514976 (view UCSC Genome Browser custom track)
Alignm length:	423
Alignm identity:	302
Alignm E-value:	1.99965e-42
Alignm gaps (pig, cow):	120, 28
Conread position:	1-397
Cow position:	chr21:21223049-21223457 (view UCSC Genome Browser custom track)
Alignm length:	413
Alignm identity:	283
Alignm E-value:	0
Alignm gaps (pig, cow):	118, 75
Conread position:	1-400
Cow position:	chr21:15976406-15976811 (view UCSC Genome Browser custom track)
Alignm length:	422
Alignm identity:	311
Alignm E-value:	0
Alignm gaps (pig, cow):	37, 17
Conread position:	1-415
Cow position:	chr21:4399565-4399997 (view UCSC Genome Browser custom track)
Alignm length:	442
Alignm identity:	311
Alignm E-value:	0
Alignm gaps (pig, cow):	119, 30
Conread position:	1-418
Cow position:	chr21:23322316-23321881 (view UCSC Genome Browser custom track)
Alignm length:	446
Alignm identity:	326
Alignm E-value:	0
Alignm gaps (pig, cow):	119, 38
Conread position:	1-421
Cow position:	chr21:26244692-26245114 (view UCSC Genome Browser custom track)
Alignm length:	432
Alignm identity:	300
Alignm E-value:	0
Alignm gaps (pig, cow):	26, 54
Conread position:	1-450
Cow position:	chr21:9416007-9416476 (view UCSC Genome Browser custom track)
Alignm length:	480
Alignm identity:	363
Alignm E-value:	0
Alignm gaps (pig, cow):	119, 30