Cow genome map
| Conread name: | ruio04_d15.y1 |
| Conread position: | 6-390 |
| Cow position: | chr11:68664394-68664001 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 10-386 |
| Cow position: | chr11:23883746-23883357 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 89, 381 |
| Conread position: | 15-319 |
| Cow position: | chr11:3280363-3280037 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 79, 220 |
| Conread position: | 15-408 |
| Cow position: | chr11:18436961-18437366 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 26 |
| Conread position: | 24-313 |
| Cow position: | chr11:82121836-82122124 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 88-386 |
| Cow position: | chr11:70030737-70030429 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 91-345 |
| Cow position: | chr11:13224530-13224270 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-352 |
| Cow position: | chr11:31802404-31802676 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-386 |
| Cow position: | chr11:44153768-44154073 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 297 |
| Conread position: | 91-386 |
| Cow position: | chr11:46142674-46142976 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 91-386 |
| Cow position: | chr11:54304218-54303913 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-386 |
| Cow position: | chr11:56463676-56463372 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 91-389 |
| Cow position: | chr11:2286028-2285719 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:4596882-4596573 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 67, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:4734598-4734289 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:10698431-10698740 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:10871510-10871819 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:15047772-15047465 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 96 |
| Conread position: | 91-389 |
| Cow position: | chr11:17854409-17854100 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 62, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:19060758-19061068 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 99 |
| Conread position: | 91-389 |
| Cow position: | chr11:22617631-22617940 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:24333678-24333987 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:24397083-24397392 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:28125828-28125521 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:30777278-30776969 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:30929697-30929388 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:33189886-33189577 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:47573221-47573530 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:52846790-52846481 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 91-389 |
| Cow position: | chr11:54302852-54302543 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:65760292-65760600 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 91-389 |
| Cow position: | chr11:72369366-72369060 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 70, 89 |
| Conread position: | 91-394 |
| Cow position: | chr11:15653794-15653485 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 91-396 |
| Cow position: | chr11:75710938-75711254 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-423 |
| Cow position: | chr11:49935433-49935773 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 188 |
| Conread position: | 110-329 |
| Cow position: | chr11:46032456-46032682 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 162 |
| Conread position: | 110-389 |
| Cow position: | chr11:43510679-43510969 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 112-386 |
| Cow position: | chr11:53855820-53855545 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 161 |
| Conread position: | 112-422 |
| Cow position: | chr11:79169078-79169390 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 112-428 |
| Cow position: | chr11:40350770-40351091 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 113-364 |
| Cow position: | chr11:71034198-71034456 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 113-386 |
| Cow position: | chr11:18756126-18755851 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 71 |
| Conread position: | 113-389 |
| Cow position: | chr11:8366853-8366566 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 76 |
| Conread position: | 113-491 |
| Cow position: | chr11:47086843-47087231 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 47, 80 |
| Conread position: | 115-358 |
| Cow position: | chr11:57595961-57595707 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 71 |
| Conread position: | 115-364 |
| Cow position: | chr11:64477887-64478141 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 115-371 |
| Cow position: | chr11:5260895-5261158 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 46, 71 |
| Conread position: | 115-373 |
| Cow position: | chr11:54299202-54298957 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 87, 70 |
| Conread position: | 115-387 |
| Cow position: | chr11:82419481-82419208 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 116-389 |
| Cow position: | chr11:2800970-2801253 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 116-389 |
| Cow position: | chr11:24045471-24045754 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 116-389 |
| Cow position: | chr11:30088166-30087882 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 117-379 |
| Cow position: | chr11:68130678-68130418 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 117-386 |
| Cow position: | chr11:33601350-33601630 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 118-394 |
| Cow position: | chr11:31836472-31836185 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 71 |
Show alignments to all cow chromosomes.