Cow genome map
| Conread name: | ruio04_d15.y1 |
| Conread position: | 7-338 |
| Cow position: | chr21:39921481-39921135 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 226 |
| Conread position: | 10-354 |
| Cow position: | chr21:208138-207786 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 20 |
| Conread position: | 15-364 |
| Cow position: | chr21:29908225-29908583 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 182 |
| Conread position: | 15-386 |
| Cow position: | chr21:20243750-20244127 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 43-399 |
| Cow position: | chr21:3955162-3955491 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 248, 9 |
| Conread position: | 91-307 |
| Cow position: | chr21:29015692-29015915 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 185 |
| Conread position: | 91-332 |
| Cow position: | chr21:30159291-30159536 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 69, 98 |
| Conread position: | 91-375 |
| Cow position: | chr21:149924-149630 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 91-375 |
| Cow position: | chr21:7597493-7597788 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-375 |
| Cow position: | chr21:41795947-41796242 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 91-379 |
| Cow position: | chr21:13090024-13090311 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 173, 74 |
| Conread position: | 91-386 |
| Cow position: | chr21:2293406-2293709 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 91-386 |
| Cow position: | chr21:2878064-2878367 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 295 |
| Conread position: | 91-386 |
| Cow position: | chr21:4035514-4035806 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 73, 98 |
| Conread position: | 91-386 |
| Cow position: | chr21:5009691-5009997 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 65, 90 |
| Conread position: | 91-386 |
| Cow position: | chr21:28028410-28028103 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-386 |
| Cow position: | chr21:33257334-33257029 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 70, 297 |
| Conread position: | 91-386 |
| Cow position: | chr21:37923954-37923649 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-386 |
| Cow position: | chr21:39469987-39470291 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 70, 39 |
| Conread position: | 91-386 |
| Cow position: | chr21:42558552-42558247 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 70, 297 |
| Conread position: | 91-389 |
| Cow position: | chr21:4719042-4719351 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr21:16575669-16575978 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr21:18574292-18573992 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 91-389 |
| Cow position: | chr21:23341429-23341120 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 91-389 |
| Cow position: | chr21:27147774-27148083 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr21:30298257-30297948 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr21:30850640-30850331 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr21:32773713-32773404 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr21:33709722-33710031 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 109-386 |
| Cow position: | chr21:33316606-33316893 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 52, 272 |
| Conread position: | 110-364 |
| Cow position: | chr21:22862147-22861878 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 75 |
| Conread position: | 112-288 |
| Cow position: | chr21:1060018-1059835 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 112-330 |
| Cow position: | chr21:12100426-12100209 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 48, 77 |
| Conread position: | 112-386 |
| Cow position: | chr21:32534569-32534294 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 113-356 |
| Cow position: | chr21:45457151-45456911 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 71 |
| Conread position: | 113-358 |
| Cow position: | chr21:4939922-4939669 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 76 |
| Conread position: | 113-386 |
| Cow position: | chr21:2289801-2289521 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 113-393 |
| Cow position: | chr21:31499755-31499470 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 87, 72 |
| Conread position: | 114-337 |
| Cow position: | chr21:42030883-42030658 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 71 |
| Conread position: | 115-355 |
| Cow position: | chr21:47971050-47971303 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 57 |
| Conread position: | 115-382 |
| Cow position: | chr21:44262935-44262668 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 74 |
| Conread position: | 116-358 |
| Cow position: | chr21:2514600-2514351 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 116-386 |
| Cow position: | chr21:8071343-8071626 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 269 |
| Conread position: | 116-389 |
| Cow position: | chr21:38865859-38866143 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 117-382 |
| Cow position: | chr21:13111375-13111646 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 161 |
| Conread position: | 117-386 |
| Cow position: | chr21:5020890-5020619 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 118-386 |
| Cow position: | chr21:1196288-1196011 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 269 |
| Conread position: | 118-389 |
| Cow position: | chr21:36163538-36163815 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 68 |
Show alignments to all cow chromosomes.